Gchil3776.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3776.t1
Unique Name	Gchil3776.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	292

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000010_pilon	contig	tig00000010_pilon:300657..301532 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	38654.XP_006017592.1
Preferred name	YJEFN3
PFAMs	GRIM-19,YjeF_N
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K11353
KEGG TC	3.D.1.6
KEGG Pathway	ko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG Module	M00146
Evalue	3.11e-33
EggNOG OGs	COG0062@1\|root,KOG2585@2759\|Eukaryota,38EZB@33154\|Opisthokonta,3BAVF@33208\|Metazoa,3CXYY@33213\|Bilateria,4891H@7711\|Chordata,48ZDM@7742\|Vertebrata
Description	yjeF N-terminal
COG category	G
BRITE	ko00000,ko00001,ko00002

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3776	Gchil3776	Gracilaria chilensis NLEC103_M9 male	gene	tig00000010_pilon 300657..301532 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3776.t1.start1	Gchil3776.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000010_pilon 300657..300659 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3776.t1.CDS1	Gchil3776.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000010_pilon 300657..301532 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3776.t1.exon1	Gchil3776.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000010_pilon 300657..301532 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3776.t1.stop1	Gchil3776.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000010_pilon 301530..301532 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3776.t1	Gchil3776.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000010_pilon 300657..301532 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000010_pilon:300657..301532+
coding sequence from alignment at tig00000010_pilon:300657..301532+

mRNA sequence

>Gchil3776.t1 ID=Gchil3776.t1|Name=Gchil3776.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=292bp
MALCGEWPQQETYAAFLLSPHYLSGRRKIFHSFAHGPVTRKQRFSIHGGT
CNRAAAARMAADPPRKGSGPRQESGSDDMKQKDVQPYVTPELAIQAQLDA
FSMAENDVLAVADMCAVGFVEAFMQCYTPQDSLSVFVVCGSGFNGLVGVF
SAKKLKEKGYDPVVHFSHPSKYVDMPSICSKFDIPLYEFVPTTIEFYFQV
IVDAMLGVGFDGGDIHPPYWQVFEMLVSTRRPIASIDAPSGWDLTIGPRA
IDRTADTFVKPDLLVSLGAPKLCSKAFAGAYHFVAGRHLPQ*

spliced messenger RNA

>Gchil3776.t1 ID=Gchil3776.t1|Name=Gchil3776.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=876bp|location=Sequence derived from alignment at tig00000010_pilon:300657..301532+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCTGTGTGGAGAGTGGCCGCAACAAGAAACATATGCGGCGTTTCT
TCTAAGTCCTCACTATCTTTCTGGGCGACGGAAAATCTTTCACTCTTTCG
CTCATGGCCCTGTAACACGGAAGCAGAGATTCTCAATTCATGGCGGAACT
TGTAACAGGGCTGCTGCTGCTCGTATGGCGGCGGATCCTCCTCGGAAAGG
ATCTGGACCTCGACAAGAATCTGGATCAGATGACATGAAGCAGAAAGACG
TGCAACCATATGTCACTCCAGAGTTGGCTATTCAAGCGCAGTTGGATGCA
TTTTCCATGGCTGAAAATGATGTATTGGCTGTGGCTGACATGTGTGCCGT
TGGTTTTGTGGAAGCGTTTATGCAGTGTTACACACCGCAAGAttctcttt
ctgtttttgttgtctgtggttctggttTTAATGGGCTTGTTGGTGTTTTC
TCAGCGAAAAAGCTGAAGGAGAAAGGCTACGATCCTGTGGTGCACTTCAG
CCATCCGTCGAAGTATGTCGATATGCCCTCAATTTGCAGCAAGTTTGATA
TTCCTCTCTATGAGTTTGTTCCGACCACAATTGAGTTTTATTTTCAGGTG
ATCGTTGATGCAATGCTTGGAGTAGGCTTTGATGGTGGAGATATTCATCC
CCCATATTGGCAAGTGTTTGAAATGTTGGTTTCTACACGAAGACCGATTG
CAAGCATAGATGCACCATCTGGATGGGATCTCACCATCGGACCACGCGCA
ATCGACCGTACGGCGGACACATTCGTCAAGCCAGACCTTCTTGTTTCTCT
TGGAGCTCCCAAGTTGTGTTCGAAGGCGTTTGCAGGAGCCTACCATTTCG
TAGCTGGCCGTCACCTTCCCCAATAG

protein sequence of Gchil3776.t1

>Gchil3776.t1 ID=Gchil3776.t1|Name=Gchil3776.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=292bp
MALCGEWPQQETYAAFLLSPHYLSGRRKIFHSFAHGPVTRKQRFSIHGGT
CNRAAAARMAADPPRKGSGPRQESGSDDMKQKDVQPYVTPELAIQAQLDA
FSMAENDVLAVADMCAVGFVEAFMQCYTPQDSLSVFVVCGSGFNGLVGVF
SAKKLKEKGYDPVVHFSHPSKYVDMPSICSKFDIPLYEFVPTTIEFYFQV
IVDAMLGVGFDGGDIHPPYWQVFEMLVSTRRPIASIDAPSGWDLTIGPRA
IDRTADTFVKPDLLVSLGAPKLCSKAFAGAYHFVAGRHLPQ*

mRNA from alignment at tig00000010_pilon:300657..301532+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3776.t1 ID=Gchil3776.t1|Name=Gchil3776.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=876bp|location=Sequence derived from alignment at tig00000010_pilon:300657..301532+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCCTGTGTGGAGAGTGGCCGCAACAAGAAACATATGCGGCGTTTCT
TCTAAGTCCTCACTATCTTTCTGGGCGACGGAAAATCTTTCACTCTTTCG
CTCATGGCCCTGTAACACGGAAGCAGAGATTCTCAATTCATGGCGGAACT
TGTAACAGGGCTGCTGCTGCTCGTATGGCGGCGGATCCTCCTCGGAAAGG
ATCTGGACCTCGACAAGAATCTGGATCAGATGACATGAAGCAGAAAGACG
TGCAACCATATGTCACTCCAGAGTTGGCTATTCAAGCGCAGTTGGATGCA
TTTTCCATGGCTGAAAATGATGTATTGGCTGTGGCTGACATGTGTGCCGT
TGGTTTTGTGGAAGCGTTTATGCAGTGTTACACACCGCAAGAttctcttt
ctgtttttgttgtctgtggttctggttTTAATGGGCTTGTTGGTGTTTTC
TCAGCGAAAAAGCTGAAGGAGAAAGGCTACGATCCTGTGGTGCACTTCAG
CCATCCGTCGAAGTATGTCGATATGCCCTCAATTTGCAGCAAGTTTGATA
TTCCTCTCTATGAGTTTGTTCCGACCACAATTGAGTTTTATTTTCAGGTG
ATCGTTGATGCAATGCTTGGAGTAGGCTTTGATGGTGGAGATATTCATCC
CCCATATTGGCAAGTGTTTGAAATGTTGGTTTCTACACGAAGACCGATTG
CAAGCATAGATGCACCATCTGGATGGGATCTCACCATCGGACCACGCGCA
ATCGACCGTACGGCGGACACATTCGTCAAGCCAGACCTTCTTGTTTCTCT
TGGAGCTCCCAAGTTGTGTTCGAAGGCGTTTGCAGGAGCCTACCATTTCG
TAGCTGGCCGTCACCTTCCCCAATAG

Coding sequence (CDS) from alignment at tig00000010_pilon:300657..301532+

>Gchil3776.t1 ID=Gchil3776.t1|Name=Gchil3776.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=876bp|location=Sequence derived from alignment at tig00000010_pilon:300657..301532+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCCTGTGTGGAGAGTGGCCGCAACAAGAAACATATGCGGCGTTTCT
TCTAAGTCCTCACTATCTTTCTGGGCGACGGAAAATCTTTCACTCTTTCG
CTCATGGCCCTGTAACACGGAAGCAGAGATTCTCAATTCATGGCGGAACT
TGTAACAGGGCTGCTGCTGCTCGTATGGCGGCGGATCCTCCTCGGAAAGG
ATCTGGACCTCGACAAGAATCTGGATCAGATGACATGAAGCAGAAAGACG
TGCAACCATATGTCACTCCAGAGTTGGCTATTCAAGCGCAGTTGGATGCA
TTTTCCATGGCTGAAAATGATGTATTGGCTGTGGCTGACATGTGTGCCGT
TGGTTTTGTGGAAGCGTTTATGCAGTGTTACACACCGCAAGAttctcttt
ctgtttttgttgtctgtggttctggttTTAATGGGCTTGTTGGTGTTTTC
TCAGCGAAAAAGCTGAAGGAGAAAGGCTACGATCCTGTGGTGCACTTCAG
CCATCCGTCGAAGTATGTCGATATGCCCTCAATTTGCAGCAAGTTTGATA
TTCCTCTCTATGAGTTTGTTCCGACCACAATTGAGTTTTATTTTCAGGTG
ATCGTTGATGCAATGCTTGGAGTAGGCTTTGATGGTGGAGATATTCATCC
CCCATATTGGCAAGTGTTTGAAATGTTGGTTTCTACACGAAGACCGATTG
CAAGCATAGATGCACCATCTGGATGGGATCTCACCATCGGACCACGCGCA
ATCGACCGTACGGCGGACACATTCGTCAAGCCAGACCTTCTTGTTTCTCT
TGGAGCTCCCAAGTTGTGTTCGAAGGCGTTTGCAGGAGCCTACCATTTCG
TAGCTGGCCGTCACCTTCCCCAATAG