Gchil375.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil375.t1
Unique NameGchil375.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length104
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000212_piloncontigtig00000212_pilon:660538..660922 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4098.XP_009591626.1
PFAMsA2L_zn_ribbon
Max annot lvl35493|Streptophyta
Evalue6.71e-24
EggNOG OGs2CXBB@1|root,2S4KC@2759|Eukaryota,37VZQ@33090|Viridiplantae,3GKAF@35493|Streptophyta,44KNS@71274|asterids
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil375Gchil375Gracilaria chilensis NLEC103_M9 malegenetig00000212_pilon 660538..660922 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil375.t1Gchil375.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000212_pilon 660538..660922 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil375.t1.start1Gchil375.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000212_pilon 660538..660540 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil375.t1.CDS1Gchil375.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000212_pilon 660538..660797 +
Gchil375.t1.CDS2Gchil375.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000212_pilon 660871..660922 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil375.t1.exon1Gchil375.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000212_pilon 660538..660797 +
Gchil375.t1.exon2Gchil375.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000212_pilon 660871..660922 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil375.t1.intron1Gchil375.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000212_pilon 660798..660870 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil375.t1.stop1Gchil375.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000212_pilon 660920..660922 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil375.t1 ID=Gchil375.t1|Name=Gchil375.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=104bp
MAPRKKAISPARRQRPLMQLAPESLSPDILTPLSPDVSVLVGSIALSIPF
FVAAVLFGERIYRQRTCTQCNGSGLVKKGRFMKRCPKCGGFLPWQSWKRF
FTG*
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spliced messenger RNA

>Gchil375.t1 ID=Gchil375.t1|Name=Gchil375.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=312bp|location=Sequence derived from alignment at tig00000212_pilon:660538..660922+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCTCGGAAGAAGGCCATCTCTCCTGCACGACGCCAACGTCCCCT
TATGCAGCTCGCGCCTGAGTCGCTCTCCCCAGACATACTCACACCACTAT
CGCCGGACGTATCCGTGCTGGTTGGCAGCATTGCCCTTTCCATCCCGTTC
TTCGTGGCGGCTGTATTGTTTGGCGAGCGAATTTATCGCCAACGCACTTG
TACTCAATGCAATGGTAGCGGACTCGTAAAAAAAGGCCGTTTCATGAAAA
GATGTCCCAAGTGCGGTGGTTTCTTGCCGTGGCAGAGTTGGAAGCGTTTC
TTCACAGGTTAG
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protein sequence of Gchil375.t1

>Gchil375.t1 ID=Gchil375.t1|Name=Gchil375.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=104bp
MAPRKKAISPARRQRPLMQLAPESLSPDILTPLSPDVSVLVGSIALSIPF
FVAAVLFGERIYRQRTCTQCNGSGLVKKGRFMKRCPKCGGFLPWQSWKRF
FTG*
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mRNA from alignment at tig00000212_pilon:660538..660922+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil375.t1 ID=Gchil375.t1|Name=Gchil375.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=385bp|location=Sequence derived from alignment at tig00000212_pilon:660538..660922+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCTCGGAAGAAGGCCATCTCTCCTGCACGACGCCAACGTCCCCT
TATGCAGCTCGCGCCTGAGTCGCTCTCCCCAGACATACTCACACCACTAT
CGCCGGACGTATCCGTGCTGGTTGGCAGCATTGCCCTTTCCATCCCGTTC
TTCGTGGCGGCTGTATTGTTTGGCGAGCGAATTTATCGCCAACGCACTTG
TACTCAATGCAATGGTAGCGGACTCGTAAAAAAAGGCCGTTTCATGAAAA
GATGTCCCAAGTAAGTTGTAGATTATTCTTGGTTCATAGATTTCTTCTGT
TTCTATTTACTAATGTGCTTCTATCTGCGTTAGGTGCGGTGGTTTCTTGC
CGTGGCAGAGTTGGAAGCGTTTCTTCACAGGTTAG
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Coding sequence (CDS) from alignment at tig00000212_pilon:660538..660922+

>Gchil375.t1 ID=Gchil375.t1|Name=Gchil375.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=312bp|location=Sequence derived from alignment at tig00000212_pilon:660538..660922+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCTCGGAAGAAGGCCATCTCTCCTGCACGACGCCAACGTCCCCT
TATGCAGCTCGCGCCTGAGTCGCTCTCCCCAGACATACTCACACCACTAT
CGCCGGACGTATCCGTGCTGGTTGGCAGCATTGCCCTTTCCATCCCGTTC
TTCGTGGCGGCTGTATTGTTTGGCGAGCGAATTTATCGCCAACGCACTTG
TACTCAATGCAATGGTAGCGGACTCGTAAAAAAAGGCCGTTTCATGAAAA
GATGTCCCAAGTGCGGTGGTTTCTTGCCGTGGCAGAGTTGGAAGCGTTTC
TTCACAGGTTAG
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