Gchil3768.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3768.t1
Unique NameGchil3768.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length152
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:216422..217001 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3768Gchil3768Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 216422..217001 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3768.t1Gchil3768.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 216422..217001 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3768.t1.stop1Gchil3768.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 216422..216424 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3768.t1.CDS1Gchil3768.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 216422..216743 -
Gchil3768.t1.CDS2Gchil3768.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 216868..217001 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3768.t1.exon1Gchil3768.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 216422..216743 -
Gchil3768.t1.exon2Gchil3768.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 216868..217001 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3768.t1.intron1Gchil3768.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000010_pilon 216744..216867 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3768.t1.start1Gchil3768.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 216999..217001 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3768.t1 ID=Gchil3768.t1|Name=Gchil3768.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=152bp
MSHSTSNQRIAISSLLNDPIRDPIRFPQPSSSQSKLYECEQCLKRFTQKA
DVRKHKKTVHEKARDYHCDECSLSFGERGNLNKHVRSIHRKERNFVCNQC
PASFPFRNGLTEHQRMKHSDDRPFECTRCPASFKKKSHLQRHTTVVHKVA
A*
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spliced messenger RNA

>Gchil3768.t1 ID=Gchil3768.t1|Name=Gchil3768.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=456bp|location=Sequence derived from alignment at tig00000010_pilon:216422..217001- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCACTCCACTTCAAACCAACGCATCGCCATCTCTTCCCTTCTCAA
TGATCCAATTCGAGACCCCATTCGTTTCCCACAGCCCTCCTCCTCACAGA
GCAAGTTGTACGAATGCGAGCAATGTCTCAAGAGATTCACGCAAAAGGCC
GACGTAAGAAAGCACAAGAAAACCGTCCACGAAAAGGCAAGAGACTATCA
CTGTGATGAGTGTTCGTTATCTTTTGGAGAACGTGGAAATCTCAACAAAC
ATGTGCGAAGCATTCATAGAAAGGAACGAAACTTTGTTTGCAACCAATGC
CCCGCTTCTTTCCCGTTTCGAAATGGACTCACTGAACATCAGCGCATGAA
ACACTCTGATGATCGTCCTTTTGAGTGTACGCGGTGTCCCGCAAGTTTCA
AGAAGAAGAGTCATTTGCAGAGACACACCACTGTCGTGCATAAAGTCGCT
GCTTGA
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protein sequence of Gchil3768.t1

>Gchil3768.t1 ID=Gchil3768.t1|Name=Gchil3768.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=152bp
MSHSTSNQRIAISSLLNDPIRDPIRFPQPSSSQSKLYECEQCLKRFTQKA
DVRKHKKTVHEKARDYHCDECSLSFGERGNLNKHVRSIHRKERNFVCNQC
PASFPFRNGLTEHQRMKHSDDRPFECTRCPASFKKKSHLQRHTTVVHKVA
A*
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mRNA from alignment at tig00000010_pilon:216422..217001-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3768.t1 ID=Gchil3768.t1|Name=Gchil3768.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=580bp|location=Sequence derived from alignment at tig00000010_pilon:216422..217001- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTCACTCCACTTCAAACCAACGCATCGCCATCTCTTCCCTTCTCAA
TGATCCAATTCGAGACCCCATTCGTTTCCCACAGCCCTCCTCCTCACAGA
GCAAGTTGTACGAATGCGAGCAATGTCTCAAGAGGTAAGATATTCCGCTA
AATCCTCTCGTCTCTACGTACTTTCCCCCCGCCCCCTTTTCTCCGCTCTC
AGCTACTTACTCTTTTTTTTTATTATTTAAAAAAAAATCTTTCCCCCACA
TCTTCTAGATTCACGCAAAAGGCCGACGTAAGAAAGCACAAGAAAACCGT
CCACGAAAAGGCAAGAGACTATCACTGTGATGAGTGTTCGTTATCTTTTG
GAGAACGTGGAAATCTCAACAAACATGTGCGAAGCATTCATAGAAAGGAA
CGAAACTTTGTTTGCAACCAATGCCCCGCTTCTTTCCCGTTTCGAAATGG
ACTCACTGAACATCAGCGCATGAAACACTCTGATGATCGTCCTTTTGAGT
GTACGCGGTGTCCCGCAAGTTTCAAGAAGAAGAGTCATTTGCAGAGACAC
ACCACTGTCGTGCATAAAGTCGCTGCTTGA
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Coding sequence (CDS) from alignment at tig00000010_pilon:216422..217001-

>Gchil3768.t1 ID=Gchil3768.t1|Name=Gchil3768.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=456bp|location=Sequence derived from alignment at tig00000010_pilon:216422..217001- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTCACTCCACTTCAAACCAACGCATCGCCATCTCTTCCCTTCTCAA
TGATCCAATTCGAGACCCCATTCGTTTCCCACAGCCCTCCTCCTCACAGA
GCAAGTTGTACGAATGCGAGCAATGTCTCAAGAGATTCACGCAAAAGGCC
GACGTAAGAAAGCACAAGAAAACCGTCCACGAAAAGGCAAGAGACTATCA
CTGTGATGAGTGTTCGTTATCTTTTGGAGAACGTGGAAATCTCAACAAAC
ATGTGCGAAGCATTCATAGAAAGGAACGAAACTTTGTTTGCAACCAATGC
CCCGCTTCTTTCCCGTTTCGAAATGGACTCACTGAACATCAGCGCATGAA
ACACTCTGATGATCGTCCTTTTGAGTGTACGCGGTGTCCCGCAAGTTTCA
AGAAGAAGAGTCATTTGCAGAGACACACCACTGTCGTGCATAAAGTCGCT
GCTTGA
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