Gchil3794.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3794.t1
Unique NameGchil3794.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length286
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:422638..423495 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3794Gchil3794Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 422638..423495 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3794.t1.stop1Gchil3794.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 422638..422640 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3794.t1.CDS1Gchil3794.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 422638..423495 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3794.t1.exon1Gchil3794.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 422638..423495 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3794.t1.start1Gchil3794.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 423493..423495 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3794.t1Gchil3794.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 422638..423495 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3794.t1 ID=Gchil3794.t1|Name=Gchil3794.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=286bp
MKMARLARQNMEAGQPIQMPPGMRPVIELAVGNKSTIVTITADQTIKLAS
KSVTDISNIDATIVSALSASQTQYQCELRRRAALRAAREREHSAVAPAAA
AAAAAVTHDHHHHHDALLLKRSSACSSEGTHSADDARHGAPRPTATTTSC
DPYLDYIGTATDAKDDDDMHMPMPMHMHMTMEHPFAAELSSTLGDSKDAV
AVDGHFVVSERGSSDERASPTAAAAAAAAAAAAAAVAVAVATGGSSSCRS
DGDGRSCGADEHELEDLRRLDDGDMALASFSDMDD*
back to top

spliced messenger RNA

>Gchil3794.t1 ID=Gchil3794.t1|Name=Gchil3794.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=858bp|location=Sequence derived from alignment at tig00000010_pilon:422638..423495- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGATGGCTCGTCTCGCGCGCCAGAACATGGAGGCCGGACAGCCCAT
TCAGATGCCGCCCGGCATGCGCCCCGTCATCGAGCTCGCCGTGGGAAACA
AGTCCACCATCGTCACCATTACTGCCGACCAGACCATCAAGCTCGCCAGC
AAGTCTGTCACCGACATATCCAACATCGATGCCACCATTGTGAGCGCCCT
CTCAGCCTCGCAGACGCAGTATCAGTGTGAGCTGCGCCGCCGCGCCGCTC
TACGCGCCGCGCGCGAGCGCGAGCACTCTGCTGTCGCCCCGGCCGCCGCC
GCCGCCGCCGCCGCCGTCACACACGACCACCACCACCATCACGACGCTCT
GCTGCTCAAGCGCTCCAGCGCGTGTAGCTCGGAGGGCACGCACTCTGCAG
ACGACGCGCGCCATGGGGCGCCGCGACCCACCGCCACTACTACTAGTTGC
GATCCCTATCTGGACTACATTGGCACGGCCACTGATGCAAAGGACGACGA
CGATATGCACATGCCCATGCCCATGCACATGCACATGACCATGGAACACC
CGTTTGCGGCTGAGCTAAGTAGCACGCTGGGCGACAGCAAGGACGCGGTC
GCTGTGGACGGCCACTTTGTGGTGTCGGAGCGCGGGTCGTCGGACGAGCG
CGCGAGCCCCACCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCG
CCGCCGTGGCCGTGGCCGTGGCCACCGGCGGCAGCAGCAGCTGCCGCAGC
GACGGCGACGGCCGCAGCTGCGGCGCCGACGAGCACGAGCTCGAGGATCT
ACGCCGTCTGGACGACGGCGACATGGCGCTGGCCTCCTTCTCGGACATGG
ACGACTAA
back to top

protein sequence of Gchil3794.t1

>Gchil3794.t1 ID=Gchil3794.t1|Name=Gchil3794.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=286bp
MKMARLARQNMEAGQPIQMPPGMRPVIELAVGNKSTIVTITADQTIKLAS
KSVTDISNIDATIVSALSASQTQYQCELRRRAALRAAREREHSAVAPAAA
AAAAAVTHDHHHHHDALLLKRSSACSSEGTHSADDARHGAPRPTATTTSC
DPYLDYIGTATDAKDDDDMHMPMPMHMHMTMEHPFAAELSSTLGDSKDAV
AVDGHFVVSERGSSDERASPTAAAAAAAAAAAAAAVAVAVATGGSSSCRS
DGDGRSCGADEHELEDLRRLDDGDMALASFSDMDD*
back to top

mRNA from alignment at tig00000010_pilon:422638..423495-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3794.t1 ID=Gchil3794.t1|Name=Gchil3794.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=858bp|location=Sequence derived from alignment at tig00000010_pilon:422638..423495- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGATGGCTCGTCTCGCGCGCCAGAACATGGAGGCCGGACAGCCCAT
TCAGATGCCGCCCGGCATGCGCCCCGTCATCGAGCTCGCCGTGGGAAACA
AGTCCACCATCGTCACCATTACTGCCGACCAGACCATCAAGCTCGCCAGC
AAGTCTGTCACCGACATATCCAACATCGATGCCACCATTGTGAGCGCCCT
CTCAGCCTCGCAGACGCAGTATCAGTGTGAGCTGCGCCGCCGCGCCGCTC
TACGCGCCGCGCGCGAGCGCGAGCACTCTGCTGTCGCCCCGGCCGCCGCC
GCCGCCGCCGCCGCCGTCACACACGACCACCACCACCATCACGACGCTCT
GCTGCTCAAGCGCTCCAGCGCGTGTAGCTCGGAGGGCACGCACTCTGCAG
ACGACGCGCGCCATGGGGCGCCGCGACCCACCGCCACTACTACTAGTTGC
GATCCCTATCTGGACTACATTGGCACGGCCACTGATGCAAAGGACGACGA
CGATATGCACATGCCCATGCCCATGCACATGCACATGACCATGGAACACC
CGTTTGCGGCTGAGCTAAGTAGCACGCTGGGCGACAGCAAGGACGCGGTC
GCTGTGGACGGCCACTTTGTGGTGTCGGAGCGCGGGTCGTCGGACGAGCG
CGCGAGCCCCACCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCG
CCGCCGTGGCCGTGGCCGTGGCCACCGGCGGCAGCAGCAGCTGCCGCAGC
GACGGCGACGGCCGCAGCTGCGGCGCCGACGAGCACGAGCTCGAGGATCT
ACGCCGTCTGGACGACGGCGACATGGCGCTGGCCTCCTTCTCGGACATGG
ACGACTAA
back to top

Coding sequence (CDS) from alignment at tig00000010_pilon:422638..423495-

>Gchil3794.t1 ID=Gchil3794.t1|Name=Gchil3794.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=858bp|location=Sequence derived from alignment at tig00000010_pilon:422638..423495- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGATGGCTCGTCTCGCGCGCCAGAACATGGAGGCCGGACAGCCCAT
TCAGATGCCGCCCGGCATGCGCCCCGTCATCGAGCTCGCCGTGGGAAACA
AGTCCACCATCGTCACCATTACTGCCGACCAGACCATCAAGCTCGCCAGC
AAGTCTGTCACCGACATATCCAACATCGATGCCACCATTGTGAGCGCCCT
CTCAGCCTCGCAGACGCAGTATCAGTGTGAGCTGCGCCGCCGCGCCGCTC
TACGCGCCGCGCGCGAGCGCGAGCACTCTGCTGTCGCCCCGGCCGCCGCC
GCCGCCGCCGCCGCCGTCACACACGACCACCACCACCATCACGACGCTCT
GCTGCTCAAGCGCTCCAGCGCGTGTAGCTCGGAGGGCACGCACTCTGCAG
ACGACGCGCGCCATGGGGCGCCGCGACCCACCGCCACTACTACTAGTTGC
GATCCCTATCTGGACTACATTGGCACGGCCACTGATGCAAAGGACGACGA
CGATATGCACATGCCCATGCCCATGCACATGCACATGACCATGGAACACC
CGTTTGCGGCTGAGCTAAGTAGCACGCTGGGCGACAGCAAGGACGCGGTC
GCTGTGGACGGCCACTTTGTGGTGTCGGAGCGCGGGTCGTCGGACGAGCG
CGCGAGCCCCACCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCG
CCGCCGTGGCCGTGGCCGTGGCCACCGGCGGCAGCAGCAGCTGCCGCAGC
GACGGCGACGGCCGCAGCTGCGGCGCCGACGAGCACGAGCTCGAGGATCT
ACGCCGTCTGGACGACGGCGACATGGCGCTGGCCTCCTTCTCGGACATGG
ACGACTAA
back to top