Gchil3778.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3778.t1
Unique Name	Gchil3778.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	620

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000010_pilon	contig	tig00000010_pilon:332226..334085 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703672.1
Preferred name	MTHFR1
PFAMs	MTHFR
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00081
KEGG ko	ko:K00297,ko:K10901
KEGG Reaction	R01224,R07168
KEGG Pathway	ko00670,ko00720,ko01100,ko01120,ko01200,ko01523,ko03440,ko03460,map00670,map00720,map01100,map01120,map01200,map01523,map03440,map03460
KEGG Module	M00295,M00377,M00414
GOs	GO:0003674,GO:0003824,GO:0004489,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114
Evalue	4.15e-309
EggNOG OGs	COG0685@1\|root,KOG0564@2759\|Eukaryota
EC	1.5.1.20,3.6.4.12
Description	methylenetetrahydrofolate reductase (NAD(P)H) activity
COG category	E
BRITE	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3778	Gchil3778	Gracilaria chilensis NLEC103_M9 male	gene	tig00000010_pilon 332226..334085 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3778.t1.start1	Gchil3778.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000010_pilon 332226..332228 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3778.t1.CDS1	Gchil3778.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000010_pilon 332226..334085 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3778.t1.exon1	Gchil3778.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000010_pilon 332226..334085 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3778.t1.stop1	Gchil3778.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000010_pilon 334083..334085 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3778.t1	Gchil3778.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000010_pilon 332226..334085 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000010_pilon:332226..334085+
coding sequence from alignment at tig00000010_pilon:332226..334085+

mRNA sequence

>Gchil3778.t1 ID=Gchil3778.t1|Name=Gchil3778.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=620bp
MNGSLPSVSFDSDPNLRYLPRIADKIRHRAEENRPFFSFEYFPPKTETGV
SNLYQRVERMTAVEPLFCDVTWGAGGSTSGLTLELSGNIQKYLGVDVMMH
LTCTNMPSGKVLEGLEGAKTRGIRNILALRGDPPAGKEWSKCEDGFEHGT
DLVRFIRANYGDYFGICVAGYPEGHPAGFLDGKITMKQEMEYLKEKVEAG
ADFIITQMFYDVDTFLGFVRDCRDAGITVPILPGILPIQNYNGFKRMTGF
CKTYVPQAILDAMEPIKDDDLAVKDFGIRLGVDMCKRILKSGLCPGIHFY
SLNLENSVMGIIDKLNLIPRTESIRSLPWRPATVDKRRNENVRPIYWANR
PKSYLDRTSTWDDFPNGRWGDNQSPAYGDLSDYHLLGGGGWASATQKTEA
AKLYGEIKGFDDVANVFVRFQKGELKRLPWSETEELATETSVISAPLLWL
NRNGLLTINSQPRVNAAPSADVTVGWGSNGGYVYQKAYVEFFAKSEIVDA
MFEAASNYPSLTIYAATAGSDELRTTAKQKSTCAVTWGVFPDREIVQPTV
VDPESFLVWKNEAFDVWTNVWADLYDENSSSRPILKELRDSLYLVNVIDN
DFVGGDIFAIFKALLSQSV*

spliced messenger RNA

>Gchil3778.t1 ID=Gchil3778.t1|Name=Gchil3778.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1860bp|location=Sequence derived from alignment at tig00000010_pilon:332226..334085+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGGATCTTTGCCAAGCGTTTCTTTCGATTCTGATCCGAATCTTCG
TTACTTGCCGCGAATTGCGGACAAGATTCGCCATCGCGCTGAGGAAAACC
GCCCTTTCTTTTCCTTTGAATACTTTCCCCCAAAGACCGAAACTGGCGTC
AGTAACCTTTATCAACGTGTAGAGCGTATGACCGCCGTAGAGCCCCTTTT
CTGTGATGTCACCTGGGGCGCCGGTGGGTCTACCAGCGGCTTGACTCTTG
AGCTCTCTGGGAACATTCAAAAGTACCTTGGAGTTGACGTCATGATGCAC
TTGACGTGCACCAACATGCCATCGGGCAAGGTCCTGGAGGGTCTGGAGGG
CGCAAAGACTAGAGGCATCCGAAACATTCTTGCCTTGCGTGGCGACCCAC
CGGCCGGAAAGGAATGGTCTAAATGCGAGGATGGTTTCGAACATGGTACA
GATCTTGTTCGTTTTATCCGTGCCAACTACGGCGATTACTTTGGAATTTG
CGTAGCAGGCTATCCAGAGGGGCATCCTGCTGGTTTCTTGGATGGTAAGA
TTACGATGAAACAAGAAATGGAATATTTGAAAGAAAAAGTTGAAGCAGGA
GCTGATTTCATCATTACTCAGATGTTTTATGATGTAGACACCTTCCTCGG
CTTTGTTCGCGATTGTCGGGATGCTGGTATTACTGTTCCCATTTTGCCTG
GTATTCTTCCCATTCAAAACTATAATGGCTTCAAACGAATGACAGGATTC
TGCAAGACTTACGTTCCTCAGGCTATCCTTGACGCAATGGAACCGATCAA
GGACGATGACCTGGCAGTGAAAGATTTTGGTATTCGTCTTGGTGTTGACA
TGTGCAAACGTATTCTGAAATCTGGTCTTTGCCCCGGCATTCACTTTTAT
TCACTCAACTTGGAAAATTCCGTTATGGGCATCATAGACAAGCTAAACCT
CATTCCAAGGACCGAGTCCATACGGTCTCTTCCATGGCGCCCGGCAACTG
TTGATAAACGCCGCAATGAAAATGTTCGTCCAATTTACTGGGCTAACAGG
CCTAAGTCGTACCTTGATCGTACATCGACTTGGGACGACTTTCCGAACGG
ACGTTGGGGGGATAATCAATCTCCGGCTTACGGAGATCTTTCGGATTATC
ACTTGTTGGGTGGCGGAGGCTGGGCTTCTGCTACACAAAAAACCGAAGCT
GCAAAGCTCTATGGGGAGATCAAAGGCTTTGATGACGTGGCTAACGTATT
CGTGAGGTTCCAAAAGGGCGAGCTAAAGAGGCTGCCATGGTCGGAAACTG
AGGAACTGGCCACTGAGACATCAGTCATCTCTGCGCCACTGTTGTGGTTG
AATCGCAATGGATTGTTGACGATAAACTCCCAGCCTCGTGTGAACGCGGC
CCCCTCGGCTGATGTCACTGTTGGATGGGGCAGCAATGGAGGATATGTAT
ATCAGAAAGCCTATGTTGAATTTTTCGCCAAATCGGAAATTGTTGATGCC
ATGTTTGAGGCCGCATCCAATTACCCTTCGCTGACCATTTATGCagctac
ggctgggagcgacgagctacgaactacagcCAAGCAGAAGTCCACCTGTG
CAGTGACGTGGGGTGTCTTCCCGGACCGTGAGATTGTGCAACCAACTGTC
GTTGATCCTGAGTCTTTCCTTGTGTGGAAGAATGAAGCCTTTGATGTATG
GACCAACGTCTGGGCAGATCTTTACGATGAGAATAGTTCATCTCGACCCA
TCCTGAAGGAGTTACGAGATTCTCTTTATCTCGTTAACGTTATCGACAAC
GATTTTGTCGGTGGTGACATATTCGCTATCTTCAAGGCACTGTTGTCGCA
ATCAGTGTGA

protein sequence of Gchil3778.t1

>Gchil3778.t1 ID=Gchil3778.t1|Name=Gchil3778.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=620bp
MNGSLPSVSFDSDPNLRYLPRIADKIRHRAEENRPFFSFEYFPPKTETGV
SNLYQRVERMTAVEPLFCDVTWGAGGSTSGLTLELSGNIQKYLGVDVMMH
LTCTNMPSGKVLEGLEGAKTRGIRNILALRGDPPAGKEWSKCEDGFEHGT
DLVRFIRANYGDYFGICVAGYPEGHPAGFLDGKITMKQEMEYLKEKVEAG
ADFIITQMFYDVDTFLGFVRDCRDAGITVPILPGILPIQNYNGFKRMTGF
CKTYVPQAILDAMEPIKDDDLAVKDFGIRLGVDMCKRILKSGLCPGIHFY
SLNLENSVMGIIDKLNLIPRTESIRSLPWRPATVDKRRNENVRPIYWANR
PKSYLDRTSTWDDFPNGRWGDNQSPAYGDLSDYHLLGGGGWASATQKTEA
AKLYGEIKGFDDVANVFVRFQKGELKRLPWSETEELATETSVISAPLLWL
NRNGLLTINSQPRVNAAPSADVTVGWGSNGGYVYQKAYVEFFAKSEIVDA
MFEAASNYPSLTIYAATAGSDELRTTAKQKSTCAVTWGVFPDREIVQPTV
VDPESFLVWKNEAFDVWTNVWADLYDENSSSRPILKELRDSLYLVNVIDN
DFVGGDIFAIFKALLSQSV*

mRNA from alignment at tig00000010_pilon:332226..334085+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3778.t1 ID=Gchil3778.t1|Name=Gchil3778.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1860bp|location=Sequence derived from alignment at tig00000010_pilon:332226..334085+ (Gracilaria chilensis NLEC103_M9 male)
ATGAACGGATCTTTGCCAAGCGTTTCTTTCGATTCTGATCCGAATCTTCG
TTACTTGCCGCGAATTGCGGACAAGATTCGCCATCGCGCTGAGGAAAACC
GCCCTTTCTTTTCCTTTGAATACTTTCCCCCAAAGACCGAAACTGGCGTC
AGTAACCTTTATCAACGTGTAGAGCGTATGACCGCCGTAGAGCCCCTTTT
CTGTGATGTCACCTGGGGCGCCGGTGGGTCTACCAGCGGCTTGACTCTTG
AGCTCTCTGGGAACATTCAAAAGTACCTTGGAGTTGACGTCATGATGCAC
TTGACGTGCACCAACATGCCATCGGGCAAGGTCCTGGAGGGTCTGGAGGG
CGCAAAGACTAGAGGCATCCGAAACATTCTTGCCTTGCGTGGCGACCCAC
CGGCCGGAAAGGAATGGTCTAAATGCGAGGATGGTTTCGAACATGGTACA
GATCTTGTTCGTTTTATCCGTGCCAACTACGGCGATTACTTTGGAATTTG
CGTAGCAGGCTATCCAGAGGGGCATCCTGCTGGTTTCTTGGATGGTAAGA
TTACGATGAAACAAGAAATGGAATATTTGAAAGAAAAAGTTGAAGCAGGA
GCTGATTTCATCATTACTCAGATGTTTTATGATGTAGACACCTTCCTCGG
CTTTGTTCGCGATTGTCGGGATGCTGGTATTACTGTTCCCATTTTGCCTG
GTATTCTTCCCATTCAAAACTATAATGGCTTCAAACGAATGACAGGATTC
TGCAAGACTTACGTTCCTCAGGCTATCCTTGACGCAATGGAACCGATCAA
GGACGATGACCTGGCAGTGAAAGATTTTGGTATTCGTCTTGGTGTTGACA
TGTGCAAACGTATTCTGAAATCTGGTCTTTGCCCCGGCATTCACTTTTAT
TCACTCAACTTGGAAAATTCCGTTATGGGCATCATAGACAAGCTAAACCT
CATTCCAAGGACCGAGTCCATACGGTCTCTTCCATGGCGCCCGGCAACTG
TTGATAAACGCCGCAATGAAAATGTTCGTCCAATTTACTGGGCTAACAGG
CCTAAGTCGTACCTTGATCGTACATCGACTTGGGACGACTTTCCGAACGG
ACGTTGGGGGGATAATCAATCTCCGGCTTACGGAGATCTTTCGGATTATC
ACTTGTTGGGTGGCGGAGGCTGGGCTTCTGCTACACAAAAAACCGAAGCT
GCAAAGCTCTATGGGGAGATCAAAGGCTTTGATGACGTGGCTAACGTATT
CGTGAGGTTCCAAAAGGGCGAGCTAAAGAGGCTGCCATGGTCGGAAACTG
AGGAACTGGCCACTGAGACATCAGTCATCTCTGCGCCACTGTTGTGGTTG
AATCGCAATGGATTGTTGACGATAAACTCCCAGCCTCGTGTGAACGCGGC
CCCCTCGGCTGATGTCACTGTTGGATGGGGCAGCAATGGAGGATATGTAT
ATCAGAAAGCCTATGTTGAATTTTTCGCCAAATCGGAAATTGTTGATGCC
ATGTTTGAGGCCGCATCCAATTACCCTTCGCTGACCATTTATGCagctac
ggctgggagcgacgagctacgaactacagcCAAGCAGAAGTCCACCTGTG
CAGTGACGTGGGGTGTCTTCCCGGACCGTGAGATTGTGCAACCAACTGTC
GTTGATCCTGAGTCTTTCCTTGTGTGGAAGAATGAAGCCTTTGATGTATG
GACCAACGTCTGGGCAGATCTTTACGATGAGAATAGTTCATCTCGACCCA
TCCTGAAGGAGTTACGAGATTCTCTTTATCTCGTTAACGTTATCGACAAC
GATTTTGTCGGTGGTGACATATTCGCTATCTTCAAGGCACTGTTGTCGCA
ATCAGTGTGA

Coding sequence (CDS) from alignment at tig00000010_pilon:332226..334085+

>Gchil3778.t1 ID=Gchil3778.t1|Name=Gchil3778.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1860bp|location=Sequence derived from alignment at tig00000010_pilon:332226..334085+ (Gracilaria chilensis NLEC103_M9 male)
ATGAACGGATCTTTGCCAAGCGTTTCTTTCGATTCTGATCCGAATCTTCG
TTACTTGCCGCGAATTGCGGACAAGATTCGCCATCGCGCTGAGGAAAACC
GCCCTTTCTTTTCCTTTGAATACTTTCCCCCAAAGACCGAAACTGGCGTC
AGTAACCTTTATCAACGTGTAGAGCGTATGACCGCCGTAGAGCCCCTTTT
CTGTGATGTCACCTGGGGCGCCGGTGGGTCTACCAGCGGCTTGACTCTTG
AGCTCTCTGGGAACATTCAAAAGTACCTTGGAGTTGACGTCATGATGCAC
TTGACGTGCACCAACATGCCATCGGGCAAGGTCCTGGAGGGTCTGGAGGG
CGCAAAGACTAGAGGCATCCGAAACATTCTTGCCTTGCGTGGCGACCCAC
CGGCCGGAAAGGAATGGTCTAAATGCGAGGATGGTTTCGAACATGGTACA
GATCTTGTTCGTTTTATCCGTGCCAACTACGGCGATTACTTTGGAATTTG
CGTAGCAGGCTATCCAGAGGGGCATCCTGCTGGTTTCTTGGATGGTAAGA
TTACGATGAAACAAGAAATGGAATATTTGAAAGAAAAAGTTGAAGCAGGA
GCTGATTTCATCATTACTCAGATGTTTTATGATGTAGACACCTTCCTCGG
CTTTGTTCGCGATTGTCGGGATGCTGGTATTACTGTTCCCATTTTGCCTG
GTATTCTTCCCATTCAAAACTATAATGGCTTCAAACGAATGACAGGATTC
TGCAAGACTTACGTTCCTCAGGCTATCCTTGACGCAATGGAACCGATCAA
GGACGATGACCTGGCAGTGAAAGATTTTGGTATTCGTCTTGGTGTTGACA
TGTGCAAACGTATTCTGAAATCTGGTCTTTGCCCCGGCATTCACTTTTAT
TCACTCAACTTGGAAAATTCCGTTATGGGCATCATAGACAAGCTAAACCT
CATTCCAAGGACCGAGTCCATACGGTCTCTTCCATGGCGCCCGGCAACTG
TTGATAAACGCCGCAATGAAAATGTTCGTCCAATTTACTGGGCTAACAGG
CCTAAGTCGTACCTTGATCGTACATCGACTTGGGACGACTTTCCGAACGG
ACGTTGGGGGGATAATCAATCTCCGGCTTACGGAGATCTTTCGGATTATC
ACTTGTTGGGTGGCGGAGGCTGGGCTTCTGCTACACAAAAAACCGAAGCT
GCAAAGCTCTATGGGGAGATCAAAGGCTTTGATGACGTGGCTAACGTATT
CGTGAGGTTCCAAAAGGGCGAGCTAAAGAGGCTGCCATGGTCGGAAACTG
AGGAACTGGCCACTGAGACATCAGTCATCTCTGCGCCACTGTTGTGGTTG
AATCGCAATGGATTGTTGACGATAAACTCCCAGCCTCGTGTGAACGCGGC
CCCCTCGGCTGATGTCACTGTTGGATGGGGCAGCAATGGAGGATATGTAT
ATCAGAAAGCCTATGTTGAATTTTTCGCCAAATCGGAAATTGTTGATGCC
ATGTTTGAGGCCGCATCCAATTACCCTTCGCTGACCATTTATGCagctac
ggctgggagcgacgagctacgaactacagcCAAGCAGAAGTCCACCTGTG
CAGTGACGTGGGGTGTCTTCCCGGACCGTGAGATTGTGCAACCAACTGTC
GTTGATCCTGAGTCTTTCCTTGTGTGGAAGAATGAAGCCTTTGATGTATG
GACCAACGTCTGGGCAGATCTTTACGATGAGAATAGTTCATCTCGACCCA
TCCTGAAGGAGTTACGAGATTCTCTTTATCTCGTTAACGTTATCGACAAC
GATTTTGTCGGTGGTGACATATTCGCTATCTTCAAGGCACTGTTGTCGCA
ATCAGTGTGA