Gchil3770.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3770.t1
Unique NameGchil3770.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length740
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:219600..221819 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ21093
PFAMsCBF,NOC3p
Max annot lvl35493|Streptophyta
KEGG koko:K14834
Evalue1.13e-32
EggNOG OGsCOG5117@1|root,KOG2153@2759|Eukaryota,37J9B@33090|Viridiplantae,3GDPR@35493|Streptophyta
DescriptionNucleolar complex protein 3 homolog
COG categoryJU
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3770Gchil3770Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 219600..221819 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3770.t1.stop1Gchil3770.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 219600..219602 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3770.t1.CDS1Gchil3770.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 219600..221819 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3770.t1.exon1Gchil3770.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 219600..221819 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3770.t1.start1Gchil3770.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 221817..221819 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3770.t1Gchil3770.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 219600..221819 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3770.t1 ID=Gchil3770.t1|Name=Gchil3770.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=740bp
MVSERRKKNKKELTVAPSWEVPRTFTSQERQTLPLPVVQANGIVKKAQLD
RPKFVAKAKTKKEKKVVFEHALEDVEEVRKPEGGENADPGRKRARKRPRH
SLEKYVQQMEKLESIKVNIASIAAKITANPEKNVSLLRELRSIARDSKGK
IAALVLLTESQVYKDVIPGYRIRRITEKEAETKVSKETKHLRNYEESLLL
NYQRFVKSCINLSNWKFSGARHTPASRNMTVVRFASCKALSELLRSASHF
NEAEIIAAAVCGHVCSSEADIRKLSSKALSSVLQNAHRASGNTLELCVSI
AKNLAKVAGKKKRSAPAELVAPLTEIQFAHFARLPTTSKSKKESKGSKRL
SKFKRKRMMKMEKHAVDDKEVEKDMREGDAEATPQELFNAKKSLLNSVCH
AYFNIIRSASSDADSIEETENNKPKPKKRKPPAALSPALKGLLRISTFIS
ADIIDAILGALTPLLESGQLPLSSRFRCLSAAYAVLGIHARSQKLSADSF
TGDTRALDTALYISIGALYTSEMPLREDESITFDAIEAVVASTSFRDMPV
ARCAALARRLAIVATNAPVHSCTIALLYAAQTLMPSSIVSPLFRQLNENN
ELSIIDDVGLVQKFNMDTDDPDISMAGRSAAWELVCLASSFHPKVQEIAK
QCAAGICGSRLAKSATSIVFKAKAFSNSEGGFNPTPQSVLLSVRKQSRSE
SKPFFISEDETRDVDEMFENDRMRMEEFFSAQWHNRGPK*
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spliced messenger RNA

>Gchil3770.t1 ID=Gchil3770.t1|Name=Gchil3770.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2220bp|location=Sequence derived from alignment at tig00000010_pilon:219600..221819- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAAGCGAAAGACGCAAGAAGAACAAGAAAGAGCTCACAGTGGCACC
CTCATGGGAAGTGCCCAGGACGTTTACGAGTCAGGAACGCCAGACTCTTC
CACTCCCCGTCGTTCAGGCAAACGGAATAGTCAAGAAGGCCCAATTAGAT
CGCCCAAAGTTCGTTGCCAAGGCAAAGACAAAGAAAGAGAAGAAAGTAGT
GTTTGAACACGCCTTGGAGGACGTCGAAGAAGTCAGAAAACCAGAAGGCG
GCGAGAACGCAGACCCGGGCAGAAAGCGAGCTCGAAAGCGTCCTCGCCAC
TCCCTCGAGAAGTATGTGCAGCAGATGGAGAAATTGGAGTCGATCAAAGT
CAACATTGCTTCCATAGCTGCCAAGATCACTGCTAACCCAGAGAAAAACG
TATCGCTGTTGCGAGAGCTTCGTTCTATCGCGCGTGACTCTAAAGGAAAG
ATAGCTGCGCTCGTTTTGCTTACTGAGTCGCAGGTTTATAAGGACGTAAT
TCCAGGTTACAGAATACGTCGCATAACGGAGAAAGAAGCGGAAACAAAAG
TGTCTAAGGAGACGAAACATTTGCGAAACTATGAAGAATCTCTTCTTCTG
AACTATCAAAGATTCGTAAAGTCATGCATCAATCTCTCCAATTGGAAATT
CTCGGGAGCCCGACACACCCCCGCAAGTCGAAACATGACTGTGGTTCGCT
TCGCATCATGCAAAGCGCTTTCAGAGCTTCTCCGTTCCGCATCACACTTT
AACGAAGCAGAAATTATCGCGGCTGCAGTTTGTGGTCATGTGTGCAGCTC
AGAGGCTGACATACGAAAACTGTCATCCAAGGCGCTTTCTTCTGTTTTGC
AGAATGCTCACCGAGCATCTGGAAACACTCTTGAATTATGTGTTTCGATC
GCAAAGAATCTTGCAAAAGTTGCAGGAAAGAAAAAGCGATCAGCGCCGGC
AGAGCTTGTAGCTCCACTCACAGAAATCCAGTTTGCTCATTTCGCTCGCC
TTCCAACCACGAGCAAATCGAAGAAAGAGTCCAAGGGCTCAAAGCGGCTG
AGCAAATTTAAACGAAAACGCATGATGAAAATGGAGAAACATGCAGTCGA
TGACAAGGAAGTCGAGAAAGACATGCGCGAAGGGGATGCAGAAGCCACGC
CACAAGAACTTTTCAATGCGAAGAAGAGTTTGTTGAATTCAGTGTGCCAT
GCATACTTTAACATTATCCGCTCGGCTTCGAGTGACGCCGATTCCATAGA
AGAAACGGAGAACAATAAGCCCAAGCCCAAGAAAAGGAAACCGCCTGCAG
CACTTTCGCCAGCGTTAAAGGGGTTGTTGAGAATATCTACTTTTATTAGC
GCTGATATAATTGATGCAATTCTTGGGGCTTTAACGCCACTGCTTGAAAG
CGGGCAATTACCGTTAAGCAGTCGATTTCGTTGCCTGTCAGCGGCATACG
CTGTTCTAGGTATACATGCTCGATCGCAGAAGCTTAGTGCCGATTCTTTC
ACTGGAGATACAAGAGCACTTGATACGGCCCTTTACATCTCTATAGGAGC
GCTTTACACATCGGAAATGCCTCTAAGAGAAGACGAATCAATCACATTTG
ACGCGATTGAAGCTGTCGTGGCATCAACGAGTTTCCGTGACATGCCAGTG
GCAAGATGTGCGGCGCTAGCAAGAAGACTGGCCATCGTAGCAACAAATGC
CCCCGTTCATTCGTGCACCATTGCGCTGCTGTATGCGGCTCAGACATTGA
TGCCTTCATCAATTGTTTCTCCACTATTCCGTCAGCTGAATGAAAATAAC
GAGCTGAGCATAATTGATGACGTAGGTTTGGTTCAGAAATTCAACATGGA
CACTGATGACCCCGATATCTCTATGGCAGGCAGAAGTGCGGCTTGGGAAT
TAGTTTGTTTGGCGAGCTCGTTCCATCCGAAGGTTCAAGAGATTGCGAAA
CAATGTGCTGCCGGGATCTGTGGCTCTAGGCTTGCGAAGAGTGCAACGAG
CATTGTGTTCAAGGCGAAAGCGTTCTCAAATTCGGAAGGCGGCTTTAATC
CTACACCACAGTCTGTTTTGTTATCTGTTCGAAAACAGAGTCGCTCGGAA
TCGAAGCCGTTTTTTATTTCGGAAGATGAAACGCGAGATGTGGATGAAAT
GTTCGAAAACGACCGGATGAGGATGGAGGAATTTTTCTCGGCTCAATGGC
ACAACAGGGGGCCGAAGTAA
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protein sequence of Gchil3770.t1

>Gchil3770.t1 ID=Gchil3770.t1|Name=Gchil3770.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=740bp
MVSERRKKNKKELTVAPSWEVPRTFTSQERQTLPLPVVQANGIVKKAQLD
RPKFVAKAKTKKEKKVVFEHALEDVEEVRKPEGGENADPGRKRARKRPRH
SLEKYVQQMEKLESIKVNIASIAAKITANPEKNVSLLRELRSIARDSKGK
IAALVLLTESQVYKDVIPGYRIRRITEKEAETKVSKETKHLRNYEESLLL
NYQRFVKSCINLSNWKFSGARHTPASRNMTVVRFASCKALSELLRSASHF
NEAEIIAAAVCGHVCSSEADIRKLSSKALSSVLQNAHRASGNTLELCVSI
AKNLAKVAGKKKRSAPAELVAPLTEIQFAHFARLPTTSKSKKESKGSKRL
SKFKRKRMMKMEKHAVDDKEVEKDMREGDAEATPQELFNAKKSLLNSVCH
AYFNIIRSASSDADSIEETENNKPKPKKRKPPAALSPALKGLLRISTFIS
ADIIDAILGALTPLLESGQLPLSSRFRCLSAAYAVLGIHARSQKLSADSF
TGDTRALDTALYISIGALYTSEMPLREDESITFDAIEAVVASTSFRDMPV
ARCAALARRLAIVATNAPVHSCTIALLYAAQTLMPSSIVSPLFRQLNENN
ELSIIDDVGLVQKFNMDTDDPDISMAGRSAAWELVCLASSFHPKVQEIAK
QCAAGICGSRLAKSATSIVFKAKAFSNSEGGFNPTPQSVLLSVRKQSRSE
SKPFFISEDETRDVDEMFENDRMRMEEFFSAQWHNRGPK*
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mRNA from alignment at tig00000010_pilon:219600..221819-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3770.t1 ID=Gchil3770.t1|Name=Gchil3770.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2220bp|location=Sequence derived from alignment at tig00000010_pilon:219600..221819- (Gracilaria chilensis NLEC103_M9 male)
ATGGTAAGCGAAAGACGCAAGAAGAACAAGAAAGAGCTCACAGTGGCACC
CTCATGGGAAGTGCCCAGGACGTTTACGAGTCAGGAACGCCAGACTCTTC
CACTCCCCGTCGTTCAGGCAAACGGAATAGTCAAGAAGGCCCAATTAGAT
CGCCCAAAGTTCGTTGCCAAGGCAAAGACAAAGAAAGAGAAGAAAGTAGT
GTTTGAACACGCCTTGGAGGACGTCGAAGAAGTCAGAAAACCAGAAGGCG
GCGAGAACGCAGACCCGGGCAGAAAGCGAGCTCGAAAGCGTCCTCGCCAC
TCCCTCGAGAAGTATGTGCAGCAGATGGAGAAATTGGAGTCGATCAAAGT
CAACATTGCTTCCATAGCTGCCAAGATCACTGCTAACCCAGAGAAAAACG
TATCGCTGTTGCGAGAGCTTCGTTCTATCGCGCGTGACTCTAAAGGAAAG
ATAGCTGCGCTCGTTTTGCTTACTGAGTCGCAGGTTTATAAGGACGTAAT
TCCAGGTTACAGAATACGTCGCATAACGGAGAAAGAAGCGGAAACAAAAG
TGTCTAAGGAGACGAAACATTTGCGAAACTATGAAGAATCTCTTCTTCTG
AACTATCAAAGATTCGTAAAGTCATGCATCAATCTCTCCAATTGGAAATT
CTCGGGAGCCCGACACACCCCCGCAAGTCGAAACATGACTGTGGTTCGCT
TCGCATCATGCAAAGCGCTTTCAGAGCTTCTCCGTTCCGCATCACACTTT
AACGAAGCAGAAATTATCGCGGCTGCAGTTTGTGGTCATGTGTGCAGCTC
AGAGGCTGACATACGAAAACTGTCATCCAAGGCGCTTTCTTCTGTTTTGC
AGAATGCTCACCGAGCATCTGGAAACACTCTTGAATTATGTGTTTCGATC
GCAAAGAATCTTGCAAAAGTTGCAGGAAAGAAAAAGCGATCAGCGCCGGC
AGAGCTTGTAGCTCCACTCACAGAAATCCAGTTTGCTCATTTCGCTCGCC
TTCCAACCACGAGCAAATCGAAGAAAGAGTCCAAGGGCTCAAAGCGGCTG
AGCAAATTTAAACGAAAACGCATGATGAAAATGGAGAAACATGCAGTCGA
TGACAAGGAAGTCGAGAAAGACATGCGCGAAGGGGATGCAGAAGCCACGC
CACAAGAACTTTTCAATGCGAAGAAGAGTTTGTTGAATTCAGTGTGCCAT
GCATACTTTAACATTATCCGCTCGGCTTCGAGTGACGCCGATTCCATAGA
AGAAACGGAGAACAATAAGCCCAAGCCCAAGAAAAGGAAACCGCCTGCAG
CACTTTCGCCAGCGTTAAAGGGGTTGTTGAGAATATCTACTTTTATTAGC
GCTGATATAATTGATGCAATTCTTGGGGCTTTAACGCCACTGCTTGAAAG
CGGGCAATTACCGTTAAGCAGTCGATTTCGTTGCCTGTCAGCGGCATACG
CTGTTCTAGGTATACATGCTCGATCGCAGAAGCTTAGTGCCGATTCTTTC
ACTGGAGATACAAGAGCACTTGATACGGCCCTTTACATCTCTATAGGAGC
GCTTTACACATCGGAAATGCCTCTAAGAGAAGACGAATCAATCACATTTG
ACGCGATTGAAGCTGTCGTGGCATCAACGAGTTTCCGTGACATGCCAGTG
GCAAGATGTGCGGCGCTAGCAAGAAGACTGGCCATCGTAGCAACAAATGC
CCCCGTTCATTCGTGCACCATTGCGCTGCTGTATGCGGCTCAGACATTGA
TGCCTTCATCAATTGTTTCTCCACTATTCCGTCAGCTGAATGAAAATAAC
GAGCTGAGCATAATTGATGACGTAGGTTTGGTTCAGAAATTCAACATGGA
CACTGATGACCCCGATATCTCTATGGCAGGCAGAAGTGCGGCTTGGGAAT
TAGTTTGTTTGGCGAGCTCGTTCCATCCGAAGGTTCAAGAGATTGCGAAA
CAATGTGCTGCCGGGATCTGTGGCTCTAGGCTTGCGAAGAGTGCAACGAG
CATTGTGTTCAAGGCGAAAGCGTTCTCAAATTCGGAAGGCGGCTTTAATC
CTACACCACAGTCTGTTTTGTTATCTGTTCGAAAACAGAGTCGCTCGGAA
TCGAAGCCGTTTTTTATTTCGGAAGATGAAACGCGAGATGTGGATGAAAT
GTTCGAAAACGACCGGATGAGGATGGAGGAATTTTTCTCGGCTCAATGGC
ACAACAGGGGGCCGAAGTAA
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Coding sequence (CDS) from alignment at tig00000010_pilon:219600..221819-

>Gchil3770.t1 ID=Gchil3770.t1|Name=Gchil3770.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2220bp|location=Sequence derived from alignment at tig00000010_pilon:219600..221819- (Gracilaria chilensis NLEC103_M9 male)
ATGGTAAGCGAAAGACGCAAGAAGAACAAGAAAGAGCTCACAGTGGCACC
CTCATGGGAAGTGCCCAGGACGTTTACGAGTCAGGAACGCCAGACTCTTC
CACTCCCCGTCGTTCAGGCAAACGGAATAGTCAAGAAGGCCCAATTAGAT
CGCCCAAAGTTCGTTGCCAAGGCAAAGACAAAGAAAGAGAAGAAAGTAGT
GTTTGAACACGCCTTGGAGGACGTCGAAGAAGTCAGAAAACCAGAAGGCG
GCGAGAACGCAGACCCGGGCAGAAAGCGAGCTCGAAAGCGTCCTCGCCAC
TCCCTCGAGAAGTATGTGCAGCAGATGGAGAAATTGGAGTCGATCAAAGT
CAACATTGCTTCCATAGCTGCCAAGATCACTGCTAACCCAGAGAAAAACG
TATCGCTGTTGCGAGAGCTTCGTTCTATCGCGCGTGACTCTAAAGGAAAG
ATAGCTGCGCTCGTTTTGCTTACTGAGTCGCAGGTTTATAAGGACGTAAT
TCCAGGTTACAGAATACGTCGCATAACGGAGAAAGAAGCGGAAACAAAAG
TGTCTAAGGAGACGAAACATTTGCGAAACTATGAAGAATCTCTTCTTCTG
AACTATCAAAGATTCGTAAAGTCATGCATCAATCTCTCCAATTGGAAATT
CTCGGGAGCCCGACACACCCCCGCAAGTCGAAACATGACTGTGGTTCGCT
TCGCATCATGCAAAGCGCTTTCAGAGCTTCTCCGTTCCGCATCACACTTT
AACGAAGCAGAAATTATCGCGGCTGCAGTTTGTGGTCATGTGTGCAGCTC
AGAGGCTGACATACGAAAACTGTCATCCAAGGCGCTTTCTTCTGTTTTGC
AGAATGCTCACCGAGCATCTGGAAACACTCTTGAATTATGTGTTTCGATC
GCAAAGAATCTTGCAAAAGTTGCAGGAAAGAAAAAGCGATCAGCGCCGGC
AGAGCTTGTAGCTCCACTCACAGAAATCCAGTTTGCTCATTTCGCTCGCC
TTCCAACCACGAGCAAATCGAAGAAAGAGTCCAAGGGCTCAAAGCGGCTG
AGCAAATTTAAACGAAAACGCATGATGAAAATGGAGAAACATGCAGTCGA
TGACAAGGAAGTCGAGAAAGACATGCGCGAAGGGGATGCAGAAGCCACGC
CACAAGAACTTTTCAATGCGAAGAAGAGTTTGTTGAATTCAGTGTGCCAT
GCATACTTTAACATTATCCGCTCGGCTTCGAGTGACGCCGATTCCATAGA
AGAAACGGAGAACAATAAGCCCAAGCCCAAGAAAAGGAAACCGCCTGCAG
CACTTTCGCCAGCGTTAAAGGGGTTGTTGAGAATATCTACTTTTATTAGC
GCTGATATAATTGATGCAATTCTTGGGGCTTTAACGCCACTGCTTGAAAG
CGGGCAATTACCGTTAAGCAGTCGATTTCGTTGCCTGTCAGCGGCATACG
CTGTTCTAGGTATACATGCTCGATCGCAGAAGCTTAGTGCCGATTCTTTC
ACTGGAGATACAAGAGCACTTGATACGGCCCTTTACATCTCTATAGGAGC
GCTTTACACATCGGAAATGCCTCTAAGAGAAGACGAATCAATCACATTTG
ACGCGATTGAAGCTGTCGTGGCATCAACGAGTTTCCGTGACATGCCAGTG
GCAAGATGTGCGGCGCTAGCAAGAAGACTGGCCATCGTAGCAACAAATGC
CCCCGTTCATTCGTGCACCATTGCGCTGCTGTATGCGGCTCAGACATTGA
TGCCTTCATCAATTGTTTCTCCACTATTCCGTCAGCTGAATGAAAATAAC
GAGCTGAGCATAATTGATGACGTAGGTTTGGTTCAGAAATTCAACATGGA
CACTGATGACCCCGATATCTCTATGGCAGGCAGAAGTGCGGCTTGGGAAT
TAGTTTGTTTGGCGAGCTCGTTCCATCCGAAGGTTCAAGAGATTGCGAAA
CAATGTGCTGCCGGGATCTGTGGCTCTAGGCTTGCGAAGAGTGCAACGAG
CATTGTGTTCAAGGCGAAAGCGTTCTCAAATTCGGAAGGCGGCTTTAATC
CTACACCACAGTCTGTTTTGTTATCTGTTCGAAAACAGAGTCGCTCGGAA
TCGAAGCCGTTTTTTATTTCGGAAGATGAAACGCGAGATGTGGATGAAAT
GTTCGAAAACGACCGGATGAGGATGGAGGAATTTTTCTCGGCTCAATGGC
ACAACAGGGGGCCGAAGTAA
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