Gchil3785.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3785.t1
Unique NameGchil3785.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length270
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:346897..347794 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog164328.Phyra76755
PFAMsCBM_25,Gal_mutarotas_2,Glyco_hydro_31,NtCtMGAM_N
Max annot lvl4776|Peronosporales
KEGG rclassRC00028,RC00049,RC00077
KEGG koko:K12316
KEGG ReactionR00028,R00801,R00802
KEGG Pathwayko00052,ko00500,ko01100,ko04142,map00052,map00500,map01100,map04142
Evalue1.46e-05
EggNOG OGsCOG1501@1|root,KOG1065@2759|Eukaryota,3QDUJ@4776|Peronosporales
EC3.2.1.20
DescriptionBelongs to the glycosyl hydrolase 31 family
COG categoryG
CAZyGH31
BRITEko00000,ko00001,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3785Gchil3785Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 346897..347794 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3785.t1Gchil3785.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 346897..347794 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3785.t1.start1Gchil3785.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 346897..346899 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3785.t1.CDS1Gchil3785.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 346897..347169 +
Gchil3785.t1.CDS2Gchil3785.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 347258..347794 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3785.t1.exon1Gchil3785.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 346897..347169 +
Gchil3785.t1.exon2Gchil3785.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 347258..347794 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3785.t1.intron1Gchil3785.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000010_pilon 347170..347257 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3785.t1.stop1Gchil3785.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 347792..347794 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3785.t1 ID=Gchil3785.t1|Name=Gchil3785.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=270bp
MSEALLRSFWRDERYPTRTRLSCLSYCFCRKALGAKSVVMDKDHDHPNTA
FRDTEHCKAWIEIYHSRPSWKISQISFKKDFDEWVPFGKFQLIDAAGIKP
GFQVFRIRAKRLEFKLASKTGSEIDNNVGRNYVVESDGRYVVESGNGCRR
VSDAQVADCLRAQRPNDVYIELMFNANPIWRNCYVTFSMPGEDALEWHKQ
QMELMDESGLWFQRFEARYGMNCAFTDGNVEWDSNINLNYQVRLPGRYVL
GQGGISYLGPSGLDTHLQT*
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spliced messenger RNA

>Gchil3785.t1 ID=Gchil3785.t1|Name=Gchil3785.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=810bp|location=Sequence derived from alignment at tig00000010_pilon:346897..347794+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGAAGCGCTCCTCCGCAGTTTTTGGCGAGACGAAAGATATCCAAC
CCGCACCCGACTGAGCTGTTTATCATACTGTTTCTGCCGCAAAGCTCTTG
GAGCAAAGTCAGTTGTCATGGACAAAGACCACGATCACCCGAACACGGCG
TTTCGCGACACTGAACATTGCAAGGCTTGGATTGAAATCTACCATTCAAG
ACCCAGTTGGAAAATTTCTCAGATATCGTTTAAGAAAGACTTTGACGAGT
GGGTTCCGTTTGGAAAGTTTCAGTTGATAGATGCGGCAGGAATAAAGCCT
GGATTTCAGGTATTTCGCATCAGAGCAAAGCGACTTGAATTCAAGTTGGC
GAGCAAAACAGGATCGGAGATTGACAATAATGTGGGGCGGAATTATGTGG
TTGAATCTGATGGGCGTTATGTAGTTGAGAGCGGGAACGGTTGTAGACGA
GTTTCTGACGCGCAAGTTGCAGACTGTCTTCGAGCCCAAAGGCCAAATGA
TGTATACATAGAGCTGATGTTCAACGCCAACCCCATTTGGCGCAACTGCT
ATGTGACGTTCAGCATGCCAGGCGAGGATGCATTAGAATGGCATAAACAA
CAGATGGAATTGATGGATGAATCTGGACTTTGGTTTCAACGATTTGAAGC
CAGATATGGAATGAACTGTGCGTTTACAGATGGCAACGTAGAGTGGGACA
GCAACATCAATCTTAACTATCAAGTCCGATTACCAGGTAGGTATGTTTTG
GGGCAGGGAGGCATTTCGTACCTGGGACCGTCTGGCCTTGATACTCATTT
GCAGACATAG
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protein sequence of Gchil3785.t1

>Gchil3785.t1 ID=Gchil3785.t1|Name=Gchil3785.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=270bp
MSEALLRSFWRDERYPTRTRLSCLSYCFCRKALGAKSVVMDKDHDHPNTA
FRDTEHCKAWIEIYHSRPSWKISQISFKKDFDEWVPFGKFQLIDAAGIKP
GFQVFRIRAKRLEFKLASKTGSEIDNNVGRNYVVESDGRYVVESGNGCRR
VSDAQVADCLRAQRPNDVYIELMFNANPIWRNCYVTFSMPGEDALEWHKQ
QMELMDESGLWFQRFEARYGMNCAFTDGNVEWDSNINLNYQVRLPGRYVL
GQGGISYLGPSGLDTHLQT*
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mRNA from alignment at tig00000010_pilon:346897..347794+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3785.t1 ID=Gchil3785.t1|Name=Gchil3785.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=898bp|location=Sequence derived from alignment at tig00000010_pilon:346897..347794+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGTGAAGCGCTCCTCCGCAGTTTTTGGCGAGACGAAAGATATCCAAC
CCGCACCCGACTGAGCTGTTTATCATACTGTTTCTGCCGCAAAGCTCTTG
GAGCAAAGTCAGTTGTCATGGACAAAGACCACGATCACCCGAACACGGCG
TTTCGCGACACTGAACATTGCAAGGCTTGGATTGAAATCTACCATTCAAG
ACCCAGTTGGAAAATTTCTCAGATATCGTTTAAGAAAGACTTTGACGAGT
GGGTTCCGTTTGGAAAGTTTCAGGTTAGTTTTTCCATCAATCAAAAATTC
CCCCTCGCAACAATGAAAGAGATCATGCTCACAGCTAAGCATTGCCTGGT
AACTTAAAAAGTTGATAGATGCGGCAGGAATAAAGCCTGGATTTCAGGTA
TTTCGCATCAGAGCAAAGCGACTTGAATTCAAGTTGGCGAGCAAAACAGG
ATCGGAGATTGACAATAATGTGGGGCGGAATTATGTGGTTGAATCTGATG
GGCGTTATGTAGTTGAGAGCGGGAACGGTTGTAGACGAGTTTCTGACGCG
CAAGTTGCAGACTGTCTTCGAGCCCAAAGGCCAAATGATGTATACATAGA
GCTGATGTTCAACGCCAACCCCATTTGGCGCAACTGCTATGTGACGTTCA
GCATGCCAGGCGAGGATGCATTAGAATGGCATAAACAACAGATGGAATTG
ATGGATGAATCTGGACTTTGGTTTCAACGATTTGAAGCCAGATATGGAAT
GAACTGTGCGTTTACAGATGGCAACGTAGAGTGGGACAGCAACATCAATC
TTAACTATCAAGTCCGATTACCAGGTAGGTATGTTTTGGGGCAGGGAGGC
ATTTCGTACCTGGGACCGTCTGGCCTTGATACTCATTTGCAGACATAG
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Coding sequence (CDS) from alignment at tig00000010_pilon:346897..347794+

>Gchil3785.t1 ID=Gchil3785.t1|Name=Gchil3785.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=810bp|location=Sequence derived from alignment at tig00000010_pilon:346897..347794+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGTGAAGCGCTCCTCCGCAGTTTTTGGCGAGACGAAAGATATCCAAC
CCGCACCCGACTGAGCTGTTTATCATACTGTTTCTGCCGCAAAGCTCTTG
GAGCAAAGTCAGTTGTCATGGACAAAGACCACGATCACCCGAACACGGCG
TTTCGCGACACTGAACATTGCAAGGCTTGGATTGAAATCTACCATTCAAG
ACCCAGTTGGAAAATTTCTCAGATATCGTTTAAGAAAGACTTTGACGAGT
GGGTTCCGTTTGGAAAGTTTCAGTTGATAGATGCGGCAGGAATAAAGCCT
GGATTTCAGGTATTTCGCATCAGAGCAAAGCGACTTGAATTCAAGTTGGC
GAGCAAAACAGGATCGGAGATTGACAATAATGTGGGGCGGAATTATGTGG
TTGAATCTGATGGGCGTTATGTAGTTGAGAGCGGGAACGGTTGTAGACGA
GTTTCTGACGCGCAAGTTGCAGACTGTCTTCGAGCCCAAAGGCCAAATGA
TGTATACATAGAGCTGATGTTCAACGCCAACCCCATTTGGCGCAACTGCT
ATGTGACGTTCAGCATGCCAGGCGAGGATGCATTAGAATGGCATAAACAA
CAGATGGAATTGATGGATGAATCTGGACTTTGGTTTCAACGATTTGAAGC
CAGATATGGAATGAACTGTGCGTTTACAGATGGCAACGTAGAGTGGGACA
GCAACATCAATCTTAACTATCAAGTCCGATTACCAGGTAGGTATGTTTTG
GGGCAGGGAGGCATTTCGTACCTGGGACCGTCTGGCCTTGATACTCATTT
GCAGACATAG
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