Gchil3739.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3739.t1
Unique Name	Gchil3739.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	430

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00025222_pilon	contig	tig00025222_pilon:1097983..1099272 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706140.1
PFAMs	DHQ_synthase,DHquinase_I
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00847,RC00848
KEGG ko	ko:K01735,ko:K03785
KEGG Reaction	R03083,R03084
KEGG Pathway	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG Module	M00022
Evalue	1.02e-165
EggNOG OGs	COG0169@1\|root,KOG0692@2759\|Eukaryota
EC	4.2.1.10,4.2.3.4
Description	shikimate 3-dehydrogenase (NADP ) activity
COG category	E
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3739	Gchil3739	Gracilaria chilensis NLEC103_M9 male	gene	tig00025222_pilon 1097983..1099272 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3739.t1.start1	Gchil3739.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00025222_pilon 1097983..1097985 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3739.t1.CDS1	Gchil3739.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00025222_pilon 1097983..1099272 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3739.t1.exon1	Gchil3739.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00025222_pilon 1097983..1099272 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3739.t1.stop1	Gchil3739.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00025222_pilon 1099270..1099272 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3739.t1	Gchil3739.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00025222_pilon 1097983..1099272 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00025222_pilon:1097983..1099272+
coding sequence from alignment at tig00025222_pilon:1097983..1099272+

mRNA sequence

>Gchil3739.t1 ID=Gchil3739.t1|Name=Gchil3739.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=430bp
MAPAAAGIVVKSCSDRNARPLPAAPHNVFVHNKNHYDQHKVHAWTNYYEL
PVEYTVEIHNQIFSTDNPTLATRFMPPGYKRRFVVIDQTVHALYSRAILD
YFNFHGVQCKFVIIKGEEQNKLFSAVEKIFNELCEFGLLRREPIVAIGGG
CVLDIVGFAASCYRRGVPYIRVPTTLLAIVDASVGVKCGVDWHHPTLGGL
KNRMGSFYPPIAALLDKSFINTQDRRNLINGMGEIMKLALVRSPELFSLL
EQHGARLIEERFQSDDNIPDRVIELSIQVMLEELGPNLWEYHLERCVDYG
HTFSKILEMQANPAVMHGEAVSIDGFLCILLSHRKGWISTEIRNRVFTVM
KSLQLPTWNSACTLKLLTKAVADSIEHRHGKLRLPLVKGCIGSYAFVNEC
KEEDLKAIISQALELHPGATVNDINAISM*

spliced messenger RNA

>Gchil3739.t1 ID=Gchil3739.t1|Name=Gchil3739.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1290bp|location=Sequence derived from alignment at tig00025222_pilon:1097983..1099272+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCTGCGGCCGCTGGAATCGTTGTCAAATCGTGTTCAGATAGAAA
CGCCCGTCCGTTGCCGGCAGCCCCTCATAACGTCTTCGTTCATAACAAGA
ACCATTATGACCAACACAAGGTTCACGCATGGACCAACTACTATGAGCTT
CCTGTCGAGTACACAGTCGAGATCCACAACCAAATTTTTTCCACGGACAA
CCCTACCTTGGCCACGCGTTTCATGCCTCCAGGGTACAAACGACGCTTCG
TTGTCATCGACCAAACTGTCCATGCTCTCTACTCGCGCGCCATACTAGAC
TATTTCAACTTCCATGGTGTGCAATGCAAGTTTGTCATCATCAAGGGCGA
GGAGCAAAACAAGCTCTTCTCCGCAGTAGAGAAAATCTTCAATGAACTAT
GTGAGTTCGGCCTGCTACGAAGAGAGCCCATCGTGGCCATCGGAGGCGGA
TGTGTTCTCGACATAGTTGGCTTCGCCGCAAGTTGTTATCGACGCGGTGT
GCCATACATTCGCGTGCCCACAACACTTCTGGCTATTGTCGACGCCAGTG
TGGGAGTCAAGTGCGGCGTCGACTGGCACCATCCCACTCTCGGAGGCCTC
AAGAATCGCATGGGATCGTTTTATCCCCCAATTGCGGCGCTTTTGGACAA
GTCATTCATTAACACACAGGACCGCCGAAATCTCATCAACGGAATGGGAG
AGATCATGAAGCTCGCACTGGTTCGCAGCCCCGAGCTGTTCTCATTGCTA
GAGCAGCACGGCGCACGTCTCATCGAGGAACGCTTCCAATCAGATGATAA
TATACCAGACCGTGTTATTGAACTATCCATTCAGGTCATGTTGGAGGAGT
TGGGACCCAATCTTTGGGAATATCATCTTGAACGATGTGTGGATTACGGA
CATACCTTCAGTAAGATTCTCGAAATGCAGGCAAACCCCGCTGTGATGCA
CGGCGAAGCAGTCAGCATTGATGGCTTCTTATGCATTTTACTTTCTCACC
GTAAAGGATGGATTTCTACAGAAATACGGAACCGTGTGTTCACCGTTATG
AAAAGTTTGCAATTACCTACATGGAATTCAGCTTGTACACTTAAACTACT
CACAAAGGCCGTTGCAGATAGTATCGAACATCGACATGGCAAGCTTCGTT
TGCCGCTTGTCAAGGGTTGCATTGGATCTTACGCATTTGTAAATGAATGC
AAAGAAGAGGATTTGAAAGCCATAATTTCTCAGGCTCTTGAACTGCACCC
TGGTGCCACGGTGAACGACATCAATGCCATCAGCATGTGA

protein sequence of Gchil3739.t1

>Gchil3739.t1 ID=Gchil3739.t1|Name=Gchil3739.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=430bp
MAPAAAGIVVKSCSDRNARPLPAAPHNVFVHNKNHYDQHKVHAWTNYYEL
PVEYTVEIHNQIFSTDNPTLATRFMPPGYKRRFVVIDQTVHALYSRAILD
YFNFHGVQCKFVIIKGEEQNKLFSAVEKIFNELCEFGLLRREPIVAIGGG
CVLDIVGFAASCYRRGVPYIRVPTTLLAIVDASVGVKCGVDWHHPTLGGL
KNRMGSFYPPIAALLDKSFINTQDRRNLINGMGEIMKLALVRSPELFSLL
EQHGARLIEERFQSDDNIPDRVIELSIQVMLEELGPNLWEYHLERCVDYG
HTFSKILEMQANPAVMHGEAVSIDGFLCILLSHRKGWISTEIRNRVFTVM
KSLQLPTWNSACTLKLLTKAVADSIEHRHGKLRLPLVKGCIGSYAFVNEC
KEEDLKAIISQALELHPGATVNDINAISM*

mRNA from alignment at tig00025222_pilon:1097983..1099272+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3739.t1 ID=Gchil3739.t1|Name=Gchil3739.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1290bp|location=Sequence derived from alignment at tig00025222_pilon:1097983..1099272+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCTGCGGCCGCTGGAATCGTTGTCAAATCGTGTTCAGATAGAAA
CGCCCGTCCGTTGCCGGCAGCCCCTCATAACGTCTTCGTTCATAACAAGA
ACCATTATGACCAACACAAGGTTCACGCATGGACCAACTACTATGAGCTT
CCTGTCGAGTACACAGTCGAGATCCACAACCAAATTTTTTCCACGGACAA
CCCTACCTTGGCCACGCGTTTCATGCCTCCAGGGTACAAACGACGCTTCG
TTGTCATCGACCAAACTGTCCATGCTCTCTACTCGCGCGCCATACTAGAC
TATTTCAACTTCCATGGTGTGCAATGCAAGTTTGTCATCATCAAGGGCGA
GGAGCAAAACAAGCTCTTCTCCGCAGTAGAGAAAATCTTCAATGAACTAT
GTGAGTTCGGCCTGCTACGAAGAGAGCCCATCGTGGCCATCGGAGGCGGA
TGTGTTCTCGACATAGTTGGCTTCGCCGCAAGTTGTTATCGACGCGGTGT
GCCATACATTCGCGTGCCCACAACACTTCTGGCTATTGTCGACGCCAGTG
TGGGAGTCAAGTGCGGCGTCGACTGGCACCATCCCACTCTCGGAGGCCTC
AAGAATCGCATGGGATCGTTTTATCCCCCAATTGCGGCGCTTTTGGACAA
GTCATTCATTAACACACAGGACCGCCGAAATCTCATCAACGGAATGGGAG
AGATCATGAAGCTCGCACTGGTTCGCAGCCCCGAGCTGTTCTCATTGCTA
GAGCAGCACGGCGCACGTCTCATCGAGGAACGCTTCCAATCAGATGATAA
TATACCAGACCGTGTTATTGAACTATCCATTCAGGTCATGTTGGAGGAGT
TGGGACCCAATCTTTGGGAATATCATCTTGAACGATGTGTGGATTACGGA
CATACCTTCAGTAAGATTCTCGAAATGCAGGCAAACCCCGCTGTGATGCA
CGGCGAAGCAGTCAGCATTGATGGCTTCTTATGCATTTTACTTTCTCACC
GTAAAGGATGGATTTCTACAGAAATACGGAACCGTGTGTTCACCGTTATG
AAAAGTTTGCAATTACCTACATGGAATTCAGCTTGTACACTTAAACTACT
CACAAAGGCCGTTGCAGATAGTATCGAACATCGACATGGCAAGCTTCGTT
TGCCGCTTGTCAAGGGTTGCATTGGATCTTACGCATTTGTAAATGAATGC
AAAGAAGAGGATTTGAAAGCCATAATTTCTCAGGCTCTTGAACTGCACCC
TGGTGCCACGGTGAACGACATCAATGCCATCAGCATGTGA

Coding sequence (CDS) from alignment at tig00025222_pilon:1097983..1099272+

>Gchil3739.t1 ID=Gchil3739.t1|Name=Gchil3739.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1290bp|location=Sequence derived from alignment at tig00025222_pilon:1097983..1099272+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCTGCGGCCGCTGGAATCGTTGTCAAATCGTGTTCAGATAGAAA
CGCCCGTCCGTTGCCGGCAGCCCCTCATAACGTCTTCGTTCATAACAAGA
ACCATTATGACCAACACAAGGTTCACGCATGGACCAACTACTATGAGCTT
CCTGTCGAGTACACAGTCGAGATCCACAACCAAATTTTTTCCACGGACAA
CCCTACCTTGGCCACGCGTTTCATGCCTCCAGGGTACAAACGACGCTTCG
TTGTCATCGACCAAACTGTCCATGCTCTCTACTCGCGCGCCATACTAGAC
TATTTCAACTTCCATGGTGTGCAATGCAAGTTTGTCATCATCAAGGGCGA
GGAGCAAAACAAGCTCTTCTCCGCAGTAGAGAAAATCTTCAATGAACTAT
GTGAGTTCGGCCTGCTACGAAGAGAGCCCATCGTGGCCATCGGAGGCGGA
TGTGTTCTCGACATAGTTGGCTTCGCCGCAAGTTGTTATCGACGCGGTGT
GCCATACATTCGCGTGCCCACAACACTTCTGGCTATTGTCGACGCCAGTG
TGGGAGTCAAGTGCGGCGTCGACTGGCACCATCCCACTCTCGGAGGCCTC
AAGAATCGCATGGGATCGTTTTATCCCCCAATTGCGGCGCTTTTGGACAA
GTCATTCATTAACACACAGGACCGCCGAAATCTCATCAACGGAATGGGAG
AGATCATGAAGCTCGCACTGGTTCGCAGCCCCGAGCTGTTCTCATTGCTA
GAGCAGCACGGCGCACGTCTCATCGAGGAACGCTTCCAATCAGATGATAA
TATACCAGACCGTGTTATTGAACTATCCATTCAGGTCATGTTGGAGGAGT
TGGGACCCAATCTTTGGGAATATCATCTTGAACGATGTGTGGATTACGGA
CATACCTTCAGTAAGATTCTCGAAATGCAGGCAAACCCCGCTGTGATGCA
CGGCGAAGCAGTCAGCATTGATGGCTTCTTATGCATTTTACTTTCTCACC
GTAAAGGATGGATTTCTACAGAAATACGGAACCGTGTGTTCACCGTTATG
AAAAGTTTGCAATTACCTACATGGAATTCAGCTTGTACACTTAAACTACT
CACAAAGGCCGTTGCAGATAGTATCGAACATCGACATGGCAAGCTTCGTT
TGCCGCTTGTCAAGGGTTGCATTGGATCTTACGCATTTGTAAATGAATGC
AAAGAAGAGGATTTGAAAGCCATAATTTCTCAGGCTCTTGAACTGCACCC
TGGTGCCACGGTGAACGACATCAATGCCATCAGCATGTGA