Gchil3775.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3775.t1
Unique NameGchil3775.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length524
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:298541..300112 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog314271.RB2654_08177
PFAMsGlyco_transf_7C
Max annot lvl28211|Alphaproteobacteria
Evalue2.11e-43
EggNOG OGsCOG1216@1|root,COG1216@2|Bacteria,1MZBS@1224|Proteobacteria,2UEUD@28211|Alphaproteobacteria
DescriptionN-terminal domain of galactosyltransferase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3775Gchil3775Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 298541..300112 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3775.t1.start1Gchil3775.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 298541..298543 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3775.t1.CDS1Gchil3775.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 298541..300112 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3775.t1.exon1Gchil3775.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 298541..300112 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3775.t1.stop1Gchil3775.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 300110..300112 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3775.t1Gchil3775.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 298541..300112 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3775.t1 ID=Gchil3775.t1|Name=Gchil3775.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=524bp
MVMRRSAFWNVGGYDERIQTYGWDDEDLYTRLQASKMEKLNVSYDHVNHV
SHDDGKRAQRGVKFAQVQIDLNQLLLEKLPQWSSAFVNNNNSSKYETVSE
DSSGYHELEAIFVPNPLQKLVDSDVYEEAWAMALGRRLADDYQVPWDVLE
SMDCDNKEKLLRKIMSLQEELDGERTESRLTENETKPIIPLRARLLFVHC
MHGLGNRLRAIGSALAFARNTRRVPVIIWESDAHIAAEFDALFNTSDIVL
LNRFIPKWPFKDLHQYDKSWTEFKFYNYMEMEDGASKGELIKNDPSKHLY
YKGAYVLEAPEYSWWEVDNEELRNLEPVEMVRNHLKDLESQDLKNSIGVH
IRNRTLEKDIKNVNFNEEYGSEAASTMEHWRTMSSYKTFIAEMERILDEE
DNDVKFYVATDTFKILAIMNEKFPGKILRTERNCDDRDSECVKYAVIDMY
ALSRTKRLLGSNWSSYTEMAERLGGLKASLAGQDFGAPLNSKKMAVPEEV
EKSKSEEELVAEEQDRLRDSGRE*
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spliced messenger RNA

>Gchil3775.t1 ID=Gchil3775.t1|Name=Gchil3775.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1572bp|location=Sequence derived from alignment at tig00000010_pilon:298541..300112+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAATGAGAAGGAGTGCGTTTTGGAATGTCGGAGGCTATGACGAGCG
AATCCAAACATATGGATGGGATGATGAAGACTTATACACCCGTTTGCAGG
CTAGCAAGATGGAAAAACTTAACGTCAGCTACGATCACGTGAACCATGTG
TCGCATGATGATGGTAAGAGAGCACAACGAGGGGTCAAGTTTGCTCAAGT
GCAAATAGACCTAAACCAGCTCCTGCTGGAAAAGCTACCACAGTGGTCTT
CTGCCTTTGTCAATAATAATAATTCTTCGAAGTACGAGACCGTATCGGAG
GATAGCTCAGGATACCATGAACTGGAAGCCATCTTTGTTCCCAACCCTTT
ACAAAAACTTGTCGATTCTGATGTGTATGAAGAAGCATGGGCTATGGCCC
TTGGCCGTCGTCTGGCTGACGATTATCAAGTACCATGGGACGTATTAGAA
AGTATGGATTGTGATAACAAGGAAAAACTGTTGCGAAAGATAATGTCTCT
GCAGGAGGAGCTCGATGGTGAACGAACAGAGTCCCGGTTGACCGAAAACG
AAACGAAACCCATTATTCCTTTGAGGGCTCGCCTTCTTTTTGTGCACTGC
ATGCACGGTCTTGGAAACAGATTACGAGCCATTGGGAGTGCTTTGGCTTT
TGCCCGGAACACCAGAAGAGTTCCAGTTATTATTTGGGAAAGTGATGCTC
ATATAGCTGCAGAATTCGATGCCCTGTTCAACACATCCGATATTGTCCTT
TTGAATCGGTTCATTCCTAAATGGCCTTTCAAGGACTTGCACCAGTATGA
CAAGTCTTGGACTGAGTTCAAGTTCTACAATTATATGGAAATGGAAGATG
GTGCTAGCAAGGGTGAATTGATAAAAAACGATCCAAGTAAGCATTTGTAT
TACAAGGGGGCTTATGTATTGGAAGCTCCGGAATATTCTTGGTGGGAAGT
GGACAATGAAGAGCTTAGGAATCTCGAACCGGTCGAAATGGTACGGAATC
ATTTGAAAGACCTGGAGAGCCAAGATTTAAAAAACTCAATTGGGGTTCAC
ATACGGAACCGAACACTCGAAAAAGACATCAAAAACGTAAACTTCAACGA
AGAGTATGGATCGGAAGCAGCTTCTACCATGGAACATTGGCGCACCATGA
GCTCCTACAAGACTTTTATTGCAGAAATGGAACGGATTCTAGACGAAGAG
GATAATGACGTGAAATTTTACGTGGCCACCGATACGTTTAAGATTCTTGC
GATCATGAATGAAAAGTTCCCGGGGAAGATTCTTCGAACAGAACGGAATT
GTGATGACAGGGATTCTGAATGTGTAAAATATGCCGTCATTGACATGTAC
GCATTGAGTAGGACTAAGCGGCTGCTTGGTTCGAATTGGAGTAGCTACAC
CGAGATGGCAGAAAGGTTGGGAGGTCTAAAAGCTAGTTTGGCAGGTCAGG
ATTTCGGGGCTCCGTTGAACTCTAAAAAGATGGCAGTTCCAGAAGAAGTC
GAAAAAAGCAAATCAGAAGAAGAACTGGTAGCTGAAGAACAAGATAGATT
ACGAGACTCAGGACGAGAATAA
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protein sequence of Gchil3775.t1

>Gchil3775.t1 ID=Gchil3775.t1|Name=Gchil3775.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=524bp
MVMRRSAFWNVGGYDERIQTYGWDDEDLYTRLQASKMEKLNVSYDHVNHV
SHDDGKRAQRGVKFAQVQIDLNQLLLEKLPQWSSAFVNNNNSSKYETVSE
DSSGYHELEAIFVPNPLQKLVDSDVYEEAWAMALGRRLADDYQVPWDVLE
SMDCDNKEKLLRKIMSLQEELDGERTESRLTENETKPIIPLRARLLFVHC
MHGLGNRLRAIGSALAFARNTRRVPVIIWESDAHIAAEFDALFNTSDIVL
LNRFIPKWPFKDLHQYDKSWTEFKFYNYMEMEDGASKGELIKNDPSKHLY
YKGAYVLEAPEYSWWEVDNEELRNLEPVEMVRNHLKDLESQDLKNSIGVH
IRNRTLEKDIKNVNFNEEYGSEAASTMEHWRTMSSYKTFIAEMERILDEE
DNDVKFYVATDTFKILAIMNEKFPGKILRTERNCDDRDSECVKYAVIDMY
ALSRTKRLLGSNWSSYTEMAERLGGLKASLAGQDFGAPLNSKKMAVPEEV
EKSKSEEELVAEEQDRLRDSGRE*
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mRNA from alignment at tig00000010_pilon:298541..300112+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3775.t1 ID=Gchil3775.t1|Name=Gchil3775.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1572bp|location=Sequence derived from alignment at tig00000010_pilon:298541..300112+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTAATGAGAAGGAGTGCGTTTTGGAATGTCGGAGGCTATGACGAGCG
AATCCAAACATATGGATGGGATGATGAAGACTTATACACCCGTTTGCAGG
CTAGCAAGATGGAAAAACTTAACGTCAGCTACGATCACGTGAACCATGTG
TCGCATGATGATGGTAAGAGAGCACAACGAGGGGTCAAGTTTGCTCAAGT
GCAAATAGACCTAAACCAGCTCCTGCTGGAAAAGCTACCACAGTGGTCTT
CTGCCTTTGTCAATAATAATAATTCTTCGAAGTACGAGACCGTATCGGAG
GATAGCTCAGGATACCATGAACTGGAAGCCATCTTTGTTCCCAACCCTTT
ACAAAAACTTGTCGATTCTGATGTGTATGAAGAAGCATGGGCTATGGCCC
TTGGCCGTCGTCTGGCTGACGATTATCAAGTACCATGGGACGTATTAGAA
AGTATGGATTGTGATAACAAGGAAAAACTGTTGCGAAAGATAATGTCTCT
GCAGGAGGAGCTCGATGGTGAACGAACAGAGTCCCGGTTGACCGAAAACG
AAACGAAACCCATTATTCCTTTGAGGGCTCGCCTTCTTTTTGTGCACTGC
ATGCACGGTCTTGGAAACAGATTACGAGCCATTGGGAGTGCTTTGGCTTT
TGCCCGGAACACCAGAAGAGTTCCAGTTATTATTTGGGAAAGTGATGCTC
ATATAGCTGCAGAATTCGATGCCCTGTTCAACACATCCGATATTGTCCTT
TTGAATCGGTTCATTCCTAAATGGCCTTTCAAGGACTTGCACCAGTATGA
CAAGTCTTGGACTGAGTTCAAGTTCTACAATTATATGGAAATGGAAGATG
GTGCTAGCAAGGGTGAATTGATAAAAAACGATCCAAGTAAGCATTTGTAT
TACAAGGGGGCTTATGTATTGGAAGCTCCGGAATATTCTTGGTGGGAAGT
GGACAATGAAGAGCTTAGGAATCTCGAACCGGTCGAAATGGTACGGAATC
ATTTGAAAGACCTGGAGAGCCAAGATTTAAAAAACTCAATTGGGGTTCAC
ATACGGAACCGAACACTCGAAAAAGACATCAAAAACGTAAACTTCAACGA
AGAGTATGGATCGGAAGCAGCTTCTACCATGGAACATTGGCGCACCATGA
GCTCCTACAAGACTTTTATTGCAGAAATGGAACGGATTCTAGACGAAGAG
GATAATGACGTGAAATTTTACGTGGCCACCGATACGTTTAAGATTCTTGC
GATCATGAATGAAAAGTTCCCGGGGAAGATTCTTCGAACAGAACGGAATT
GTGATGACAGGGATTCTGAATGTGTAAAATATGCCGTCATTGACATGTAC
GCATTGAGTAGGACTAAGCGGCTGCTTGGTTCGAATTGGAGTAGCTACAC
CGAGATGGCAGAAAGGTTGGGAGGTCTAAAAGCTAGTTTGGCAGGTCAGG
ATTTCGGGGCTCCGTTGAACTCTAAAAAGATGGCAGTTCCAGAAGAAGTC
GAAAAAAGCAAATCAGAAGAAGAACTGGTAGCTGAAGAACAAGATAGATT
ACGAGACTCAGGACGAGAATAA
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Coding sequence (CDS) from alignment at tig00000010_pilon:298541..300112+

>Gchil3775.t1 ID=Gchil3775.t1|Name=Gchil3775.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1572bp|location=Sequence derived from alignment at tig00000010_pilon:298541..300112+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTAATGAGAAGGAGTGCGTTTTGGAATGTCGGAGGCTATGACGAGCG
AATCCAAACATATGGATGGGATGATGAAGACTTATACACCCGTTTGCAGG
CTAGCAAGATGGAAAAACTTAACGTCAGCTACGATCACGTGAACCATGTG
TCGCATGATGATGGTAAGAGAGCACAACGAGGGGTCAAGTTTGCTCAAGT
GCAAATAGACCTAAACCAGCTCCTGCTGGAAAAGCTACCACAGTGGTCTT
CTGCCTTTGTCAATAATAATAATTCTTCGAAGTACGAGACCGTATCGGAG
GATAGCTCAGGATACCATGAACTGGAAGCCATCTTTGTTCCCAACCCTTT
ACAAAAACTTGTCGATTCTGATGTGTATGAAGAAGCATGGGCTATGGCCC
TTGGCCGTCGTCTGGCTGACGATTATCAAGTACCATGGGACGTATTAGAA
AGTATGGATTGTGATAACAAGGAAAAACTGTTGCGAAAGATAATGTCTCT
GCAGGAGGAGCTCGATGGTGAACGAACAGAGTCCCGGTTGACCGAAAACG
AAACGAAACCCATTATTCCTTTGAGGGCTCGCCTTCTTTTTGTGCACTGC
ATGCACGGTCTTGGAAACAGATTACGAGCCATTGGGAGTGCTTTGGCTTT
TGCCCGGAACACCAGAAGAGTTCCAGTTATTATTTGGGAAAGTGATGCTC
ATATAGCTGCAGAATTCGATGCCCTGTTCAACACATCCGATATTGTCCTT
TTGAATCGGTTCATTCCTAAATGGCCTTTCAAGGACTTGCACCAGTATGA
CAAGTCTTGGACTGAGTTCAAGTTCTACAATTATATGGAAATGGAAGATG
GTGCTAGCAAGGGTGAATTGATAAAAAACGATCCAAGTAAGCATTTGTAT
TACAAGGGGGCTTATGTATTGGAAGCTCCGGAATATTCTTGGTGGGAAGT
GGACAATGAAGAGCTTAGGAATCTCGAACCGGTCGAAATGGTACGGAATC
ATTTGAAAGACCTGGAGAGCCAAGATTTAAAAAACTCAATTGGGGTTCAC
ATACGGAACCGAACACTCGAAAAAGACATCAAAAACGTAAACTTCAACGA
AGAGTATGGATCGGAAGCAGCTTCTACCATGGAACATTGGCGCACCATGA
GCTCCTACAAGACTTTTATTGCAGAAATGGAACGGATTCTAGACGAAGAG
GATAATGACGTGAAATTTTACGTGGCCACCGATACGTTTAAGATTCTTGC
GATCATGAATGAAAAGTTCCCGGGGAAGATTCTTCGAACAGAACGGAATT
GTGATGACAGGGATTCTGAATGTGTAAAATATGCCGTCATTGACATGTAC
GCATTGAGTAGGACTAAGCGGCTGCTTGGTTCGAATTGGAGTAGCTACAC
CGAGATGGCAGAAAGGTTGGGAGGTCTAAAAGCTAGTTTGGCAGGTCAGG
ATTTCGGGGCTCCGTTGAACTCTAAAAAGATGGCAGTTCCAGAAGAAGTC
GAAAAAAGCAAATCAGAAGAAGAACTGGTAGCTGAAGAACAAGATAGATT
ACGAGACTCAGGACGAGAATAA
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