Gchil3773.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3773.t1
Unique NameGchil3773.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length513
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:256097..257635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1142394.PSMK_16100
PFAMsGATase1_like,VWA,VWA_3
Max annot lvl203682|Planctomycetes
Evalue5.73e-06
EggNOG OGsCOG2304@1|root,COG5426@1|root,COG2304@2|Bacteria,COG5426@2|Bacteria,2IXKI@203682|Planctomycetes
Descriptionvon Willebrand factor, type A
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3773Gchil3773Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 256097..257635 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3773.t1.start1Gchil3773.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 256097..256099 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3773.t1.CDS1Gchil3773.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 256097..257635 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3773.t1.exon1Gchil3773.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 256097..257635 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3773.t1.stop1Gchil3773.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 257633..257635 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3773.t1Gchil3773.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 256097..257635 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3773.t1 ID=Gchil3773.t1|Name=Gchil3773.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=513bp
METVDTCPVDGVCFALDQSGSISLNYPDLQEFVIAVSREIESNSPSTLFS
AFGFANDVSVIQSSTSELESQFVPAINAPVTPSGTTNMYAGLNACFTELT
ELTGIKVIVLLTDGVDNGSPFAIELAPTIKEQGIAIITVGIGSGVSSLYL
QQLATSPDFFVASTFTTLPIEVFGLTQMLCELPMVSPFPTETAEVTPTVE
VSPTLEVTETVEVTPTVEVSPTPEVTETVEVTQTPEVSATPEVTETVEVT
QTPEVSATPEVTETVEVTPTVEVSPTPEVTETVEVTPTVEVSPTPEVTET
VEVTATPEVSATPEVTETVEVTQTPEVSATPEVTETVEVTPTPEVTVTPV
VTETPTVTTIVDACEMAFQACDFTFADTQTVPTLLLPSVPDQPFTSRIVS
RNQNINIGVVNTNGIVPEFIEPDGSVVPITDETEASQPFSPTQFKPFSTP
DDNGSAIGHETFQGNQAFVIPDRCVRVFITSFQILSTQEPFFVVGNVDAT
IDDNACVVFRTG*
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spliced messenger RNA

>Gchil3773.t1 ID=Gchil3773.t1|Name=Gchil3773.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1539bp|location=Sequence derived from alignment at tig00000010_pilon:256097..257635+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAACCGTAGATACTTGTCCAGTGGACGGTGTTTGTTTTGCTTTGGA
CCAAAGTGGATCGATCTCCTTAAACTATCCGGACTTACAGGAGTTTGTGA
TAGCCGTCTCTCGCGAAATTGAGTCTAATTCGCCATCTACTCTCTTCTCT
GCATTTGGGTTTGCGAATGATGTCAGTGTGATTCAGTCTTCTACTTCAGA
ACTAGAATCACAATTCGTACCTGCCATTAATGCCCCCGTGACGCCTTCAG
GGACTACTAACATGTACGCGGGGTTGAATGCATGCTTTACTGAACTCACG
GAGCTAACTGGTATCAAGGTCATTGTGCTCTTGACGGACGGCGTAGACAA
CGGTTCTCCTTTTGCAATCGAACTCGCCCCTACCATCAAGGAGCAAGGAA
TCGCAATTATTACTGTTGGCATTGGAAGTGGAGTATCTAGTCTATACCTC
CAACAGCTTGCAACGAGTCCTGACTTTTTCGTTGCCTCAACATTCACCAC
ATTACCCATCGAAGTGTTTGGTCTTACTCAGATGCTGTGCGAACTCCCTA
TGGTTTCGCCTTTCCCGACCGAGACGGCGGAAGTGACCCCAACAGTGGAA
GTTAGCCCAACCCTAGAGGTGACCGAGACGGTGGAAGTGACCCCAACTGT
GGAAGTTAGCCCAACCCCAGAGGTGACCGAGACAGTGGAAGTGACCCAAA
CTCCGGAAGTAAGCGCAACTCCAGAGGTGACCGAGACAGTGGAAGTGACC
CAAACTCCGGAAGTAAGCGCAACTCCAGAGGTGACCGAGACGGTGGAAGT
GACCCCAACTGTGGAAGTTAGCCCAACCCCAGAGGTGACCGAGACGGTGG
AAGTGACCCCAACTGTGGAAGTTAGCCCAACCCCAGAGGTGACCGAGACG
GTGGAGGTGACCGCAACTCCAGAAGTAAGCGCAACTCCAGAGGTGACTGA
GACGGTGGAAGTGACCCAAACTCCGGAAGTAAGCGCAACTCCAGAGGTGA
CGGAGACGGTGGAAGTGACCCCAACTCCGGAAGTTACTGTTACACCCGTC
GTAACTGAAACGCCAACCGTAACAACAATCGTTGACGCGTGCGAAATGGC
CTTCCAGGCTTGTGATTTCACATTTGCAGACACACAAACAGTGCCAACGC
TCTTGCTCCCATCTGTTCCTGATCAGCCATTCACGTCAAGAATCGTATCA
AGGAATCAAAACATCAACATCGGCGTCGTGAATACTAATGGCATTGTGCC
AGAATTCATTGAACCTGACGGCAGCGTTGTGCCAATCACGGACGAGACAG
AGGCCTCCCAGCCGTTTTCTCCAACGCAGTTCAAACCATTCTCTACCCCT
GATGACAATGGCTCGGCTATTGGCCACGAGACCTTCCAGGGCAATCAAGC
ATTTGTAATCCCTGACCGATGTGTGCGTGTGTTTATCACTTCCTTCCAAA
TTCTTTCAACTCAGGAACCGTTCTTTGTGGTGGGTAACGTGGATGCCACC
ATCGATGATAATGCATGTGTTGTCTTCAGAACTGGGTAG
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protein sequence of Gchil3773.t1

>Gchil3773.t1 ID=Gchil3773.t1|Name=Gchil3773.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=513bp
METVDTCPVDGVCFALDQSGSISLNYPDLQEFVIAVSREIESNSPSTLFS
AFGFANDVSVIQSSTSELESQFVPAINAPVTPSGTTNMYAGLNACFTELT
ELTGIKVIVLLTDGVDNGSPFAIELAPTIKEQGIAIITVGIGSGVSSLYL
QQLATSPDFFVASTFTTLPIEVFGLTQMLCELPMVSPFPTETAEVTPTVE
VSPTLEVTETVEVTPTVEVSPTPEVTETVEVTQTPEVSATPEVTETVEVT
QTPEVSATPEVTETVEVTPTVEVSPTPEVTETVEVTPTVEVSPTPEVTET
VEVTATPEVSATPEVTETVEVTQTPEVSATPEVTETVEVTPTPEVTVTPV
VTETPTVTTIVDACEMAFQACDFTFADTQTVPTLLLPSVPDQPFTSRIVS
RNQNINIGVVNTNGIVPEFIEPDGSVVPITDETEASQPFSPTQFKPFSTP
DDNGSAIGHETFQGNQAFVIPDRCVRVFITSFQILSTQEPFFVVGNVDAT
IDDNACVVFRTG*
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mRNA from alignment at tig00000010_pilon:256097..257635+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3773.t1 ID=Gchil3773.t1|Name=Gchil3773.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1539bp|location=Sequence derived from alignment at tig00000010_pilon:256097..257635+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAAACCGTAGATACTTGTCCAGTGGACGGTGTTTGTTTTGCTTTGGA
CCAAAGTGGATCGATCTCCTTAAACTATCCGGACTTACAGGAGTTTGTGA
TAGCCGTCTCTCGCGAAATTGAGTCTAATTCGCCATCTACTCTCTTCTCT
GCATTTGGGTTTGCGAATGATGTCAGTGTGATTCAGTCTTCTACTTCAGA
ACTAGAATCACAATTCGTACCTGCCATTAATGCCCCCGTGACGCCTTCAG
GGACTACTAACATGTACGCGGGGTTGAATGCATGCTTTACTGAACTCACG
GAGCTAACTGGTATCAAGGTCATTGTGCTCTTGACGGACGGCGTAGACAA
CGGTTCTCCTTTTGCAATCGAACTCGCCCCTACCATCAAGGAGCAAGGAA
TCGCAATTATTACTGTTGGCATTGGAAGTGGAGTATCTAGTCTATACCTC
CAACAGCTTGCAACGAGTCCTGACTTTTTCGTTGCCTCAACATTCACCAC
ATTACCCATCGAAGTGTTTGGTCTTACTCAGATGCTGTGCGAACTCCCTA
TGGTTTCGCCTTTCCCGACCGAGACGGCGGAAGTGACCCCAACAGTGGAA
GTTAGCCCAACCCTAGAGGTGACCGAGACGGTGGAAGTGACCCCAACTGT
GGAAGTTAGCCCAACCCCAGAGGTGACCGAGACAGTGGAAGTGACCCAAA
CTCCGGAAGTAAGCGCAACTCCAGAGGTGACCGAGACAGTGGAAGTGACC
CAAACTCCGGAAGTAAGCGCAACTCCAGAGGTGACCGAGACGGTGGAAGT
GACCCCAACTGTGGAAGTTAGCCCAACCCCAGAGGTGACCGAGACGGTGG
AAGTGACCCCAACTGTGGAAGTTAGCCCAACCCCAGAGGTGACCGAGACG
GTGGAGGTGACCGCAACTCCAGAAGTAAGCGCAACTCCAGAGGTGACTGA
GACGGTGGAAGTGACCCAAACTCCGGAAGTAAGCGCAACTCCAGAGGTGA
CGGAGACGGTGGAAGTGACCCCAACTCCGGAAGTTACTGTTACACCCGTC
GTAACTGAAACGCCAACCGTAACAACAATCGTTGACGCGTGCGAAATGGC
CTTCCAGGCTTGTGATTTCACATTTGCAGACACACAAACAGTGCCAACGC
TCTTGCTCCCATCTGTTCCTGATCAGCCATTCACGTCAAGAATCGTATCA
AGGAATCAAAACATCAACATCGGCGTCGTGAATACTAATGGCATTGTGCC
AGAATTCATTGAACCTGACGGCAGCGTTGTGCCAATCACGGACGAGACAG
AGGCCTCCCAGCCGTTTTCTCCAACGCAGTTCAAACCATTCTCTACCCCT
GATGACAATGGCTCGGCTATTGGCCACGAGACCTTCCAGGGCAATCAAGC
ATTTGTAATCCCTGACCGATGTGTGCGTGTGTTTATCACTTCCTTCCAAA
TTCTTTCAACTCAGGAACCGTTCTTTGTGGTGGGTAACGTGGATGCCACC
ATCGATGATAATGCATGTGTTGTCTTCAGAACTGGGTAG
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Coding sequence (CDS) from alignment at tig00000010_pilon:256097..257635+

>Gchil3773.t1 ID=Gchil3773.t1|Name=Gchil3773.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1539bp|location=Sequence derived from alignment at tig00000010_pilon:256097..257635+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAAACCGTAGATACTTGTCCAGTGGACGGTGTTTGTTTTGCTTTGGA
CCAAAGTGGATCGATCTCCTTAAACTATCCGGACTTACAGGAGTTTGTGA
TAGCCGTCTCTCGCGAAATTGAGTCTAATTCGCCATCTACTCTCTTCTCT
GCATTTGGGTTTGCGAATGATGTCAGTGTGATTCAGTCTTCTACTTCAGA
ACTAGAATCACAATTCGTACCTGCCATTAATGCCCCCGTGACGCCTTCAG
GGACTACTAACATGTACGCGGGGTTGAATGCATGCTTTACTGAACTCACG
GAGCTAACTGGTATCAAGGTCATTGTGCTCTTGACGGACGGCGTAGACAA
CGGTTCTCCTTTTGCAATCGAACTCGCCCCTACCATCAAGGAGCAAGGAA
TCGCAATTATTACTGTTGGCATTGGAAGTGGAGTATCTAGTCTATACCTC
CAACAGCTTGCAACGAGTCCTGACTTTTTCGTTGCCTCAACATTCACCAC
ATTACCCATCGAAGTGTTTGGTCTTACTCAGATGCTGTGCGAACTCCCTA
TGGTTTCGCCTTTCCCGACCGAGACGGCGGAAGTGACCCCAACAGTGGAA
GTTAGCCCAACCCTAGAGGTGACCGAGACGGTGGAAGTGACCCCAACTGT
GGAAGTTAGCCCAACCCCAGAGGTGACCGAGACAGTGGAAGTGACCCAAA
CTCCGGAAGTAAGCGCAACTCCAGAGGTGACCGAGACAGTGGAAGTGACC
CAAACTCCGGAAGTAAGCGCAACTCCAGAGGTGACCGAGACGGTGGAAGT
GACCCCAACTGTGGAAGTTAGCCCAACCCCAGAGGTGACCGAGACGGTGG
AAGTGACCCCAACTGTGGAAGTTAGCCCAACCCCAGAGGTGACCGAGACG
GTGGAGGTGACCGCAACTCCAGAAGTAAGCGCAACTCCAGAGGTGACTGA
GACGGTGGAAGTGACCCAAACTCCGGAAGTAAGCGCAACTCCAGAGGTGA
CGGAGACGGTGGAAGTGACCCCAACTCCGGAAGTTACTGTTACACCCGTC
GTAACTGAAACGCCAACCGTAACAACAATCGTTGACGCGTGCGAAATGGC
CTTCCAGGCTTGTGATTTCACATTTGCAGACACACAAACAGTGCCAACGC
TCTTGCTCCCATCTGTTCCTGATCAGCCATTCACGTCAAGAATCGTATCA
AGGAATCAAAACATCAACATCGGCGTCGTGAATACTAATGGCATTGTGCC
AGAATTCATTGAACCTGACGGCAGCGTTGTGCCAATCACGGACGAGACAG
AGGCCTCCCAGCCGTTTTCTCCAACGCAGTTCAAACCATTCTCTACCCCT
GATGACAATGGCTCGGCTATTGGCCACGAGACCTTCCAGGGCAATCAAGC
ATTTGTAATCCCTGACCGATGTGTGCGTGTGTTTATCACTTCCTTCCAAA
TTCTTTCAACTCAGGAACCGTTCTTTGTGGTGGGTAACGTGGATGCCACC
ATCGATGATAATGCATGTGTTGTCTTCAGAACTGGGTAG
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