Gchil3749.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3749.t1
Unique NameGchil3749.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length111
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025222_piloncontigtig00025222_pilon:1182863..1183195 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3749Gchil3749Gracilaria chilensis NLEC103_M9 malegenetig00025222_pilon 1182863..1183195 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3749.t1.start1Gchil3749.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025222_pilon 1182863..1182865 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3749.t1.CDS1Gchil3749.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 1182863..1183195 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3749.t1.exon1Gchil3749.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 1182863..1183195 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3749.t1.stop1Gchil3749.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025222_pilon 1183193..1183195 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3749.t1Gchil3749.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025222_pilon 1182863..1183195 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3749.t1 ID=Gchil3749.t1|Name=Gchil3749.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=111bp
MSTASNKMTYVIGAVLLVLGTAVVTAHVTSNEHRFGVARVMNVGREAKGV
RLHDEYAHLKATGAGIVDEKMLQVVRGIVDDICSSITYTACRSYYNAKDT
DWCKICLAYK*
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spliced messenger RNA

>Gchil3749.t1 ID=Gchil3749.t1|Name=Gchil3749.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=333bp|location=Sequence derived from alignment at tig00025222_pilon:1182863..1183195+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGACCGCGTCAAACAAGATGACCTACGTCATCGGCGCCGTTCTTCT
GGTGTTGGGCACCGCTGTGGTTACTGCGCATGTGACTAGCAATGAGCACA
GATTCGGCGTTGCTCGTGTGATGAACGTTGGACGTGAAGCTAAAGGCGTT
CGTTTGCACGATGAATATGCACATCTGAAAGCAACTGGTGCTGGTATCGT
AGATGAAAAGATGCTCCAAGTTGTCCGTGGAATTGTGGATGATATTTGTA
GTTCCATAACGTACACCGCTTGTAGGTCTTATTATAATGCCAAAGATACA
GACTGGTGTAAGATATGCTTGGCGTACAAGTAG
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protein sequence of Gchil3749.t1

>Gchil3749.t1 ID=Gchil3749.t1|Name=Gchil3749.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=111bp
MSTASNKMTYVIGAVLLVLGTAVVTAHVTSNEHRFGVARVMNVGREAKGV
RLHDEYAHLKATGAGIVDEKMLQVVRGIVDDICSSITYTACRSYYNAKDT
DWCKICLAYK*
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mRNA from alignment at tig00025222_pilon:1182863..1183195+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3749.t1 ID=Gchil3749.t1|Name=Gchil3749.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=333bp|location=Sequence derived from alignment at tig00025222_pilon:1182863..1183195+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGACCGCGTCAAACAAGATGACCTACGTCATCGGCGCCGTTCTTCT
GGTGTTGGGCACCGCTGTGGTTACTGCGCATGTGACTAGCAATGAGCACA
GATTCGGCGTTGCTCGTGTGATGAACGTTGGACGTGAAGCTAAAGGCGTT
CGTTTGCACGATGAATATGCACATCTGAAAGCAACTGGTGCTGGTATCGT
AGATGAAAAGATGCTCCAAGTTGTCCGTGGAATTGTGGATGATATTTGTA
GTTCCATAACGTACACCGCTTGTAGGTCTTATTATAATGCCAAAGATACA
GACTGGTGTAAGATATGCTTGGCGTACAAGTAG
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Coding sequence (CDS) from alignment at tig00025222_pilon:1182863..1183195+

>Gchil3749.t1 ID=Gchil3749.t1|Name=Gchil3749.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=333bp|location=Sequence derived from alignment at tig00025222_pilon:1182863..1183195+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGACCGCGTCAAACAAGATGACCTACGTCATCGGCGCCGTTCTTCT
GGTGTTGGGCACCGCTGTGGTTACTGCGCATGTGACTAGCAATGAGCACA
GATTCGGCGTTGCTCGTGTGATGAACGTTGGACGTGAAGCTAAAGGCGTT
CGTTTGCACGATGAATATGCACATCTGAAAGCAACTGGTGCTGGTATCGT
AGATGAAAAGATGCTCCAAGTTGTCCGTGGAATTGTGGATGATATTTGTA
GTTCCATAACGTACACCGCTTGTAGGTCTTATTATAATGCCAAAGATACA
GACTGGTGTAAGATATGCTTGGCGTACAAGTAG
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