Gchil3752.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3752.t1
Unique Name	Gchil3752.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	570

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00025222_pilon	contig	tig00025222_pilon:1206629..1208338 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	203122.Sde_2938
PFAMs	Alpha-amylase,Alpha-amylase_C,CBM26,CBM_20
Max annot lvl	1236\|Gammaproteobacteria
KEGG ko	ko:K01176
KEGG Reaction	R02108,R02112,R11262
KEGG Pathway	ko00500,ko01100,ko04973,map00500,map01100,map04973
Evalue	5.58e-211
EggNOG OGs	COG0366@1\|root,COG0366@2\|Bacteria,1MVQA@1224\|Proteobacteria,1RPA4@1236\|Gammaproteobacteria,46654@72275\|Alteromonadaceae
EC	3.2.1.1
Description	COG0366 Glycosidases
COG category	G
CAZy	GH13
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3752	Gchil3752	Gracilaria chilensis NLEC103_M9 male	gene	tig00025222_pilon 1206629..1208338 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3752.t1.start1	Gchil3752.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00025222_pilon 1206629..1206631 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3752.t1.CDS1	Gchil3752.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00025222_pilon 1206629..1208338 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3752.t1.exon1	Gchil3752.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00025222_pilon 1206629..1208338 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3752.t1.stop1	Gchil3752.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00025222_pilon 1208336..1208338 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3752.t1	Gchil3752.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00025222_pilon 1206629..1208338 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00025222_pilon:1206629..1208338+
coding sequence from alignment at tig00025222_pilon:1206629..1208338+

mRNA sequence

>Gchil3752.t1 ID=Gchil3752.t1|Name=Gchil3752.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=570bp
MALPNSLVFITLAFASLLYGALSNTRTAFVHLFEWSWNDIANECEQHLAP
KRFSAVQVSPPQKSVDRPEWWSRYQPLSYAVEGRSGTRDQFISMVQRCAK
VGVDIYVDAIINHMAALDRKFPQVPYGPNDFHSCVTPIKYNNRFQVQNCD
LVGLNDLKTESEYVRSTIAQYLNDLIGMGVKGFRIDAAKHMPAADVAAIV
AKLQKPVYIFQEVIGAGGEAVQPTEYTGHGSVTEFNFERTLGFYFKGRGP
LKELQNIVNFKGWLSSDEAVVFVSNHDDQRQNTYNTLTYKDVGDLYYIGE
IFSLSYPYGYPKVMSSYFFEDHDQGPPSKGVHSGARCGKEWVCEHRWRGI
ANMVEFRRVCSTQFQVTNWWDNGNNQIAFGRGGLGFVVINREDNLSMDQI
FDTGMKSGNYCDIVNGEFESGVCSGNVIVVGGDGKARFQVDTIGAAAIHG
GTRIGDISLEMGNLRVKDQSSNVVQVTFSCRTGNDRPGQSVFVIGSEDEL
GQWDVSKAVKLLRGENAVWTRDITIKYGKTVEWKCLKRDDSNVREAVQWE
RGENNIFVSLSEQKVVGQI*

spliced messenger RNA

>Gchil3752.t1 ID=Gchil3752.t1|Name=Gchil3752.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1710bp|location=Sequence derived from alignment at tig00025222_pilon:1206629..1208338+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCTTCCCAACTCCCTAGTCTTCATCACTTTGGCTTTTGCGTCGTT
ATTGTACGGTGCCCTGTCAAACACGCGAACGGCTTTTGTCCATCTCTTTG
AATGGAGCTGGAACGACATTGCCAATGAATGTGAGCAACATTTGGCACCC
AAACGATTCTCAGCAGTGCAGGTGTCGCCCCCCCAAAAATCCGTCGATAG
GCCAGAATGGTGGTCTCGATATCAACCTCTCAGTTACGCAGTGGAAGGAA
GAAGCGGCACACGTGATCAATTTATCTCCATGGTTCAGCGTTGTGCTAAA
GTAGGTGTTGATATTTACGTAGACGCAATAATTAATCATATGGCCGCATT
GGATCGAAAATTTCCACAAGTACCGTACGGCCCGAATGATTTCCATAGTT
GTGTCACTCCAATCAAGTACAATAATCGTTTTCAGGTGCAAAATTGTGAC
TTGGTTGGCTTAAATGACTTAAAGACAGAATCGGAATATGTTCGATCCAC
CATTGCACAATACTTGAATGATCTCATTGGCATGGGCGTGAAGGGGTTTC
GAATCGATGCTGCCAAGCACATGCCGGCTGCTGATGTTGCAGCCATAGTC
GCAAAGTTACAGAAACCAGTGTACATTTTCCAAGAAGTAATTGGGGCTGG
AGGAGAAGCTGTGCAGCCAACGGAGTATACTGGTCATGGTTCTGTTACTG
AATTCAACTTTGAACGCACATTGGGCTTCTATTTCAAGGGAAGAGGGCCT
CTTAAAGAACTTCAAAATATTGTCAACTTTAAAGGATGGCTCAGCAGTGA
TGAAGCTGTTGTATTTGTTTCGAATCACGACGATCAGCGTCAAAATACGT
ACAATACTCTCACTTATAAGGATGTTGGAGATTTGTACTACATCGGAGAG
ATTTTTAGTTTGTCTTATCCGTATGGCTATCCCAAGGTCATGTCCAGCTA
TTTTTTTGAGGATCATGATCAGGGTCCGCCCTCGAAGGGGGTACATTCGG
GCGCGCGATGTGGAAAAGAATGGGTATGTGAGCACCGATGGAGAGGAATC
GCAAACATGGTTGAATTTCGGCGCGTCTGCTCCACTCAGTTCCAAGTCAC
AAACTGGTGGGACAATGGCAATAATCAAATCGCATTTGGACGAGGTGGTC
TGGGTTTTGTCGTTATCAATCGTGAGGACAATCTTTCTATGGATCAAATA
TTCGATACTGGAATGAAATCAGGTAACTATTGTGACATTGTGAACGGTGA
ATTTGAGAGTGGTGTTTGTAGTGGTAATGTGATCGTTGTAGGAGGGGATG
GGAAGGCTCGGTTTCAAGTTGATACTATTGGTGCAGCTGCAATACATGGG
GGAACCAGGATTGGAGATATATCCCTTGAAATGGGCAACCTGAGGGTTAA
GGATCAGAGCAGTAACGTGGTGCAAGTAACATTTTCTTGCCGAACTGGAA
ATGATCGACCCGGACAAAGCGTGTTCGTGATTGGTAGTGAGGATGAACTT
GGTCAGTGGGACGTTTCGAAGGCTGTAAAACTCCTTCGAGGGGAGAATGC
TGTATGGACCAGAGATATCACGATAAAGTACGGCAAAACGGTTGAGTGGA
AGTGCTTGAAGCGGGATGATTCAAACGTAAGAGAAGCAGTTCAGTGGGAG
AGGGGAGAAAACAACATTTTTGTTTCACTTTCAGAGCAAAAGGTTGTCGG
CCAGATATAA

protein sequence of Gchil3752.t1

>Gchil3752.t1 ID=Gchil3752.t1|Name=Gchil3752.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=570bp
MALPNSLVFITLAFASLLYGALSNTRTAFVHLFEWSWNDIANECEQHLAP
KRFSAVQVSPPQKSVDRPEWWSRYQPLSYAVEGRSGTRDQFISMVQRCAK
VGVDIYVDAIINHMAALDRKFPQVPYGPNDFHSCVTPIKYNNRFQVQNCD
LVGLNDLKTESEYVRSTIAQYLNDLIGMGVKGFRIDAAKHMPAADVAAIV
AKLQKPVYIFQEVIGAGGEAVQPTEYTGHGSVTEFNFERTLGFYFKGRGP
LKELQNIVNFKGWLSSDEAVVFVSNHDDQRQNTYNTLTYKDVGDLYYIGE
IFSLSYPYGYPKVMSSYFFEDHDQGPPSKGVHSGARCGKEWVCEHRWRGI
ANMVEFRRVCSTQFQVTNWWDNGNNQIAFGRGGLGFVVINREDNLSMDQI
FDTGMKSGNYCDIVNGEFESGVCSGNVIVVGGDGKARFQVDTIGAAAIHG
GTRIGDISLEMGNLRVKDQSSNVVQVTFSCRTGNDRPGQSVFVIGSEDEL
GQWDVSKAVKLLRGENAVWTRDITIKYGKTVEWKCLKRDDSNVREAVQWE
RGENNIFVSLSEQKVVGQI*

mRNA from alignment at tig00025222_pilon:1206629..1208338+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3752.t1 ID=Gchil3752.t1|Name=Gchil3752.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1710bp|location=Sequence derived from alignment at tig00025222_pilon:1206629..1208338+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCTTCCCAACTCCCTAGTCTTCATCACTTTGGCTTTTGCGTCGTT
ATTGTACGGTGCCCTGTCAAACACGCGAACGGCTTTTGTCCATCTCTTTG
AATGGAGCTGGAACGACATTGCCAATGAATGTGAGCAACATTTGGCACCC
AAACGATTCTCAGCAGTGCAGGTGTCGCCCCCCCAAAAATCCGTCGATAG
GCCAGAATGGTGGTCTCGATATCAACCTCTCAGTTACGCAGTGGAAGGAA
GAAGCGGCACACGTGATCAATTTATCTCCATGGTTCAGCGTTGTGCTAAA
GTAGGTGTTGATATTTACGTAGACGCAATAATTAATCATATGGCCGCATT
GGATCGAAAATTTCCACAAGTACCGTACGGCCCGAATGATTTCCATAGTT
GTGTCACTCCAATCAAGTACAATAATCGTTTTCAGGTGCAAAATTGTGAC
TTGGTTGGCTTAAATGACTTAAAGACAGAATCGGAATATGTTCGATCCAC
CATTGCACAATACTTGAATGATCTCATTGGCATGGGCGTGAAGGGGTTTC
GAATCGATGCTGCCAAGCACATGCCGGCTGCTGATGTTGCAGCCATAGTC
GCAAAGTTACAGAAACCAGTGTACATTTTCCAAGAAGTAATTGGGGCTGG
AGGAGAAGCTGTGCAGCCAACGGAGTATACTGGTCATGGTTCTGTTACTG
AATTCAACTTTGAACGCACATTGGGCTTCTATTTCAAGGGAAGAGGGCCT
CTTAAAGAACTTCAAAATATTGTCAACTTTAAAGGATGGCTCAGCAGTGA
TGAAGCTGTTGTATTTGTTTCGAATCACGACGATCAGCGTCAAAATACGT
ACAATACTCTCACTTATAAGGATGTTGGAGATTTGTACTACATCGGAGAG
ATTTTTAGTTTGTCTTATCCGTATGGCTATCCCAAGGTCATGTCCAGCTA
TTTTTTTGAGGATCATGATCAGGGTCCGCCCTCGAAGGGGGTACATTCGG
GCGCGCGATGTGGAAAAGAATGGGTATGTGAGCACCGATGGAGAGGAATC
GCAAACATGGTTGAATTTCGGCGCGTCTGCTCCACTCAGTTCCAAGTCAC
AAACTGGTGGGACAATGGCAATAATCAAATCGCATTTGGACGAGGTGGTC
TGGGTTTTGTCGTTATCAATCGTGAGGACAATCTTTCTATGGATCAAATA
TTCGATACTGGAATGAAATCAGGTAACTATTGTGACATTGTGAACGGTGA
ATTTGAGAGTGGTGTTTGTAGTGGTAATGTGATCGTTGTAGGAGGGGATG
GGAAGGCTCGGTTTCAAGTTGATACTATTGGTGCAGCTGCAATACATGGG
GGAACCAGGATTGGAGATATATCCCTTGAAATGGGCAACCTGAGGGTTAA
GGATCAGAGCAGTAACGTGGTGCAAGTAACATTTTCTTGCCGAACTGGAA
ATGATCGACCCGGACAAAGCGTGTTCGTGATTGGTAGTGAGGATGAACTT
GGTCAGTGGGACGTTTCGAAGGCTGTAAAACTCCTTCGAGGGGAGAATGC
TGTATGGACCAGAGATATCACGATAAAGTACGGCAAAACGGTTGAGTGGA
AGTGCTTGAAGCGGGATGATTCAAACGTAAGAGAAGCAGTTCAGTGGGAG
AGGGGAGAAAACAACATTTTTGTTTCACTTTCAGAGCAAAAGGTTGTCGG
CCAGATATAA

Coding sequence (CDS) from alignment at tig00025222_pilon:1206629..1208338+

>Gchil3752.t1 ID=Gchil3752.t1|Name=Gchil3752.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1710bp|location=Sequence derived from alignment at tig00025222_pilon:1206629..1208338+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCTTCCCAACTCCCTAGTCTTCATCACTTTGGCTTTTGCGTCGTT
ATTGTACGGTGCCCTGTCAAACACGCGAACGGCTTTTGTCCATCTCTTTG
AATGGAGCTGGAACGACATTGCCAATGAATGTGAGCAACATTTGGCACCC
AAACGATTCTCAGCAGTGCAGGTGTCGCCCCCCCAAAAATCCGTCGATAG
GCCAGAATGGTGGTCTCGATATCAACCTCTCAGTTACGCAGTGGAAGGAA
GAAGCGGCACACGTGATCAATTTATCTCCATGGTTCAGCGTTGTGCTAAA
GTAGGTGTTGATATTTACGTAGACGCAATAATTAATCATATGGCCGCATT
GGATCGAAAATTTCCACAAGTACCGTACGGCCCGAATGATTTCCATAGTT
GTGTCACTCCAATCAAGTACAATAATCGTTTTCAGGTGCAAAATTGTGAC
TTGGTTGGCTTAAATGACTTAAAGACAGAATCGGAATATGTTCGATCCAC
CATTGCACAATACTTGAATGATCTCATTGGCATGGGCGTGAAGGGGTTTC
GAATCGATGCTGCCAAGCACATGCCGGCTGCTGATGTTGCAGCCATAGTC
GCAAAGTTACAGAAACCAGTGTACATTTTCCAAGAAGTAATTGGGGCTGG
AGGAGAAGCTGTGCAGCCAACGGAGTATACTGGTCATGGTTCTGTTACTG
AATTCAACTTTGAACGCACATTGGGCTTCTATTTCAAGGGAAGAGGGCCT
CTTAAAGAACTTCAAAATATTGTCAACTTTAAAGGATGGCTCAGCAGTGA
TGAAGCTGTTGTATTTGTTTCGAATCACGACGATCAGCGTCAAAATACGT
ACAATACTCTCACTTATAAGGATGTTGGAGATTTGTACTACATCGGAGAG
ATTTTTAGTTTGTCTTATCCGTATGGCTATCCCAAGGTCATGTCCAGCTA
TTTTTTTGAGGATCATGATCAGGGTCCGCCCTCGAAGGGGGTACATTCGG
GCGCGCGATGTGGAAAAGAATGGGTATGTGAGCACCGATGGAGAGGAATC
GCAAACATGGTTGAATTTCGGCGCGTCTGCTCCACTCAGTTCCAAGTCAC
AAACTGGTGGGACAATGGCAATAATCAAATCGCATTTGGACGAGGTGGTC
TGGGTTTTGTCGTTATCAATCGTGAGGACAATCTTTCTATGGATCAAATA
TTCGATACTGGAATGAAATCAGGTAACTATTGTGACATTGTGAACGGTGA
ATTTGAGAGTGGTGTTTGTAGTGGTAATGTGATCGTTGTAGGAGGGGATG
GGAAGGCTCGGTTTCAAGTTGATACTATTGGTGCAGCTGCAATACATGGG
GGAACCAGGATTGGAGATATATCCCTTGAAATGGGCAACCTGAGGGTTAA
GGATCAGAGCAGTAACGTGGTGCAAGTAACATTTTCTTGCCGAACTGGAA
ATGATCGACCCGGACAAAGCGTGTTCGTGATTGGTAGTGAGGATGAACTT
GGTCAGTGGGACGTTTCGAAGGCTGTAAAACTCCTTCGAGGGGAGAATGC
TGTATGGACCAGAGATATCACGATAAAGTACGGCAAAACGGTTGAGTGGA
AGTGCTTGAAGCGGGATGATTCAAACGTAAGAGAAGCAGTTCAGTGGGAG
AGGGGAGAAAACAACATTTTTGTTTCACTTTCAGAGCAAAAGGTTGTCGG
CCAGATATAA