Gchil3780.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3780.t1
Unique Name	Gchil3780.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	317

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000010_pilon	contig	tig00000010_pilon:335568..336518 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	671143.DAMO_0316
PFAMs	Abi
Max annot lvl	2\|Bacteria
KEGG ko	ko:K07052
Evalue	1.6e-16
EggNOG OGs	COG1266@1\|root,COG1266@2\|Bacteria
Description	CAAX protease self-immunity
COG category	V
BRITE	ko00000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3780	Gchil3780	Gracilaria chilensis NLEC103_M9 male	gene	tig00000010_pilon 335568..336518 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3780.t1.start1	Gchil3780.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000010_pilon 335568..335570 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3780.t1.CDS1	Gchil3780.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000010_pilon 335568..336518 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3780.t1.exon1	Gchil3780.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000010_pilon 335568..336518 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3780.t1.stop1	Gchil3780.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000010_pilon 336516..336518 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3780.t1	Gchil3780.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000010_pilon 335568..336518 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000010_pilon:335568..336518+
coding sequence from alignment at tig00000010_pilon:335568..336518+

mRNA sequence

>Gchil3780.t1 ID=Gchil3780.t1|Name=Gchil3780.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=317bp
MPESGGRGNAMEGTASMIWTLLFLAYSSNTFLSEFSRGWSAVWTVVLVIL
PITLAGLPKVFERKPRALKNLLIYLAYGLLPSFIQLMQHGDLSSIASEAA
DFITVLVIWLPLELNLLTAELSATGRVTAWGQLTAALNIVNIFSILRPFS
EVPKARVLGYSYKFNIQDVMYGTLFAGVYTIVGMIVATVIRFARFSRPNH
LKLDREIPTVIGLYMISVTDELLFRGVMQNMLEQRLGPNSTVALIIAAVA
FGMTRLRKSKQGFTTPNLRYAAVATVCGLFSGLTWRRTGKVTASALTHAA
GDYLMWHIFLRKRNEV*

spliced messenger RNA

>Gchil3780.t1 ID=Gchil3780.t1|Name=Gchil3780.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=951bp|location=Sequence derived from alignment at tig00000010_pilon:335568..336518+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGAGTCTGGCGGGAGAGGTAATGCGATGGAGGGTACAGCCTCCAT
GATATGGACTCTTTTGTTTCTAGCTTACTCATCAAACACATTTCTCAGCG
AGTTTTCCAGAGGCTGGTCTGCCGTGTGGACTGTTGTTCTTGTAATCCTT
CCTATCACATTAGCAGGACTGCCCAAGGTCTTCGAACGAAAACCAAGAGC
CCTCAAGAACCTTCTTATTTATTTAGCTTATGGGCTGCTCCCATCCTTTA
TTCAGCTAATGCAGCACGGGGATCTTAGTTCAATAGCTTCTGAAGCAGCA
GACTTCATAACCGTTCTTGTTATATGGCTCCCCCTAGAGCTCAACTTGCT
CACGGCAGAGCTATCAGCGACAGGAAGAGTAACGGCGTGGGGTCAATTGA
CTGCTGCCTTGAACATCGTCAACATCTTCTCCATACTTCGACCATTCTCT
GAAGTACCCAAAGCTCGCGTTTTGGGATACTCTTATAAGTTCAATATCCA
AGATGTTATGTACGGAACCTTGTTTGCAGGGGTCTACACGATCGTCGGTA
TGATAGTAGCGACAGTAATCCGATTTGCTCGCTTTTCACGTCCCAACCAT
CTGAAGCTTGATCGCGAAATTCCAACAGTGATTGGTTTGTATATGATCTC
TGTCACCGATGAATTGCTTTTCCGCGGGGTGATGCAAAATATGTTGGAGC
AGCGTCTGGGTCCGAACTCCACGGTTGCGCTTATCATTGCCGCTGTTGCG
TTCGGAATGACCCGGTTGCGCAAATCCAAGCAAGGATTTACTACTCCTAA
CTTGCGGTACGCCGCCGTTGCTACTGTGTGTGGCTTATTCAGCGGCTTAA
CATGGCGTAGAACAGGGAAGGTAACGGCCTCTGCTCTAACACATGCAGCC
GGCGATTACTTAATGTGGCACATCTTCCTAAGAAAGAGAAACGAGGTATA
A

protein sequence of Gchil3780.t1

>Gchil3780.t1 ID=Gchil3780.t1|Name=Gchil3780.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=317bp
MPESGGRGNAMEGTASMIWTLLFLAYSSNTFLSEFSRGWSAVWTVVLVIL
PITLAGLPKVFERKPRALKNLLIYLAYGLLPSFIQLMQHGDLSSIASEAA
DFITVLVIWLPLELNLLTAELSATGRVTAWGQLTAALNIVNIFSILRPFS
EVPKARVLGYSYKFNIQDVMYGTLFAGVYTIVGMIVATVIRFARFSRPNH
LKLDREIPTVIGLYMISVTDELLFRGVMQNMLEQRLGPNSTVALIIAAVA
FGMTRLRKSKQGFTTPNLRYAAVATVCGLFSGLTWRRTGKVTASALTHAA
GDYLMWHIFLRKRNEV*

mRNA from alignment at tig00000010_pilon:335568..336518+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3780.t1 ID=Gchil3780.t1|Name=Gchil3780.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=951bp|location=Sequence derived from alignment at tig00000010_pilon:335568..336518+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCCGAGTCTGGCGGGAGAGGTAATGCGATGGAGGGTACAGCCTCCAT
GATATGGACTCTTTTGTTTCTAGCTTACTCATCAAACACATTTCTCAGCG
AGTTTTCCAGAGGCTGGTCTGCCGTGTGGACTGTTGTTCTTGTAATCCTT
CCTATCACATTAGCAGGACTGCCCAAGGTCTTCGAACGAAAACCAAGAGC
CCTCAAGAACCTTCTTATTTATTTAGCTTATGGGCTGCTCCCATCCTTTA
TTCAGCTAATGCAGCACGGGGATCTTAGTTCAATAGCTTCTGAAGCAGCA
GACTTCATAACCGTTCTTGTTATATGGCTCCCCCTAGAGCTCAACTTGCT
CACGGCAGAGCTATCAGCGACAGGAAGAGTAACGGCGTGGGGTCAATTGA
CTGCTGCCTTGAACATCGTCAACATCTTCTCCATACTTCGACCATTCTCT
GAAGTACCCAAAGCTCGCGTTTTGGGATACTCTTATAAGTTCAATATCCA
AGATGTTATGTACGGAACCTTGTTTGCAGGGGTCTACACGATCGTCGGTA
TGATAGTAGCGACAGTAATCCGATTTGCTCGCTTTTCACGTCCCAACCAT
CTGAAGCTTGATCGCGAAATTCCAACAGTGATTGGTTTGTATATGATCTC
TGTCACCGATGAATTGCTTTTCCGCGGGGTGATGCAAAATATGTTGGAGC
AGCGTCTGGGTCCGAACTCCACGGTTGCGCTTATCATTGCCGCTGTTGCG
TTCGGAATGACCCGGTTGCGCAAATCCAAGCAAGGATTTACTACTCCTAA
CTTGCGGTACGCCGCCGTTGCTACTGTGTGTGGCTTATTCAGCGGCTTAA
CATGGCGTAGAACAGGGAAGGTAACGGCCTCTGCTCTAACACATGCAGCC
GGCGATTACTTAATGTGGCACATCTTCCTAAGAAAGAGAAACGAGGTATA
A

Coding sequence (CDS) from alignment at tig00000010_pilon:335568..336518+

>Gchil3780.t1 ID=Gchil3780.t1|Name=Gchil3780.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=951bp|location=Sequence derived from alignment at tig00000010_pilon:335568..336518+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCCGAGTCTGGCGGGAGAGGTAATGCGATGGAGGGTACAGCCTCCAT
GATATGGACTCTTTTGTTTCTAGCTTACTCATCAAACACATTTCTCAGCG
AGTTTTCCAGAGGCTGGTCTGCCGTGTGGACTGTTGTTCTTGTAATCCTT
CCTATCACATTAGCAGGACTGCCCAAGGTCTTCGAACGAAAACCAAGAGC
CCTCAAGAACCTTCTTATTTATTTAGCTTATGGGCTGCTCCCATCCTTTA
TTCAGCTAATGCAGCACGGGGATCTTAGTTCAATAGCTTCTGAAGCAGCA
GACTTCATAACCGTTCTTGTTATATGGCTCCCCCTAGAGCTCAACTTGCT
CACGGCAGAGCTATCAGCGACAGGAAGAGTAACGGCGTGGGGTCAATTGA
CTGCTGCCTTGAACATCGTCAACATCTTCTCCATACTTCGACCATTCTCT
GAAGTACCCAAAGCTCGCGTTTTGGGATACTCTTATAAGTTCAATATCCA
AGATGTTATGTACGGAACCTTGTTTGCAGGGGTCTACACGATCGTCGGTA
TGATAGTAGCGACAGTAATCCGATTTGCTCGCTTTTCACGTCCCAACCAT
CTGAAGCTTGATCGCGAAATTCCAACAGTGATTGGTTTGTATATGATCTC
TGTCACCGATGAATTGCTTTTCCGCGGGGTGATGCAAAATATGTTGGAGC
AGCGTCTGGGTCCGAACTCCACGGTTGCGCTTATCATTGCCGCTGTTGCG
TTCGGAATGACCCGGTTGCGCAAATCCAAGCAAGGATTTACTACTCCTAA
CTTGCGGTACGCCGCCGTTGCTACTGTGTGTGGCTTATTCAGCGGCTTAA
CATGGCGTAGAACAGGGAAGGTAACGGCCTCTGCTCTAACACATGCAGCC
GGCGATTACTTAATGTGGCACATCTTCCTAAGAAAGAGAAACGAGGTATA
A