Gchil3802.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3802.t1
Unique Name	Gchil3802.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	570

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000010_pilon	contig	tig00000010_pilon:467746..469455 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705620.1
Preferred name	EGY1
PFAMs	Peptidase_M50
Max annot lvl	2759\|Eukaryota
GOs	GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006508,GO:0006807,GO:0006950,GO:0006970,GO:0006996,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009314,GO:0009416,GO:0009507,GO:0009536,GO:0009605,GO:0009606,GO:0009628,GO:0009629,GO:0009630,GO:0009651,GO:0009657,GO:0009658,GO:0009668,GO:0009719,GO:0009723,GO:0009725,GO:0009959,GO:0009987,GO:0010027,GO:0010033,GO:0010207,GO:0015979,GO:0016043,GO:0016787,GO:0019538,GO:0019684,GO:0022607,GO:0034622,GO:0042221,GO:0043157,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0048564,GO:0050896,GO:0060359,GO:0061024,GO:0065003,GO:0070011,GO:0071704,GO:0071840,GO:0140096,GO:1901564,GO:1901698
Evalue	5.96e-139
EggNOG OGs	COG0750@1\|root,2QUAP@2759\|Eukaryota
Description	response to cation stress
COG category	M

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3802	Gchil3802	Gracilaria chilensis NLEC103_M9 male	gene	tig00000010_pilon 467746..469455 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3802.t1.stop1	Gchil3802.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000010_pilon 467746..467748 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3802.t1.CDS1	Gchil3802.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000010_pilon 467746..469455 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3802.t1.exon1	Gchil3802.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000010_pilon 467746..469455 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3802.t1.start1	Gchil3802.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000010_pilon 469453..469455 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3802.t1	Gchil3802.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000010_pilon 467746..469455 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000010_pilon:467746..469455-
coding sequence from alignment at tig00000010_pilon:467746..469455-

mRNA sequence

>Gchil3802.t1 ID=Gchil3802.t1|Name=Gchil3802.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=570bp
MLNLPAFLSVSPFYRPPSRFRRSVCRPIRPRALNYALVCSAQGETTQSTP
SQIPPSQLPKESPEPAVTNSTLTPEERKEKARLARIEAERLELMAAKARL
EFERAELQADRKRLELDKMKTLKDAHDAGKAPPSAEKQNPYDEEKTEESV
EKKPASTTSPQLTAGSLSEILSAEFPRVSEKDIEIIKEKLCGMKTFFVTD
VDRSPFDERVVFRGNMRQSADKLLEDLEALAEKEGIAGRVRLFLLYDPKD
STDGDDKRPVLVALPSAAKPSRTNTFSAIFAAVLGAAACFTTFSYGIGIF
GLTPEVITQIAKGSLEDALLTLPISAGAIAISVFHEIGHRVAAAARGIKV
GLPLFIPSLQIGTYGTITPLESYPRLRKDMFDFSVAGPLAGTITSFVALV
AGLVITGSGQIADWFPQIPSSLFHASVLVGTVADAILPAGLREQATIAVH
PLAVIGYTGLLINALNLMPIGRLDGGRIVQSLYGRVVAGRATAFTLLLQG
ISSLVGNSPLLLFWGLVCVFFQRESDYPCQNEIIEPDGTRTAIGLAALFV
MLLILIPFPDQIGDILGQY*

spliced messenger RNA

>Gchil3802.t1 ID=Gchil3802.t1|Name=Gchil3802.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1710bp|location=Sequence derived from alignment at tig00000010_pilon:467746..469455- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGAACCTTCCGGCCTTTCTCAGCGTATCTCCGTTCTACCGTCCTCC
CTCTCGCTTTCGTCGCAGCGTATGCCGTCCTATTCGTCCGCGCGCCCTTA
ATTATGCTCTTGTATGCAGCGCACAGGGAGAGACTACGCAATCTACTCCC
TCGCAAATTCCACCCTCGCAACTTCCCAAGGAAAGTCCTGAGCCTGCTGT
TACAAACAGCACTCTAACGCCCGAAGAGCGGAAGGAAAAGGCACGCCTTG
CGCGTATAGAGGCCGAGCGATTAGAACTCATGGCTGCTAAGGCTCGTTTG
GAATTTGAGCGTGCCGAGTTGCAAGCAGATCGAAAGCGTTTAGAGTTGGA
TAAAATGAAAACCTTGAAGGATGCGCATGATGCGGGAAAGGCGCCCCCAT
CCGCTGAGAAGCAAAACCCTTACGACGAAGAGAAGACCGAAGAAAGTGTC
GAAAAGAAACCTGCCTCGACTACGTCGCCGCAACTAACGGCTGGCTCGCT
GTCTGAGATTCTTAGCGCCGAGTTTCCGCGCGTGTCTGAGAAGGACATAG
AAATTATCAAAGAGAAACTGTGCGGAATGAAGACTTTCTTTGTGACCGAC
GTTGACAGATCCCCTTTCGATGAGCGTGTCGTGTTTCGGGGAAACATGAG
ACAAAGTGCCGATAAATTGCTCGAAGATCTTGAAGCGCTGGCTGAGAAAG
AAGGGATAGCAGGGCGTGTACGCCTATTTCTGCTGTACGACCCAAAAGAT
TCTACAGATGGCGATGATAAGCGACCGGTTTTAGTTGCGCTACCATCTGC
GGCAAAACCGAGCCGGACAAACACATTTTCTGCTATATTTGCGGCAGTGC
TGGGGGCGGCCGCGTGCTTTACAACCTTTTCGTATGGTATTGGAATCTTC
GGTCTTACGCCGGAGGTTATCACTCAGATTGCAAAGGGGAGCCTAGAAGA
TGCGCTGCTTACCCTTCCCATTTCCGCTGGTGCGATAGCTATTTCTGTTT
TTCATGAGATAGGTCATCGAGTTGCAGCAGCCGCTCGTGGAATCAAGGTC
GGTCTTCCGTTATTCATTCCAAGCCTACAGATTGGCACATACGGTACTAT
TACTCCGCTTGAGAGTTACCCGCGATTGAGAAAAGATATGTTTGATTTCT
CCGTCGCGGGGCCGTTAGCCGGAACCATTACGAGTTTCGTGGCTTTGGTG
GCTGGCCTTGTGATCACCGGAAGCGGACAAATTGCGGACTGGTTCCCACA
AATCCCGTCTAGTTTGTTTCATGCATCGGTTCTTGTTGGAACAGTGGCTG
ATGCCATTCTACCGGCTGGATTAAGAGAACAAGCAACTATCGCCGTTCAC
CCCTTGGCTGTCATCGGGTACACCGGCTTGTTAATTAACGCTCTGAATCT
AATGCCTATCGGAAGACTAGACGGTGGACGGATTGTCCAATCCCTCTACG
GCCGGGTCGTGGCGGGCAGGGCAACAGCTTTCACATTGTTACTACAAGGA
ATCAGTTCTCTCGTTGGAAATTCTCCTCTTCTTTTGTTCTGGGGTCTTGT
GTGCGTGTTCTTTCAAAGAGAAAGTGACTATCCTTGCCAGAACGAAATTA
TTGAACCGGATGGCACACGCACCGCCATTGGACTAGCCGCACTTTTTGTC
ATGCTCCTTATTCTGATTCCGTTTCCAGATCAGATTGGTGATATCTTGGG
GCAATACTAG

protein sequence of Gchil3802.t1

>Gchil3802.t1 ID=Gchil3802.t1|Name=Gchil3802.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=570bp
MLNLPAFLSVSPFYRPPSRFRRSVCRPIRPRALNYALVCSAQGETTQSTP
SQIPPSQLPKESPEPAVTNSTLTPEERKEKARLARIEAERLELMAAKARL
EFERAELQADRKRLELDKMKTLKDAHDAGKAPPSAEKQNPYDEEKTEESV
EKKPASTTSPQLTAGSLSEILSAEFPRVSEKDIEIIKEKLCGMKTFFVTD
VDRSPFDERVVFRGNMRQSADKLLEDLEALAEKEGIAGRVRLFLLYDPKD
STDGDDKRPVLVALPSAAKPSRTNTFSAIFAAVLGAAACFTTFSYGIGIF
GLTPEVITQIAKGSLEDALLTLPISAGAIAISVFHEIGHRVAAAARGIKV
GLPLFIPSLQIGTYGTITPLESYPRLRKDMFDFSVAGPLAGTITSFVALV
AGLVITGSGQIADWFPQIPSSLFHASVLVGTVADAILPAGLREQATIAVH
PLAVIGYTGLLINALNLMPIGRLDGGRIVQSLYGRVVAGRATAFTLLLQG
ISSLVGNSPLLLFWGLVCVFFQRESDYPCQNEIIEPDGTRTAIGLAALFV
MLLILIPFPDQIGDILGQY*

mRNA from alignment at tig00000010_pilon:467746..469455-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3802.t1 ID=Gchil3802.t1|Name=Gchil3802.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1710bp|location=Sequence derived from alignment at tig00000010_pilon:467746..469455- (Gracilaria chilensis NLEC103_M9 male)
ATGCTGAACCTTCCGGCCTTTCTCAGCGTATCTCCGTTCTACCGTCCTCC
CTCTCGCTTTCGTCGCAGCGTATGCCGTCCTATTCGTCCGCGCGCCCTTA
ATTATGCTCTTGTATGCAGCGCACAGGGAGAGACTACGCAATCTACTCCC
TCGCAAATTCCACCCTCGCAACTTCCCAAGGAAAGTCCTGAGCCTGCTGT
TACAAACAGCACTCTAACGCCCGAAGAGCGGAAGGAAAAGGCACGCCTTG
CGCGTATAGAGGCCGAGCGATTAGAACTCATGGCTGCTAAGGCTCGTTTG
GAATTTGAGCGTGCCGAGTTGCAAGCAGATCGAAAGCGTTTAGAGTTGGA
TAAAATGAAAACCTTGAAGGATGCGCATGATGCGGGAAAGGCGCCCCCAT
CCGCTGAGAAGCAAAACCCTTACGACGAAGAGAAGACCGAAGAAAGTGTC
GAAAAGAAACCTGCCTCGACTACGTCGCCGCAACTAACGGCTGGCTCGCT
GTCTGAGATTCTTAGCGCCGAGTTTCCGCGCGTGTCTGAGAAGGACATAG
AAATTATCAAAGAGAAACTGTGCGGAATGAAGACTTTCTTTGTGACCGAC
GTTGACAGATCCCCTTTCGATGAGCGTGTCGTGTTTCGGGGAAACATGAG
ACAAAGTGCCGATAAATTGCTCGAAGATCTTGAAGCGCTGGCTGAGAAAG
AAGGGATAGCAGGGCGTGTACGCCTATTTCTGCTGTACGACCCAAAAGAT
TCTACAGATGGCGATGATAAGCGACCGGTTTTAGTTGCGCTACCATCTGC
GGCAAAACCGAGCCGGACAAACACATTTTCTGCTATATTTGCGGCAGTGC
TGGGGGCGGCCGCGTGCTTTACAACCTTTTCGTATGGTATTGGAATCTTC
GGTCTTACGCCGGAGGTTATCACTCAGATTGCAAAGGGGAGCCTAGAAGA
TGCGCTGCTTACCCTTCCCATTTCCGCTGGTGCGATAGCTATTTCTGTTT
TTCATGAGATAGGTCATCGAGTTGCAGCAGCCGCTCGTGGAATCAAGGTC
GGTCTTCCGTTATTCATTCCAAGCCTACAGATTGGCACATACGGTACTAT
TACTCCGCTTGAGAGTTACCCGCGATTGAGAAAAGATATGTTTGATTTCT
CCGTCGCGGGGCCGTTAGCCGGAACCATTACGAGTTTCGTGGCTTTGGTG
GCTGGCCTTGTGATCACCGGAAGCGGACAAATTGCGGACTGGTTCCCACA
AATCCCGTCTAGTTTGTTTCATGCATCGGTTCTTGTTGGAACAGTGGCTG
ATGCCATTCTACCGGCTGGATTAAGAGAACAAGCAACTATCGCCGTTCAC
CCCTTGGCTGTCATCGGGTACACCGGCTTGTTAATTAACGCTCTGAATCT
AATGCCTATCGGAAGACTAGACGGTGGACGGATTGTCCAATCCCTCTACG
GCCGGGTCGTGGCGGGCAGGGCAACAGCTTTCACATTGTTACTACAAGGA
ATCAGTTCTCTCGTTGGAAATTCTCCTCTTCTTTTGTTCTGGGGTCTTGT
GTGCGTGTTCTTTCAAAGAGAAAGTGACTATCCTTGCCAGAACGAAATTA
TTGAACCGGATGGCACACGCACCGCCATTGGACTAGCCGCACTTTTTGTC
ATGCTCCTTATTCTGATTCCGTTTCCAGATCAGATTGGTGATATCTTGGG
GCAATACTAG

Coding sequence (CDS) from alignment at tig00000010_pilon:467746..469455-

>Gchil3802.t1 ID=Gchil3802.t1|Name=Gchil3802.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1710bp|location=Sequence derived from alignment at tig00000010_pilon:467746..469455- (Gracilaria chilensis NLEC103_M9 male)
ATGCTGAACCTTCCGGCCTTTCTCAGCGTATCTCCGTTCTACCGTCCTCC
CTCTCGCTTTCGTCGCAGCGTATGCCGTCCTATTCGTCCGCGCGCCCTTA
ATTATGCTCTTGTATGCAGCGCACAGGGAGAGACTACGCAATCTACTCCC
TCGCAAATTCCACCCTCGCAACTTCCCAAGGAAAGTCCTGAGCCTGCTGT
TACAAACAGCACTCTAACGCCCGAAGAGCGGAAGGAAAAGGCACGCCTTG
CGCGTATAGAGGCCGAGCGATTAGAACTCATGGCTGCTAAGGCTCGTTTG
GAATTTGAGCGTGCCGAGTTGCAAGCAGATCGAAAGCGTTTAGAGTTGGA
TAAAATGAAAACCTTGAAGGATGCGCATGATGCGGGAAAGGCGCCCCCAT
CCGCTGAGAAGCAAAACCCTTACGACGAAGAGAAGACCGAAGAAAGTGTC
GAAAAGAAACCTGCCTCGACTACGTCGCCGCAACTAACGGCTGGCTCGCT
GTCTGAGATTCTTAGCGCCGAGTTTCCGCGCGTGTCTGAGAAGGACATAG
AAATTATCAAAGAGAAACTGTGCGGAATGAAGACTTTCTTTGTGACCGAC
GTTGACAGATCCCCTTTCGATGAGCGTGTCGTGTTTCGGGGAAACATGAG
ACAAAGTGCCGATAAATTGCTCGAAGATCTTGAAGCGCTGGCTGAGAAAG
AAGGGATAGCAGGGCGTGTACGCCTATTTCTGCTGTACGACCCAAAAGAT
TCTACAGATGGCGATGATAAGCGACCGGTTTTAGTTGCGCTACCATCTGC
GGCAAAACCGAGCCGGACAAACACATTTTCTGCTATATTTGCGGCAGTGC
TGGGGGCGGCCGCGTGCTTTACAACCTTTTCGTATGGTATTGGAATCTTC
GGTCTTACGCCGGAGGTTATCACTCAGATTGCAAAGGGGAGCCTAGAAGA
TGCGCTGCTTACCCTTCCCATTTCCGCTGGTGCGATAGCTATTTCTGTTT
TTCATGAGATAGGTCATCGAGTTGCAGCAGCCGCTCGTGGAATCAAGGTC
GGTCTTCCGTTATTCATTCCAAGCCTACAGATTGGCACATACGGTACTAT
TACTCCGCTTGAGAGTTACCCGCGATTGAGAAAAGATATGTTTGATTTCT
CCGTCGCGGGGCCGTTAGCCGGAACCATTACGAGTTTCGTGGCTTTGGTG
GCTGGCCTTGTGATCACCGGAAGCGGACAAATTGCGGACTGGTTCCCACA
AATCCCGTCTAGTTTGTTTCATGCATCGGTTCTTGTTGGAACAGTGGCTG
ATGCCATTCTACCGGCTGGATTAAGAGAACAAGCAACTATCGCCGTTCAC
CCCTTGGCTGTCATCGGGTACACCGGCTTGTTAATTAACGCTCTGAATCT
AATGCCTATCGGAAGACTAGACGGTGGACGGATTGTCCAATCCCTCTACG
GCCGGGTCGTGGCGGGCAGGGCAACAGCTTTCACATTGTTACTACAAGGA
ATCAGTTCTCTCGTTGGAAATTCTCCTCTTCTTTTGTTCTGGGGTCTTGT
GTGCGTGTTCTTTCAAAGAGAAAGTGACTATCCTTGCCAGAACGAAATTA
TTGAACCGGATGGCACACGCACCGCCATTGGACTAGCCGCACTTTTTGTC
ATGCTCCTTATTCTGATTCCGTTTCCAGATCAGATTGGTGATATCTTGGG
GCAATACTAG