Gchil3751.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3751.t1
Unique NameGchil3751.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length274
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025222_piloncontigtig00025222_pilon:1204090..1205037 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3751Gchil3751Gracilaria chilensis NLEC103_M9 malegenetig00025222_pilon 1204090..1205037 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3751.t1Gchil3751.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025222_pilon 1204090..1205037 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3751.t1.stop1Gchil3751.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025222_pilon 1204090..1204092 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3751.t1.CDS1Gchil3751.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 1204090..1204322 -
Gchil3751.t1.CDS2Gchil3751.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 1204449..1205037 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3751.t1.exon1Gchil3751.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 1204090..1204322 -
Gchil3751.t1.exon2Gchil3751.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 1204449..1205037 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3751.t1.intron1Gchil3751.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00025222_pilon 1204323..1204448 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3751.t1.start1Gchil3751.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025222_pilon 1205035..1205037 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3751.t1 ID=Gchil3751.t1|Name=Gchil3751.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=274bp
MLGDAAPKIDPNGPKLNGNAPPKLSPNANDPAPPGPAKPPAACCPDAPAA
PLLPLAAEAAALLPVAPAPVPSCNPTNTVPGVDSSSSFPSLSSPPSPLSP
FAGETEGDADGVGLEGDFDCVGEVLGETDTEGVTDGEGVIEGETDIEAVG
DGEAETEGVTDGEAELDAEGDGVGVGVRDLLGLGDGRELATAAAPPALFC
RLRGSAVTDADRARRDSSTKKQGKIVSFMFMISVEYMVLSTTGVMDDRKN
PSLGAEMVFIGVSAVRLHWTHVY*
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spliced messenger RNA

>Gchil3751.t1 ID=Gchil3751.t1|Name=Gchil3751.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=822bp|location=Sequence derived from alignment at tig00025222_pilon:1204090..1205037- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGGCGACGCGGCGCCAAAGATTGACCCGAACGGTCCGAAGTTGAA
CGGGAACGCTCCACCGAAGTTGTCGCCAAACGCAAACGATCCGGCCCCAC
CGGGGCCCGCGAAGCCGCCAGCCGCCTGCTGTCCGGATGCACCCGCCGCG
CCGCTGTTGCCATTGGCTGCTGAGGCTGCCGCGTTGTTGCCCGTCGCACC
TGCGCCGGTGCCGTCTTGCAACCCGACCAACACTGTGCCCGGCGTTGACT
CTTCATCCTCCTTTCCGTCGCTCTCGTCTCCTCCTTCGCCCTTGTCGCCC
TTCGCGGGCGAGACTGAGGGGGATGCCGACGGAGTGGGCTTGGAAGGCGA
CTTTGATTGCGTCGGGGAAGTACTCGGAGAAACCGACACGGAAGGCGTCA
CAGACGGTGAGGGCGTCATCGAAGGTGAAACCGATATCGAAGCGGTTGGT
GACGGCGAAGCCGAGACAGAGGGCGTCACAGATGGTGAGGCGGAGCTGGA
TGCAGAGGGCGATGGAGTTGGCGTCGGAGTGCGAGACTTGCTCGGGCTTG
GGGACGGTCGCGAATTAGCAACGGCCGCCGCTCCGCCTGCATTGTTTTGC
CGGCTGAGGGGAAGCGCCGTTACAGATGCCGATCGTGCCAGAAGAGACAG
TAGCACGAAGAAGCAAGGGAAAATTGTCAGTTTCATGTTCATGATATCAG
TAGAATATATGGTTTTGAGTACTACTGGTGTGATGGACGATCGAAAGAAT
CCAAGTCTTGGAGCGGAAATGGTTTTTATAGGAGTTAGTGCAGTCCGACT
TCATTGGACTCATGTGTACTAG
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protein sequence of Gchil3751.t1

>Gchil3751.t1 ID=Gchil3751.t1|Name=Gchil3751.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=274bp
MLGDAAPKIDPNGPKLNGNAPPKLSPNANDPAPPGPAKPPAACCPDAPAA
PLLPLAAEAAALLPVAPAPVPSCNPTNTVPGVDSSSSFPSLSSPPSPLSP
FAGETEGDADGVGLEGDFDCVGEVLGETDTEGVTDGEGVIEGETDIEAVG
DGEAETEGVTDGEAELDAEGDGVGVGVRDLLGLGDGRELATAAAPPALFC
RLRGSAVTDADRARRDSSTKKQGKIVSFMFMISVEYMVLSTTGVMDDRKN
PSLGAEMVFIGVSAVRLHWTHVY*
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mRNA from alignment at tig00025222_pilon:1204090..1205037-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3751.t1 ID=Gchil3751.t1|Name=Gchil3751.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=948bp|location=Sequence derived from alignment at tig00025222_pilon:1204090..1205037- (Gracilaria chilensis NLEC103_M9 male)
ATGCTCGGCGACGCGGCGCCAAAGATTGACCCGAACGGTCCGAAGTTGAA
CGGGAACGCTCCACCGAAGTTGTCGCCAAACGCAAACGATCCGGCCCCAC
CGGGGCCCGCGAAGCCGCCAGCCGCCTGCTGTCCGGATGCACCCGCCGCG
CCGCTGTTGCCATTGGCTGCTGAGGCTGCCGCGTTGTTGCCCGTCGCACC
TGCGCCGGTGCCGTCTTGCAACCCGACCAACACTGTGCCCGGCGTTGACT
CTTCATCCTCCTTTCCGTCGCTCTCGTCTCCTCCTTCGCCCTTGTCGCCC
TTCGCGGGCGAGACTGAGGGGGATGCCGACGGAGTGGGCTTGGAAGGCGA
CTTTGATTGCGTCGGGGAAGTACTCGGAGAAACCGACACGGAAGGCGTCA
CAGACGGTGAGGGCGTCATCGAAGGTGAAACCGATATCGAAGCGGTTGGT
GACGGCGAAGCCGAGACAGAGGGCGTCACAGATGGTGAGGCGGAGCTGGA
TGCAGAGGGCGATGGAGTTGGCGTCGGAGTGCGAGACTTGCTCGGGCTTG
GGGACGGTCGCGAATTAGCAACGGCCGCCGCTCCGCCTGGTCCTGCCACT
GCCCCCGCACTATCCTCACCCGCCGCTGCTCCACTGCCACTGTTATTGTC
CGCAGTCACGGCGACCACATTGTTTCCTGAGGCCCCCGCGGCACCACTCT
GATTGCCAACTGCAGCATTGTTTTGCCGGCTGAGGGGAAGCGCCGTTACA
GATGCCGATCGTGCCAGAAGAGACAGTAGCACGAAGAAGCAAGGGAAAAT
TGTCAGTTTCATGTTCATGATATCAGTAGAATATATGGTTTTGAGTACTA
CTGGTGTGATGGACGATCGAAAGAATCCAAGTCTTGGAGCGGAAATGGTT
TTTATAGGAGTTAGTGCAGTCCGACTTCATTGGACTCATGTGTACTAG
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Coding sequence (CDS) from alignment at tig00025222_pilon:1204090..1205037-

>Gchil3751.t1 ID=Gchil3751.t1|Name=Gchil3751.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=822bp|location=Sequence derived from alignment at tig00025222_pilon:1204090..1205037- (Gracilaria chilensis NLEC103_M9 male)
ATGCTCGGCGACGCGGCGCCAAAGATTGACCCGAACGGTCCGAAGTTGAA
CGGGAACGCTCCACCGAAGTTGTCGCCAAACGCAAACGATCCGGCCCCAC
CGGGGCCCGCGAAGCCGCCAGCCGCCTGCTGTCCGGATGCACCCGCCGCG
CCGCTGTTGCCATTGGCTGCTGAGGCTGCCGCGTTGTTGCCCGTCGCACC
TGCGCCGGTGCCGTCTTGCAACCCGACCAACACTGTGCCCGGCGTTGACT
CTTCATCCTCCTTTCCGTCGCTCTCGTCTCCTCCTTCGCCCTTGTCGCCC
TTCGCGGGCGAGACTGAGGGGGATGCCGACGGAGTGGGCTTGGAAGGCGA
CTTTGATTGCGTCGGGGAAGTACTCGGAGAAACCGACACGGAAGGCGTCA
CAGACGGTGAGGGCGTCATCGAAGGTGAAACCGATATCGAAGCGGTTGGT
GACGGCGAAGCCGAGACAGAGGGCGTCACAGATGGTGAGGCGGAGCTGGA
TGCAGAGGGCGATGGAGTTGGCGTCGGAGTGCGAGACTTGCTCGGGCTTG
GGGACGGTCGCGAATTAGCAACGGCCGCCGCTCCGCCTGCATTGTTTTGC
CGGCTGAGGGGAAGCGCCGTTACAGATGCCGATCGTGCCAGAAGAGACAG
TAGCACGAAGAAGCAAGGGAAAATTGTCAGTTTCATGTTCATGATATCAG
TAGAATATATGGTTTTGAGTACTACTGGTGTGATGGACGATCGAAAGAAT
CCAAGTCTTGGAGCGGAAATGGTTTTTATAGGAGTTAGTGCAGTCCGACT
TCATTGGACTCATGTGTACTAG
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