Gchil3746.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3746.t1
Unique NameGchil3746.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length449
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025222_piloncontigtig00025222_pilon:1108658..1110004 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7719.XP_002129829.1
PFAMsMFS_5
Max annot lvl33208|Metazoa
Evalue3.84e-130
EggNOG OGsKOG4332@1|root,KOG4332@2759|Eukaryota,38BSQ@33154|Opisthokonta,3BH1S@33208|Metazoa,3CW1T@33213|Bilateria,48IV1@7711|Chordata
DescriptionSugar-tranasporters, 12 TM
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3746Gchil3746Gracilaria chilensis NLEC103_M9 malegenetig00025222_pilon 1108658..1110004 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3746.t1.stop1Gchil3746.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025222_pilon 1108658..1108660 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3746.t1.CDS1Gchil3746.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 1108658..1110004 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3746.t1.exon1Gchil3746.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 1108658..1110004 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3746.t1.start1Gchil3746.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025222_pilon 1110002..1110004 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3746.t1Gchil3746.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025222_pilon 1108658..1110004 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3746.t1 ID=Gchil3746.t1|Name=Gchil3746.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=449bp
MYHFSFCILVSATVFSHLLTRRFQKAASSKEDPDTDDNSFRAFQVNYLLV
YFLAVAADWVQGPYVYALYSHYGFAKTEIARLYITGFASSAVFGTFVASV
ADKYGRRNNALVYCITYTLSCATKHSPNFWMLLLGRILGGIAYSILFSAF
EAWMVYEHQHRGFDSSQLGITFARAQFGNGIIAIIAGQVAGWFAGHYGKV
MPFDVSIFVLLILGVLLAYSWTENYGDAKQSVGGGFARAWVSLLSDEKIL
LLGVSQAAFEGAMYTFTFVWTPALQTARGQVGEIPHGTIFSSFMAATMIG
SNLFAFWQRSIKVELLMRNVFAVAALVFIITTLSGKIEVVYGGFLVFEIL
CGIYFPGMATMRAPYIPEESRSAILNFFRVPLNLIVVVALYEDLEVKTVF
ALCACLMIIAVISQQRLMRLARYAPCEDHDIEGAEGVRKANECDEDQT*
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spliced messenger RNA

>Gchil3746.t1 ID=Gchil3746.t1|Name=Gchil3746.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1347bp|location=Sequence derived from alignment at tig00025222_pilon:1108658..1110004- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATCATTTCTCATTCTGCATATTGGTGTCAGCAACCGTCTTCTCACA
CCTTCTTACTCGTCGCTTCCAGAAGGCAGCTAGTTCCAAAGAAGATCCTG
ATACCGACGACAATTCTTTTCGAGCGTTCCAAGTTAACTATCTACTGGTG
TATTTCTTGGCAGTCGCCGCTGACTGGGTTCAAGGACCTTATGTTTATGC
GCTCTATTCCCATTATGGTTTTGCCAAGACAGAAATAGCGCGATTGTATA
TCACTGGCTTTGCTTCCTCTGCTGTGTTCGGAACATTTGTTGCTTCTGTT
GCGGACAAGTACGGTAGGAGAAATAATGCGCTGGTCTACTGTATTACATA
TACTCTTTCTTGCGCTACGAAGCATTCACCAAACTTTTGGATGCTGTTGC
TCGGGCGCATTCTAGGTGGAATTGCGTACTCCATTTTGTTCTCGGCATTC
GAAGCATGGATGGTATACGAGCACCAGCACAGAGGATTTGACTCATCACA
GCTAGGGATTACATTTGCTCGTGCGCAGTTTGGAAACGGGATCATCGCAA
TTATAGCAGGCCAAGTTGCCGGATGGTTTGCTGGCCACTATGGGAAGGTT
ATGCCTTTCGATGTGTCTATATTTGTCTTGTTGATACTTGGTGTACTTTT
GGCATACTCATGGACTGAAAACTATGGCGATGCAAAACAGAGCGTGGGGG
GTGGTTTTGCCCGAGCCTGGGTTTCTCTGTTGTCCGATGAGAAAATCCTG
CTACTCGGAGTGAGTCAAGCTGCGTTTGAGGGGGCCATGTATACTTTCAC
TTTTGTATGGACCCCTGCCTTACAAACGGCGCGGGGGCAAGTCGGAGAGA
TACCTCACGGTACGATTTTCTCTTCCTTCATGGCAGCTACAATGATCGGA
AGCAATCTCTTCGCTTTCTGGCAGCGATCTATCAAAGTAGAACTTTTGAT
GAGAAACGTGTTTGCAGTGGCGGCCCTAGTGTTCATTATTACAACTCTTT
CCGGGAAGATTGAAGTTGTATACGGAGGATTCCTAGTTTTTGAGATTCTC
TGCGGTATTTATTTTCCAGGGATGGCTACAATGAGGGCACCATACATTCC
AGAGGAAAGCAGAAGCGCGATTTTGAACTTCTTTCGGGTACCCCTTAACC
TAATCGTTGTAGTCGCTTTGTACGAAGATCTTGAAGTGAAAACGGTGTTT
GCACTTTGCGCTTGCTTGATGATTATTGCGGTGATAAGCCAACAACGCTT
GATGCGACTAGCAAGATACGCACCATGTGAGGATCACGACATCGAAGGCG
CCGAGGGCGTTAGGAAAGCCAATGAATGTGACGAAGACCAGACTTGA
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protein sequence of Gchil3746.t1

>Gchil3746.t1 ID=Gchil3746.t1|Name=Gchil3746.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=449bp
MYHFSFCILVSATVFSHLLTRRFQKAASSKEDPDTDDNSFRAFQVNYLLV
YFLAVAADWVQGPYVYALYSHYGFAKTEIARLYITGFASSAVFGTFVASV
ADKYGRRNNALVYCITYTLSCATKHSPNFWMLLLGRILGGIAYSILFSAF
EAWMVYEHQHRGFDSSQLGITFARAQFGNGIIAIIAGQVAGWFAGHYGKV
MPFDVSIFVLLILGVLLAYSWTENYGDAKQSVGGGFARAWVSLLSDEKIL
LLGVSQAAFEGAMYTFTFVWTPALQTARGQVGEIPHGTIFSSFMAATMIG
SNLFAFWQRSIKVELLMRNVFAVAALVFIITTLSGKIEVVYGGFLVFEIL
CGIYFPGMATMRAPYIPEESRSAILNFFRVPLNLIVVVALYEDLEVKTVF
ALCACLMIIAVISQQRLMRLARYAPCEDHDIEGAEGVRKANECDEDQT*
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mRNA from alignment at tig00025222_pilon:1108658..1110004-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3746.t1 ID=Gchil3746.t1|Name=Gchil3746.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1347bp|location=Sequence derived from alignment at tig00025222_pilon:1108658..1110004- (Gracilaria chilensis NLEC103_M9 male)
ATGTATCATTTCTCATTCTGCATATTGGTGTCAGCAACCGTCTTCTCACA
CCTTCTTACTCGTCGCTTCCAGAAGGCAGCTAGTTCCAAAGAAGATCCTG
ATACCGACGACAATTCTTTTCGAGCGTTCCAAGTTAACTATCTACTGGTG
TATTTCTTGGCAGTCGCCGCTGACTGGGTTCAAGGACCTTATGTTTATGC
GCTCTATTCCCATTATGGTTTTGCCAAGACAGAAATAGCGCGATTGTATA
TCACTGGCTTTGCTTCCTCTGCTGTGTTCGGAACATTTGTTGCTTCTGTT
GCGGACAAGTACGGTAGGAGAAATAATGCGCTGGTCTACTGTATTACATA
TACTCTTTCTTGCGCTACGAAGCATTCACCAAACTTTTGGATGCTGTTGC
TCGGGCGCATTCTAGGTGGAATTGCGTACTCCATTTTGTTCTCGGCATTC
GAAGCATGGATGGTATACGAGCACCAGCACAGAGGATTTGACTCATCACA
GCTAGGGATTACATTTGCTCGTGCGCAGTTTGGAAACGGGATCATCGCAA
TTATAGCAGGCCAAGTTGCCGGATGGTTTGCTGGCCACTATGGGAAGGTT
ATGCCTTTCGATGTGTCTATATTTGTCTTGTTGATACTTGGTGTACTTTT
GGCATACTCATGGACTGAAAACTATGGCGATGCAAAACAGAGCGTGGGGG
GTGGTTTTGCCCGAGCCTGGGTTTCTCTGTTGTCCGATGAGAAAATCCTG
CTACTCGGAGTGAGTCAAGCTGCGTTTGAGGGGGCCATGTATACTTTCAC
TTTTGTATGGACCCCTGCCTTACAAACGGCGCGGGGGCAAGTCGGAGAGA
TACCTCACGGTACGATTTTCTCTTCCTTCATGGCAGCTACAATGATCGGA
AGCAATCTCTTCGCTTTCTGGCAGCGATCTATCAAAGTAGAACTTTTGAT
GAGAAACGTGTTTGCAGTGGCGGCCCTAGTGTTCATTATTACAACTCTTT
CCGGGAAGATTGAAGTTGTATACGGAGGATTCCTAGTTTTTGAGATTCTC
TGCGGTATTTATTTTCCAGGGATGGCTACAATGAGGGCACCATACATTCC
AGAGGAAAGCAGAAGCGCGATTTTGAACTTCTTTCGGGTACCCCTTAACC
TAATCGTTGTAGTCGCTTTGTACGAAGATCTTGAAGTGAAAACGGTGTTT
GCACTTTGCGCTTGCTTGATGATTATTGCGGTGATAAGCCAACAACGCTT
GATGCGACTAGCAAGATACGCACCATGTGAGGATCACGACATCGAAGGCG
CCGAGGGCGTTAGGAAAGCCAATGAATGTGACGAAGACCAGACTTGA
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Coding sequence (CDS) from alignment at tig00025222_pilon:1108658..1110004-

>Gchil3746.t1 ID=Gchil3746.t1|Name=Gchil3746.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1347bp|location=Sequence derived from alignment at tig00025222_pilon:1108658..1110004- (Gracilaria chilensis NLEC103_M9 male)
ATGTATCATTTCTCATTCTGCATATTGGTGTCAGCAACCGTCTTCTCACA
CCTTCTTACTCGTCGCTTCCAGAAGGCAGCTAGTTCCAAAGAAGATCCTG
ATACCGACGACAATTCTTTTCGAGCGTTCCAAGTTAACTATCTACTGGTG
TATTTCTTGGCAGTCGCCGCTGACTGGGTTCAAGGACCTTATGTTTATGC
GCTCTATTCCCATTATGGTTTTGCCAAGACAGAAATAGCGCGATTGTATA
TCACTGGCTTTGCTTCCTCTGCTGTGTTCGGAACATTTGTTGCTTCTGTT
GCGGACAAGTACGGTAGGAGAAATAATGCGCTGGTCTACTGTATTACATA
TACTCTTTCTTGCGCTACGAAGCATTCACCAAACTTTTGGATGCTGTTGC
TCGGGCGCATTCTAGGTGGAATTGCGTACTCCATTTTGTTCTCGGCATTC
GAAGCATGGATGGTATACGAGCACCAGCACAGAGGATTTGACTCATCACA
GCTAGGGATTACATTTGCTCGTGCGCAGTTTGGAAACGGGATCATCGCAA
TTATAGCAGGCCAAGTTGCCGGATGGTTTGCTGGCCACTATGGGAAGGTT
ATGCCTTTCGATGTGTCTATATTTGTCTTGTTGATACTTGGTGTACTTTT
GGCATACTCATGGACTGAAAACTATGGCGATGCAAAACAGAGCGTGGGGG
GTGGTTTTGCCCGAGCCTGGGTTTCTCTGTTGTCCGATGAGAAAATCCTG
CTACTCGGAGTGAGTCAAGCTGCGTTTGAGGGGGCCATGTATACTTTCAC
TTTTGTATGGACCCCTGCCTTACAAACGGCGCGGGGGCAAGTCGGAGAGA
TACCTCACGGTACGATTTTCTCTTCCTTCATGGCAGCTACAATGATCGGA
AGCAATCTCTTCGCTTTCTGGCAGCGATCTATCAAAGTAGAACTTTTGAT
GAGAAACGTGTTTGCAGTGGCGGCCCTAGTGTTCATTATTACAACTCTTT
CCGGGAAGATTGAAGTTGTATACGGAGGATTCCTAGTTTTTGAGATTCTC
TGCGGTATTTATTTTCCAGGGATGGCTACAATGAGGGCACCATACATTCC
AGAGGAAAGCAGAAGCGCGATTTTGAACTTCTTTCGGGTACCCCTTAACC
TAATCGTTGTAGTCGCTTTGTACGAAGATCTTGAAGTGAAAACGGTGTTT
GCACTTTGCGCTTGCTTGATGATTATTGCGGTGATAAGCCAACAACGCTT
GATGCGACTAGCAAGATACGCACCATGTGAGGATCACGACATCGAAGGCG
CCGAGGGCGTTAGGAAAGCCAATGAATGTGACGAAGACCAGACTTGA
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