Gchil3790.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3790.t1
Unique NameGchil3790.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length180
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:416904..417549 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706095.1
PFAMsArf
Max annot lvl2759|Eukaryota
KEGG koko:K07937,ko:K07977
KEGG Pathwayko04072,ko04144,ko05110,ko05134,map04072,map04144,map05110,map05134
Evalue4.49e-101
EggNOG OGsCOG1100@1|root,KOG0070@2759|Eukaryota
DescriptionGTP binding
COG categoryBDLTU
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3790Gchil3790Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 416904..417549 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3790.t1Gchil3790.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 416904..417549 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3790.t1.stop1Gchil3790.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 416904..416906 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3790.t1.CDS1Gchil3790.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 416904..417380 -
Gchil3790.t1.CDS2Gchil3790.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 417487..417549 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3790.t1.exon1Gchil3790.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 416904..417380 -
Gchil3790.t1.exon2Gchil3790.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 417487..417549 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3790.t1.intron1Gchil3790.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000010_pilon 417381..417486 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3790.t1.start1Gchil3790.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 417547..417549 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3790.t1 ID=Gchil3790.t1|Name=Gchil3790.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=180bp
MGNIISLFTSFLGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF
NVESVTYKNIDFTVWDVGGQDKIRPLWRHYFQNTHGVIFVVDSNDRERFP
EAREELNKMMVEDELKHAVLLVFANKQDLPNAASTADIVNALGLPELRSH
PWYIMSCCATNGAGLYEGLDWLANKLKDV*
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spliced messenger RNA

>Gchil3790.t1 ID=Gchil3790.t1|Name=Gchil3790.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=540bp|location=Sequence derived from alignment at tig00000010_pilon:416904..417549- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAAACATTATCTCGCTCTTCACCAGCTTTCTCGGCAAGAAAGAAAT
GCGTATCCTTATGGTTGGACTAGACGCTGCCGGAAAGACGACAATCCTTT
ACAAACTCAAGTTAGGCGAAATCGTCACCACCATCCCCACCATCGGTTTC
AACGTCGAGTCTGTCACTTACAAGAACATTGACTTCACCGTGTGGGATGT
TGGCGGACAGGACAAGATTCGACCCCTGTGGAGACACTACTTCCAGAACA
CCCACGGCGTAATATTTGTAGTTGATAGCAATGATCGTGAAAGATTCCCA
GAAGCCCGCGAGGAACTCAACAAAATGATGGTGGAAGACGAGCTCAAACA
TGCCGTCCTGCTCGTCTTCGCCAACAAACAGGATCTACCGAATGCCGCAA
GCACTGCCGACATTGTCAACGCCCTTGGTCTTCCAGAGTTGCGCAGCCAC
CCGTGGTACATCATGTCCTGTTGCGCAACCAACGGAGCCGGCTTGTATGA
GGGTCTCGACTGGCTGGCTAACAAGCTCAAAGATGTCTGA
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protein sequence of Gchil3790.t1

>Gchil3790.t1 ID=Gchil3790.t1|Name=Gchil3790.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=180bp
MGNIISLFTSFLGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF
NVESVTYKNIDFTVWDVGGQDKIRPLWRHYFQNTHGVIFVVDSNDRERFP
EAREELNKMMVEDELKHAVLLVFANKQDLPNAASTADIVNALGLPELRSH
PWYIMSCCATNGAGLYEGLDWLANKLKDV*
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mRNA from alignment at tig00000010_pilon:416904..417549-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3790.t1 ID=Gchil3790.t1|Name=Gchil3790.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=646bp|location=Sequence derived from alignment at tig00000010_pilon:416904..417549- (Gracilaria chilensis NLEC103_M9 male)
ATGGGAAACATTATCTCGCTCTTCACCAGCTTTCTCGGCAAGAAAGAAAT
GCGTATCCTTATGGTATGTCCGCCCTGCGCCCTTTAGCTTGTGTCCCGCA
TTCCCACCCTTCACCTCCCTGACAACTCACTCCCTCACCCGCCATTCGTG
CCCCGCCGCTCGCTCACAGGTTGGACTAGACGCTGCCGGAAAGACGACAA
TCCTTTACAAACTCAAGTTAGGCGAAATCGTCACCACCATCCCCACCATC
GGTTTCAACGTCGAGTCTGTCACTTACAAGAACATTGACTTCACCGTGTG
GGATGTTGGCGGACAGGACAAGATTCGACCCCTGTGGAGACACTACTTCC
AGAACACCCACGGCGTAATATTTGTAGTTGATAGCAATGATCGTGAAAGA
TTCCCAGAAGCCCGCGAGGAACTCAACAAAATGATGGTGGAAGACGAGCT
CAAACATGCCGTCCTGCTCGTCTTCGCCAACAAACAGGATCTACCGAATG
CCGCAAGCACTGCCGACATTGTCAACGCCCTTGGTCTTCCAGAGTTGCGC
AGCCACCCGTGGTACATCATGTCCTGTTGCGCAACCAACGGAGCCGGCTT
GTATGAGGGTCTCGACTGGCTGGCTAACAAGCTCAAAGATGTCTGA
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Coding sequence (CDS) from alignment at tig00000010_pilon:416904..417549-

>Gchil3790.t1 ID=Gchil3790.t1|Name=Gchil3790.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=540bp|location=Sequence derived from alignment at tig00000010_pilon:416904..417549- (Gracilaria chilensis NLEC103_M9 male)
ATGGGAAACATTATCTCGCTCTTCACCAGCTTTCTCGGCAAGAAAGAAAT
GCGTATCCTTATGGTTGGACTAGACGCTGCCGGAAAGACGACAATCCTTT
ACAAACTCAAGTTAGGCGAAATCGTCACCACCATCCCCACCATCGGTTTC
AACGTCGAGTCTGTCACTTACAAGAACATTGACTTCACCGTGTGGGATGT
TGGCGGACAGGACAAGATTCGACCCCTGTGGAGACACTACTTCCAGAACA
CCCACGGCGTAATATTTGTAGTTGATAGCAATGATCGTGAAAGATTCCCA
GAAGCCCGCGAGGAACTCAACAAAATGATGGTGGAAGACGAGCTCAAACA
TGCCGTCCTGCTCGTCTTCGCCAACAAACAGGATCTACCGAATGCCGCAA
GCACTGCCGACATTGTCAACGCCCTTGGTCTTCCAGAGTTGCGCAGCCAC
CCGTGGTACATCATGTCCTGTTGCGCAACCAACGGAGCCGGCTTGTATGA
GGGTCTCGACTGGCTGGCTAACAAGCTCAAAGATGTCTGA
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