Gchil3810.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3810.t1
Unique NameGchil3810.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length115
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:518139..518574 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog35128.Thaps31446
PFAMsRibosomal_S21
Max annot lvl2836|Bacillariophyta
Evalue6.25e-12
EggNOG OGs2E8X3@1|root,2QZEU@2759|Eukaryota,2XHKA@2836|Bacillariophyta
DescriptionRibosomal protein S21
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3810Gchil3810Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 518139..518574 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3810.t1Gchil3810.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 518139..518574 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3810.t1.stop1Gchil3810.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 518139..518141 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3810.t1.CDS1Gchil3810.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 518139..518311 -
Gchil3810.t1.CDS2Gchil3810.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 518403..518574 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3810.t1.exon1Gchil3810.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 518139..518311 -
Gchil3810.t1.exon2Gchil3810.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 518403..518574 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3810.t1.intron1Gchil3810.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000010_pilon 518312..518402 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3810.t1.start1Gchil3810.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 518572..518574 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3810.t1 ID=Gchil3810.t1|Name=Gchil3810.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=115bp
MTPSPAATTLCPARPAPFFSSMAFGTPLPARIAPLPHFSNTRMEVTVVVG
DSEPIEGALRRFKKEVSKSGHLFELRRRRYFETNTEKRIRKAAAAKRKAR
LTRNSARQAQRMAF*
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spliced messenger RNA

>Gchil3810.t1 ID=Gchil3810.t1|Name=Gchil3810.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=345bp|location=Sequence derived from alignment at tig00000010_pilon:518139..518574- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCCCTCGCCGGCCGCCACAACCCTATGTCCCGCGCGTCCCGCCCC
GTTCTTCTCCAGCATGGCATTTGGCACCCCACTTCCGGCCAGAATCGCGC
CTCTGCCACACTTCTCAAACACCCGCATGGAGGTCACTGTTGTCGTTGGA
GACAGCGAACCGATCGAAGGAGCCTTGCGCCGATTTAAGAAGGAAGTTTC
GAAAAGTGGACATCTTTTCGAGCTAAGAAGAAGACGATATTTTGAAACCA
ATACCGAGAAGCGAATTCGCAAAGCTGCTGCTGCGAAGCGCAAAGCTAGA
CTCACCAGAAATTCAGCACGCCAAGCCCAGCGCATGGCCTTCTAG
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protein sequence of Gchil3810.t1

>Gchil3810.t1 ID=Gchil3810.t1|Name=Gchil3810.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=115bp
MTPSPAATTLCPARPAPFFSSMAFGTPLPARIAPLPHFSNTRMEVTVVVG
DSEPIEGALRRFKKEVSKSGHLFELRRRRYFETNTEKRIRKAAAAKRKAR
LTRNSARQAQRMAF*
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mRNA from alignment at tig00000010_pilon:518139..518574-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3810.t1 ID=Gchil3810.t1|Name=Gchil3810.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=436bp|location=Sequence derived from alignment at tig00000010_pilon:518139..518574- (Gracilaria chilensis NLEC103_M9 male)
ATGACTCCCTCGCCGGCCGCCACAACCCTATGTCCCGCGCGTCCCGCCCC
GTTCTTCTCCAGCATGGCATTTGGCACCCCACTTCCGGCCAGAATCGCGC
CTCTGCCACACTTCTCAAACACCCGCATGGAGGTCACTGTTGTCGTTGGA
GACAGCGAACCGATCGAAGGAGGTAAGAATTGGCATAGATCCGTCACCCT
GTGCGCAGTCATCTTTCCATTGCTCTAACACTTCTTCCCATGCGTTCGCG
TGTTTTGCGTTAGCCTTGCGCCGATTTAAGAAGGAAGTTTCGAAAAGTGG
ACATCTTTTCGAGCTAAGAAGAAGACGATATTTTGAAACCAATACCGAGA
AGCGAATTCGCAAAGCTGCTGCTGCGAAGCGCAAAGCTAGACTCACCAGA
AATTCAGCACGCCAAGCCCAGCGCATGGCCTTCTAG
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Coding sequence (CDS) from alignment at tig00000010_pilon:518139..518574-

>Gchil3810.t1 ID=Gchil3810.t1|Name=Gchil3810.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=345bp|location=Sequence derived from alignment at tig00000010_pilon:518139..518574- (Gracilaria chilensis NLEC103_M9 male)
ATGACTCCCTCGCCGGCCGCCACAACCCTATGTCCCGCGCGTCCCGCCCC
GTTCTTCTCCAGCATGGCATTTGGCACCCCACTTCCGGCCAGAATCGCGC
CTCTGCCACACTTCTCAAACACCCGCATGGAGGTCACTGTTGTCGTTGGA
GACAGCGAACCGATCGAAGGAGCCTTGCGCCGATTTAAGAAGGAAGTTTC
GAAAAGTGGACATCTTTTCGAGCTAAGAAGAAGACGATATTTTGAAACCA
ATACCGAGAAGCGAATTCGCAAAGCTGCTGCTGCGAAGCGCAAAGCTAGA
CTCACCAGAAATTCAGCACGCCAAGCCCAGCGCATGGCCTTCTAG
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