Gchil3798.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3798.t1
Unique NameGchil3798.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length842
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:461260..463785 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3798Gchil3798Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 461260..463785 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3798.t1.stop1Gchil3798.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 461260..461262 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3798.t1.CDS1Gchil3798.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 461260..463785 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3798.t1.exon1Gchil3798.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 461260..463785 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3798.t1.start1Gchil3798.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 463783..463785 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3798.t1Gchil3798.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 461260..463785 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3798.t1 ID=Gchil3798.t1|Name=Gchil3798.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=842bp
MALLQRPIAMPFLQGSAPWLKDYVIGALSESPKIPSLNASYLLATSPVSH
RRSVSCFDGAHSVRVVLSQSVASALDADEEGTGVTTRNLLGYVLAPVQAI
VLTDMTTSPPSATLLLKDVRVFCDRRHQRPPGIALQVDKDPEVVTALRAN
IGRQLAAFNDLPDRGDQHQNDAEFVQVLKSLEKECPPLPPQTLINERNVF
GLSSADDPVLENGIANGSPVLRDDENVELAIDPKDLELLEPDPLPILGTD
TTGSGTPQITAKSGVAQTPGADNEAQDVARNEAVSEERIAQEQENLHGLQ
SGLLEQSKKTVAHEAEEHHAPFTEEDRPLTQHFAFEDYIQLDEDISVKGT
SDSSEAPSIEELQLGTVFDVPDDDGEKRDVPCDTRGEDDRGSKRAGNGTG
ELQLAPKHANNPKKSTLAKLGTFGAQRDKGADSSRITLPASGDGQATANI
MAITRATRSTAKKVSPDVRQPGEDPENLPEKDENDPAVDRDATENVDNLN
EGVLDLDKEPNASRAEKEDVDEPASEIAAKESKSGDAEGEELPQPSSPRV
KTQRAAGPVMQTEGERDGNDGNVELSETGNERGKPPENDVVNEPEKETEA
AEKAMLANPFPVEAVDEGEKQHVHEEQKGERLDTDMVQTVPDKVSEKVSE
KAPEKAPEKAPEKAPEKAPEEAPEEAPEEAPENVHEEQEVWVVEQETQMS
VQVNVSNKTGEKATRSKKRPSPVAPAAVIADEIEPVDLKKGSAREGERAA
KQEQADFGRKSKRRRNNEDYHVIKAKAELQYLRDFRRKVDGDTEMFILNP
EHFLPRKTRRSVDRGSGESYPPPRMGDSVEVGNGKNDSATR*
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spliced messenger RNA

>Gchil3798.t1 ID=Gchil3798.t1|Name=Gchil3798.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2526bp|location=Sequence derived from alignment at tig00000010_pilon:461260..463785- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCTTCTGCAGCGTCCCATAGCTATGCCCTTCCTGCAGGGTAGCGC
TCCGTGGCTAAAGGACTACGTAATTGGCGCTTTATCCGAGTCTCCAAAAA
TCCCCTCGCTCAACGCCTCCTACCTGCTGGCAACTTCGCCCGTTTCTCAT
CGTCGAAGTGTCTCCTGCTTTGACGGTGCCCACAGCGTCCGCGTCGTGCT
CTCACAGTCCGTAGCATCCGCACTAGACGCCGATGAGGAGGGAACAGGCG
TAACCACTCGAAATCTTCTAGGCTACGTTTTGGCTCCAGTGCAAGCCATA
GTTCTCACTGATATGACTACTTCGCCGCCATCCGCGACGCTGCTTCTCAA
AGATGTACGCGTCTTTTGTGATAGAAGACATCAAAGACCTCCTGGCATTG
CACTCCAAGTGGATAAGGACCCGGAAGTAGTGACGGCGCTTCGTGCGAAC
ATTGGCCGTCAGCTTGCAGCGTTCAACGACCTGCCTGACAGGGGGGACCA
GCATCAGAACGATGCAGAGTTTGTCCAAGTTCTCAAAAGCTTGGAAAAGG
AATGTCCTCCGCTTCCCCCCCAAACACTTATAAACGAAAGAAACGTGTTT
GGTCTCAGCTCCGCAGATGACCCGGTGCTTGAAAATGGAATAGCGAACGG
ATCGCCGGTCCTGCGTGATGATGAGAATGTTGAACTGGCTATTGATCCGA
AAGACCTTGAACTGCTCGAACCAGACCCGTTGCCCATTCTCGGCACCGAT
ACAACCGGCTCGGGAACACCGCAAATCACAGCCAAATCAGGTGTCGCCCA
AACACCCGGAGCGGACAACGAAGCTCAAGATGTGGCGCGGAACGAAGCTG
TTTCTGAGGAGAGGATAGCGCAGGAACAGGAAAACTTGCATGGATTACAG
AGTGGTCTGCTAGAACAAAGTAAGAAGACTGTTGCACATGAAGCTGAGGA
ACATCATGCGCCGTTTACTGAGGAAGACCGCCCGCTTACGCAACACTTTG
CGTTTGAAGACTATATTCAACTTGATGAAGACATCAGCGTGAAGGGCACA
TCTGACTCGTCTGAGGCGCCAAGCATTGAAGAGCTGCAACTCGGTACGGT
ATTTGATGTTCCTGATGACGACGGCGAGAAACGGGACGTGCCGTGCGACA
CTCGTGGGGAAGATGATCGCGGAAGCAAAAGGGCGGGAAATGGGACAGGA
GAATTACAGTTGGCGCCGAAACATGCGAATAATCCAAAAAAATCGACTCT
CGCCAAATTGGGCACCTTTGGCGCCCAGCGCGATAAGGGGGCAGATTCTT
CAAGGATCACATTGCCTGCAAGTGGTGACGGTCAAGCTACCGCGAACATA
ATGGCAATTACAAGAGCGACTCGCTCGACGGCGAAAAAGGTGAGTCCTGA
TGTGAGGCAGCCTGGGGAGGACCCTGAAAACCTTCCTGAGAAAGACGAGA
ATGATCCTGCAGTCGACAGGGATGCGACTGAGAATGTGGACAACCTGAAC
GAAGGAGTGTTAGACCTTGACAAGGAGCCTAATGCAAGCAGAGCTGAGAA
AGAAGACGTGGATGAACCCGCATCCGAAATTGCAGCAAAGGAATCCAAAT
CAGGTGATGCGGAAGGCGAGGAACTACCGCAGCCCTCGTCCCCGAGAGTG
AAAACTCAGCGTGCTGCTGGGCCCGTCATGCAGACGGAGGGAGAACGTGA
CGGGAATGACGGAAACGTTGAGCTTTCGGAGACTGGGAACGAGCGTGGGA
AGCCACCTGAGAACGATGTAGTGAACGAACCCGAAAAAGAAACTGAGGCT
GCTGAAAAAGCGATGCTCGCGAACCCCTTTCCTGTGGAGGCTGTCGATGA
AGGAGAAAAGCAGCATGTCCACGAAGAACAGAAGGGCGAGAGATTAGATA
CCGATATGGTCCAAACGGTGCCGGACAAGGTGTCGGAAAAGGTGTCGGAA
AAGGCGCCCGAAAAGGCGCCCGAAAAGGCGCCCGAAAAGGCGCCCGAAAA
GGCGCCCGAAGAGGCGCCCGAAGAGGCGCCCGAAGAGGCGCCTGAAAACG
TACACGAAGAGCAGGAAGTATGGGTGGTCGAGCAAGAAACGCAAATGAGC
GTGCAAGTGAACGTCTCAAACAAGACAGGAGAGAAAGCAACACGCTCAAA
GAAACGACCTTCACCGGTAGCGCCCGCAGCGGTGATCGCGGACGAAATCG
AGCCGGTGGATTTGAAAAAAGGCTCGGCAAGGGAGGGGGAGCGCGCCGCG
AAGCAAGAGCAGGCGGACTTTGGAAGAAAAAGCAAGCGACGACGGAACAA
TGAGGATTATCATGTAATAAAGGCTAAGGCGGAACTGCAGTACTTGAGAG
ACTTTAGGCGAAAGGTGGATGGCGACACAGAAATGTTCATTCTGAACCCC
GAGCACTTTTTGCCGCGCAAGACAAGGAGGAGCGTGGATCGTGGCAGTGG
GGAATCGTACCCCCCTCCGCGAATGGGTGATAGTGTTGAGGTGGGTAATG
GCAAAAACGACAGCGCTACGCGGTGA
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protein sequence of Gchil3798.t1

>Gchil3798.t1 ID=Gchil3798.t1|Name=Gchil3798.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=842bp
MALLQRPIAMPFLQGSAPWLKDYVIGALSESPKIPSLNASYLLATSPVSH
RRSVSCFDGAHSVRVVLSQSVASALDADEEGTGVTTRNLLGYVLAPVQAI
VLTDMTTSPPSATLLLKDVRVFCDRRHQRPPGIALQVDKDPEVVTALRAN
IGRQLAAFNDLPDRGDQHQNDAEFVQVLKSLEKECPPLPPQTLINERNVF
GLSSADDPVLENGIANGSPVLRDDENVELAIDPKDLELLEPDPLPILGTD
TTGSGTPQITAKSGVAQTPGADNEAQDVARNEAVSEERIAQEQENLHGLQ
SGLLEQSKKTVAHEAEEHHAPFTEEDRPLTQHFAFEDYIQLDEDISVKGT
SDSSEAPSIEELQLGTVFDVPDDDGEKRDVPCDTRGEDDRGSKRAGNGTG
ELQLAPKHANNPKKSTLAKLGTFGAQRDKGADSSRITLPASGDGQATANI
MAITRATRSTAKKVSPDVRQPGEDPENLPEKDENDPAVDRDATENVDNLN
EGVLDLDKEPNASRAEKEDVDEPASEIAAKESKSGDAEGEELPQPSSPRV
KTQRAAGPVMQTEGERDGNDGNVELSETGNERGKPPENDVVNEPEKETEA
AEKAMLANPFPVEAVDEGEKQHVHEEQKGERLDTDMVQTVPDKVSEKVSE
KAPEKAPEKAPEKAPEKAPEEAPEEAPEEAPENVHEEQEVWVVEQETQMS
VQVNVSNKTGEKATRSKKRPSPVAPAAVIADEIEPVDLKKGSAREGERAA
KQEQADFGRKSKRRRNNEDYHVIKAKAELQYLRDFRRKVDGDTEMFILNP
EHFLPRKTRRSVDRGSGESYPPPRMGDSVEVGNGKNDSATR*
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mRNA from alignment at tig00000010_pilon:461260..463785-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3798.t1 ID=Gchil3798.t1|Name=Gchil3798.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2526bp|location=Sequence derived from alignment at tig00000010_pilon:461260..463785- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCTTCTGCAGCGTCCCATAGCTATGCCCTTCCTGCAGGGTAGCGC TCCGTGGCTAAAGGACTACGTAATTGGCGCTTTATCCGAGTCTCCAAAAA TCCCCTCGCTCAACGCCTCCTACCTGCTGGCAACTTCGCCCGTTTCTCAT CGTCGAAGTGTCTCCTGCTTTGACGGTGCCCACAGCGTCCGCGTCGTGCT CTCACAGTCCGTAGCATCCGCACTAGACGCCGATGAGGAGGGAACAGGCG TAACCACTCGAAATCTTCTAGGCTACGTTTTGGCTCCAGTGCAAGCCATA GTTCTCACTGATATGACTACTTCGCCGCCATCCGCGACGCTGCTTCTCAA AGATGTACGCGTCTTTTGTGATAGAAGACATCAAAGACCTCCTGGCATTG CACTCCAAGTGGATAAGGACCCGGAAGTAGTGACGGCGCTTCGTGCGAAC ATTGGCCGTCAGCTTGCAGCGTTCAACGACCTGCCTGACAGGGGGGACCA GCATCAGAACGATGCAGAGTTTGTCCAAGTTCTCAAAAGCTTGGAAAAGG AATGTCCTCCGCTTCCCCCCCAAACACTTATAAACGAAAGAAACGTGTTT GGTCTCAGCTCCGCAGATGACCCGGTGCTTGAAAATGGAATAGCGAACGG ATCGCCGGTCCTGCGTGATGATGAGAATGTTGAACTGGCTATTGATCCGA AAGACCTTGAACTGCTCGAACCAGACCCGTTGCCCATTCTCGGCACCGAT ACAACCGGCTCGGGAACACCGCAAATCACAGCCAAATCAGGTGTCGCCCA AACACCCGGAGCGGACAACGAAGCTCAAGATGTGGCGCGGAACGAAGCTG TTTCTGAGGAGAGGATAGCGCAGGAACAGGAAAACTTGCATGGATTACAG AGTGGTCTGCTAGAACAAAGTAAGAAGACTGTTGCACATGAAGCTGAGGA ACATCATGCGCCGTTTACTGAGGAAGACCGCCCGCTTACGCAACACTTTG CGTTTGAAGACTATATTCAACTTGATGAAGACATCAGCGTGAAGGGCACA TCTGACTCGTCTGAGGCGCCAAGCATTGAAGAGCTGCAACTCGGTACGGT ATTTGATGTTCCTGATGACGACGGCGAGAAACGGGACGTGCCGTGCGACA CTCGTGGGGAAGATGATCGCGGAAGCAAAAGGGCGGGAAATGGGACAGGA GAATTACAGTTGGCGCCGAAACATGCGAATAATCCAAAAAAATCGACTCT CGCCAAATTGGGCACCTTTGGCGCCCAGCGCGATAAGGGGGCAGATTCTT CAAGGATCACATTGCCTGCAAGTGGTGACGGTCAAGCTACCGCGAACATA ATGGCAATTACAAGAGCGACTCGCTCGACGGCGAAAAAGGTGAGTCCTGA TGTGAGGCAGCCTGGGGAGGACCCTGAAAACCTTCCTGAGAAAGACGAGA ATGATCCTGCAGTCGACAGGGATGCGACTGAGAATGTGGACAACCTGAAC GAAGGAGTGTTAGACCTTGACAAGGAGCCTAATGCAAGCAGAGCTGAGAA AGAAGACGTGGATGAACCCGCATCCGAAATTGCAGCAAAGGAATCCAAAT CAGGTGATGCGGAAGGCGAGGAACTACCGCAGCCCTCGTCCCCGAGAGTG AAAACTCAGCGTGCTGCTGGGCCCGTCATGCAGACGGAGGGAGAACGTGA CGGGAATGACGGAAACGTTGAGCTTTCGGAGACTGGGAACGAGCGTGGGA AGCCACCTGAGAACGATGTAGTGAACGAACCCGAAAAAGAAACTGAGGCT GCTGAAAAAGCGATGCTCGCGAACCCCTTTCCTGTGGAGGCTGTCGATGA AGGAGAAAAGCAGCATGTCCACGAAGAACAGAAGGGCGAGAGATTAGATA CCGATATGGTCCAAACGGTGCCGGACAAGGTGTCGGAAAAGGTGTCGGAA AAGGCGCCCGAAAAGGCGCCCGAAAAGGCGCCCGAAAAGGCGCCCGAAAA GGCGCCCGAAGAGGCGCCCGAAGAGGCGCCCGAAGAGGCGCCTGAAAACG TACACGAAGAGCAGGAAGTATGGGTGGTCGAGCAAGAAACGCAAATGAGC GTGCAAGTGAACGTCTCAAACAAGACAGGAGAGAAAGCAACACGCTCAAA GAAACGACCTTCACCGGTAGCGCCCGCAGCGGTGATCGCGGACGAAATCG AGCCGGTGGATTTGAAAAAAGGCTCGGCAAGGGAGGGGGAGCGCGCCGCG AAGCAAGAGCAGGCGGACTTTGGAAGAAAAAGCAAGCGACGACGGAACAA TGAGGATTATCATGTAATAAAGGCTAAGGCGGAACTGCAGTACTTGAGAG ACTTTAGGCGAAAGGTGGATGGCGACACAGAAATGTTCATTCTGAACCCC GAGCACTTTTTGCCGCGCAAGACAAGGAGGAGCGTGGATCGTGGCAGTGG GGAATCGTACCCCCCTCCGCGAATGGGTGATAGTGTTGAGGTGGGTAATG GCAAAAACGACAGCGCTACGCGGTGA
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Coding sequence (CDS) from alignment at tig00000010_pilon:461260..463785-

>Gchil3798.t1 ID=Gchil3798.t1|Name=Gchil3798.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2526bp|location=Sequence derived from alignment at tig00000010_pilon:461260..463785- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCTTCTGCAGCGTCCCATAGCTATGCCCTTCCTGCAGGGTAGCGC
TCCGTGGCTAAAGGACTACGTAATTGGCGCTTTATCCGAGTCTCCAAAAA
TCCCCTCGCTCAACGCCTCCTACCTGCTGGCAACTTCGCCCGTTTCTCAT
CGTCGAAGTGTCTCCTGCTTTGACGGTGCCCACAGCGTCCGCGTCGTGCT
CTCACAGTCCGTAGCATCCGCACTAGACGCCGATGAGGAGGGAACAGGCG
TAACCACTCGAAATCTTCTAGGCTACGTTTTGGCTCCAGTGCAAGCCATA
GTTCTCACTGATATGACTACTTCGCCGCCATCCGCGACGCTGCTTCTCAA
AGATGTACGCGTCTTTTGTGATAGAAGACATCAAAGACCTCCTGGCATTG
CACTCCAAGTGGATAAGGACCCGGAAGTAGTGACGGCGCTTCGTGCGAAC
ATTGGCCGTCAGCTTGCAGCGTTCAACGACCTGCCTGACAGGGGGGACCA
GCATCAGAACGATGCAGAGTTTGTCCAAGTTCTCAAAAGCTTGGAAAAGG
AATGTCCTCCGCTTCCCCCCCAAACACTTATAAACGAAAGAAACGTGTTT
GGTCTCAGCTCCGCAGATGACCCGGTGCTTGAAAATGGAATAGCGAACGG
ATCGCCGGTCCTGCGTGATGATGAGAATGTTGAACTGGCTATTGATCCGA
AAGACCTTGAACTGCTCGAACCAGACCCGTTGCCCATTCTCGGCACCGAT
ACAACCGGCTCGGGAACACCGCAAATCACAGCCAAATCAGGTGTCGCCCA
AACACCCGGAGCGGACAACGAAGCTCAAGATGTGGCGCGGAACGAAGCTG
TTTCTGAGGAGAGGATAGCGCAGGAACAGGAAAACTTGCATGGATTACAG
AGTGGTCTGCTAGAACAAAGTAAGAAGACTGTTGCACATGAAGCTGAGGA
ACATCATGCGCCGTTTACTGAGGAAGACCGCCCGCTTACGCAACACTTTG
CGTTTGAAGACTATATTCAACTTGATGAAGACATCAGCGTGAAGGGCACA
TCTGACTCGTCTGAGGCGCCAAGCATTGAAGAGCTGCAACTCGGTACGGT
ATTTGATGTTCCTGATGACGACGGCGAGAAACGGGACGTGCCGTGCGACA
CTCGTGGGGAAGATGATCGCGGAAGCAAAAGGGCGGGAAATGGGACAGGA
GAATTACAGTTGGCGCCGAAACATGCGAATAATCCAAAAAAATCGACTCT
CGCCAAATTGGGCACCTTTGGCGCCCAGCGCGATAAGGGGGCAGATTCTT
CAAGGATCACATTGCCTGCAAGTGGTGACGGTCAAGCTACCGCGAACATA
ATGGCAATTACAAGAGCGACTCGCTCGACGGCGAAAAAGGTGAGTCCTGA
TGTGAGGCAGCCTGGGGAGGACCCTGAAAACCTTCCTGAGAAAGACGAGA
ATGATCCTGCAGTCGACAGGGATGCGACTGAGAATGTGGACAACCTGAAC
GAAGGAGTGTTAGACCTTGACAAGGAGCCTAATGCAAGCAGAGCTGAGAA
AGAAGACGTGGATGAACCCGCATCCGAAATTGCAGCAAAGGAATCCAAAT
CAGGTGATGCGGAAGGCGAGGAACTACCGCAGCCCTCGTCCCCGAGAGTG
AAAACTCAGCGTGCTGCTGGGCCCGTCATGCAGACGGAGGGAGAACGTGA
CGGGAATGACGGAAACGTTGAGCTTTCGGAGACTGGGAACGAGCGTGGGA
AGCCACCTGAGAACGATGTAGTGAACGAACCCGAAAAAGAAACTGAGGCT
GCTGAAAAAGCGATGCTCGCGAACCCCTTTCCTGTGGAGGCTGTCGATGA
AGGAGAAAAGCAGCATGTCCACGAAGAACAGAAGGGCGAGAGATTAGATA
CCGATATGGTCCAAACGGTGCCGGACAAGGTGTCGGAAAAGGTGTCGGAA
AAGGCGCCCGAAAAGGCGCCCGAAAAGGCGCCCGAAAAGGCGCCCGAAAA
GGCGCCCGAAGAGGCGCCCGAAGAGGCGCCCGAAGAGGCGCCTGAAAACG
TACACGAAGAGCAGGAAGTATGGGTGGTCGAGCAAGAAACGCAAATGAGC
GTGCAAGTGAACGTCTCAAACAAGACAGGAGAGAAAGCAACACGCTCAAA
GAAACGACCTTCACCGGTAGCGCCCGCAGCGGTGATCGCGGACGAAATCG
AGCCGGTGGATTTGAAAAAAGGCTCGGCAAGGGAGGGGGAGCGCGCCGCG
AAGCAAGAGCAGGCGGACTTTGGAAGAAAAAGCAAGCGACGACGGAACAA
TGAGGATTATCATGTAATAAAGGCTAAGGCGGAACTGCAGTACTTGAGAG
ACTTTAGGCGAAAGGTGGATGGCGACACAGAAATGTTCATTCTGAACCCC
GAGCACTTTTTGCCGCGCAAGACAAGGAGGAGCGTGGATCGTGGCAGTGG
GGAATCGTACCCCCCTCCGCGAATGGGTGATAGTGTTGAGGTGGGTAATG
GCAAAAACGACAGCGCTACGCGGTGA
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