Gchil3737.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3737.t1
Unique NameGchil3737.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length508
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025222_piloncontigtig00025222_pilon:1094287..1095810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1128912.GMES_0796
PFAMsBig_2,UnbV_ASPIC,VCBS
Max annot lvl1236|Gammaproteobacteria
Evalue5.19e-45
EggNOG OGsCOG2931@1|root,COG5492@1|root,COG2931@2|Bacteria,COG5492@2|Bacteria,1R7ZV@1224|Proteobacteria,1RPUG@1236|Gammaproteobacteria,464WY@72275|Alteromonadaceae
DescriptionASPIC and UnbV
COG categoryNQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3737Gchil3737Gracilaria chilensis NLEC103_M9 malegenetig00025222_pilon 1094287..1095810 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3737.t1.stop1Gchil3737.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025222_pilon 1094287..1094289 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3737.t1.CDS1Gchil3737.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 1094287..1095810 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3737.t1.exon1Gchil3737.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 1094287..1095810 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3737.t1.start1Gchil3737.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025222_pilon 1095808..1095810 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3737.t1Gchil3737.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025222_pilon 1094287..1095810 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3737.t1 ID=Gchil3737.t1|Name=Gchil3737.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=508bp
MKPSVALAAMLALSLLHVSIAQILPRFRDFSSRAGLNTRKPRLKKYGGPT
VVDLDRDGFADLIFCHHDANYADLYFNNRDGTFTQSDWRVWRDTHGIVAG
PISPYTRAMRFVMSVGGNFGRRPTRPIMFEVDPKTRQITDITAAVGLDRQ
GGRGRTAFFMSISARKHLAFPDVVFMNAQPLPRAPDNYAYEAIGNGKYKP
RFMAGFADDKNWYGGLTDVDGDGLMEIVSYWKLKMWKVVRPYAFREISDD
VFPPDILRSGVVAVAELDYDNDGDFDLYVARTKSGDLKWVPGNDFNDYLL
ENRNGKYVDVSAKARIPRGTISRGVTVADFNNDGYIDILVTQYRAADIML
LNRGDGTFRRADGLIWRPKYIRGDNAVAVDYDNDGRVDIISSQGDQHVPK
WGGNYKVFRNVMRLTGKTRYISVRVGNAINFSATPLHATVMVVAGNLRMK
RRVGANGNAVSHAYLETLHFGLGWRRKVDRIFVRYSSGYIGVAKNVRDGR
TIVIGRI*
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spliced messenger RNA

>Gchil3737.t1 ID=Gchil3737.t1|Name=Gchil3737.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1524bp|location=Sequence derived from alignment at tig00025222_pilon:1094287..1095810- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCCCTCGGTCGCCCTGGCCGCCATGCTCGCGCTTTCCCTTCTCCA
CGTCTCTATCGCCCAGATCCTCCCGCGCTTCCGCGACTTTTCGTCCCGTG
CCGGCCTCAACACACGCAAGCCGCGTTTGAAGAAGTATGGAGGCCCCACT
GTCGTCGATCTGGATCGGGATGGCTTTGCTGATCTCATCTTTTGTCACCA
CGACGCCAACTACGCTGACCTCTACTTCAATAACCGCGACGGAACCTTCA
CCCAGTCGGACTGGCGCGTGTGGCGCGATACCCATGGCATTGTGGCCGGT
CCTATCTCCCCGTATACCCGTGCCATGCGCTTCGTCATGTCGGTGGGCGG
CAATTTCGGCAGACGCCCTACACGCCCTATCATGTTTGAAGTCGACCCGA
AAACCCGCCAGATCACCGATATCACCGCCGCCGTCGGTCTCGACAGACAG
GGCGGTCGTGGTCGCACCGCCTTTTTCATGAGCATTTCGGCCAGGAAGCA
CCTGGCTTTCCCGGACGTCGTCTTCATGAACGCCCAGCCACTCCCCAGGG
CGCCGGACAACTACGCGTATGAGGCCATTGGCAATGGAAAGTACAAACCG
CGTTTCATGGCCGGTTTCGCAGACGATAAAAACTGGTATGGAGGACTCAC
CGATGTTGACGGCGATGGCCTCATGGAGATTGTTTCGTATTGGAAACTCA
AGATGTGGAAAGTCGTCAGGCCGTACGCCTTCAGAGAGATTTCCGACGAC
GTATTTCCACCGGACATTCTACGGAGTGGAGTTGTGGCCGTCGCCGAGCT
TGATTACGACAATGACGGCGATTTTGATTTGTATGTCGCCCGAACAAAGT
CGGGAGACCTCAAATGGGTTCCCGGTAACGATTTCAATGATTACTTGCTT
GAAAACCGCAATGGTAAGTACGTCGATGTCAGCGCCAAGGCTCGCATCCC
GCGCGGAACCATATCCAGAGGCGTCACAGTGGCCGATTTCAACAATGACG
GCTATATTGACATTCTTGTCACCCAGTACCGAGCAGCTGATATTATGCTT
CTCAACAGGGGAGACGGCACCTTCCGACGCGCGGATGGCCTCATCTGGCG
ACCGAAGTATATTCGTGGCGATAATGCCGTGGCTGTTGACTATGATAATG
ACGGCAGGGTGGATATCATATCCAGTCAGGGCGATCAGCATGTTCCGAAA
TGGGGGGGGAATTATAAGGTTTTCCGAAACGTCATGAGGCTGACTGGAAA
AACAAGGTACATCTCTGTGCGAGTGGGGAATGCTATCAACTTCAGTGCTA
CGCCTTTGCATGCAACTGTTATGGTTGTGGCTGGCAATTTGAGAATGAAG
AGACGGGTTGGTGCAAATGGCAATGCCGTGTCGCATGCGTATTTGGAAAC
CCTTCACTTCGGACTAGGATGGCGGAGGAAGGTTGACCGCATTTTTGTAA
GGTACTCTAGTGGGTACATTGGGGTGGCGAAGAATGTACGCGATGGAAGA
ACAATTGTTATTGGAAGAATATGA
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protein sequence of Gchil3737.t1

>Gchil3737.t1 ID=Gchil3737.t1|Name=Gchil3737.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=508bp
MKPSVALAAMLALSLLHVSIAQILPRFRDFSSRAGLNTRKPRLKKYGGPT
VVDLDRDGFADLIFCHHDANYADLYFNNRDGTFTQSDWRVWRDTHGIVAG
PISPYTRAMRFVMSVGGNFGRRPTRPIMFEVDPKTRQITDITAAVGLDRQ
GGRGRTAFFMSISARKHLAFPDVVFMNAQPLPRAPDNYAYEAIGNGKYKP
RFMAGFADDKNWYGGLTDVDGDGLMEIVSYWKLKMWKVVRPYAFREISDD
VFPPDILRSGVVAVAELDYDNDGDFDLYVARTKSGDLKWVPGNDFNDYLL
ENRNGKYVDVSAKARIPRGTISRGVTVADFNNDGYIDILVTQYRAADIML
LNRGDGTFRRADGLIWRPKYIRGDNAVAVDYDNDGRVDIISSQGDQHVPK
WGGNYKVFRNVMRLTGKTRYISVRVGNAINFSATPLHATVMVVAGNLRMK
RRVGANGNAVSHAYLETLHFGLGWRRKVDRIFVRYSSGYIGVAKNVRDGR
TIVIGRI*
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mRNA from alignment at tig00025222_pilon:1094287..1095810-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3737.t1 ID=Gchil3737.t1|Name=Gchil3737.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1524bp|location=Sequence derived from alignment at tig00025222_pilon:1094287..1095810- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGCCCTCGGTCGCCCTGGCCGCCATGCTCGCGCTTTCCCTTCTCCA
CGTCTCTATCGCCCAGATCCTCCCGCGCTTCCGCGACTTTTCGTCCCGTG
CCGGCCTCAACACACGCAAGCCGCGTTTGAAGAAGTATGGAGGCCCCACT
GTCGTCGATCTGGATCGGGATGGCTTTGCTGATCTCATCTTTTGTCACCA
CGACGCCAACTACGCTGACCTCTACTTCAATAACCGCGACGGAACCTTCA
CCCAGTCGGACTGGCGCGTGTGGCGCGATACCCATGGCATTGTGGCCGGT
CCTATCTCCCCGTATACCCGTGCCATGCGCTTCGTCATGTCGGTGGGCGG
CAATTTCGGCAGACGCCCTACACGCCCTATCATGTTTGAAGTCGACCCGA
AAACCCGCCAGATCACCGATATCACCGCCGCCGTCGGTCTCGACAGACAG
GGCGGTCGTGGTCGCACCGCCTTTTTCATGAGCATTTCGGCCAGGAAGCA
CCTGGCTTTCCCGGACGTCGTCTTCATGAACGCCCAGCCACTCCCCAGGG
CGCCGGACAACTACGCGTATGAGGCCATTGGCAATGGAAAGTACAAACCG
CGTTTCATGGCCGGTTTCGCAGACGATAAAAACTGGTATGGAGGACTCAC
CGATGTTGACGGCGATGGCCTCATGGAGATTGTTTCGTATTGGAAACTCA
AGATGTGGAAAGTCGTCAGGCCGTACGCCTTCAGAGAGATTTCCGACGAC
GTATTTCCACCGGACATTCTACGGAGTGGAGTTGTGGCCGTCGCCGAGCT
TGATTACGACAATGACGGCGATTTTGATTTGTATGTCGCCCGAACAAAGT
CGGGAGACCTCAAATGGGTTCCCGGTAACGATTTCAATGATTACTTGCTT
GAAAACCGCAATGGTAAGTACGTCGATGTCAGCGCCAAGGCTCGCATCCC
GCGCGGAACCATATCCAGAGGCGTCACAGTGGCCGATTTCAACAATGACG
GCTATATTGACATTCTTGTCACCCAGTACCGAGCAGCTGATATTATGCTT
CTCAACAGGGGAGACGGCACCTTCCGACGCGCGGATGGCCTCATCTGGCG
ACCGAAGTATATTCGTGGCGATAATGCCGTGGCTGTTGACTATGATAATG
ACGGCAGGGTGGATATCATATCCAGTCAGGGCGATCAGCATGTTCCGAAA
TGGGGGGGGAATTATAAGGTTTTCCGAAACGTCATGAGGCTGACTGGAAA
AACAAGGTACATCTCTGTGCGAGTGGGGAATGCTATCAACTTCAGTGCTA
CGCCTTTGCATGCAACTGTTATGGTTGTGGCTGGCAATTTGAGAATGAAG
AGACGGGTTGGTGCAAATGGCAATGCCGTGTCGCATGCGTATTTGGAAAC
CCTTCACTTCGGACTAGGATGGCGGAGGAAGGTTGACCGCATTTTTGTAA
GGTACTCTAGTGGGTACATTGGGGTGGCGAAGAATGTACGCGATGGAAGA
ACAATTGTTATTGGAAGAATATGA
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Coding sequence (CDS) from alignment at tig00025222_pilon:1094287..1095810-

>Gchil3737.t1 ID=Gchil3737.t1|Name=Gchil3737.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1524bp|location=Sequence derived from alignment at tig00025222_pilon:1094287..1095810- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGCCCTCGGTCGCCCTGGCCGCCATGCTCGCGCTTTCCCTTCTCCA
CGTCTCTATCGCCCAGATCCTCCCGCGCTTCCGCGACTTTTCGTCCCGTG
CCGGCCTCAACACACGCAAGCCGCGTTTGAAGAAGTATGGAGGCCCCACT
GTCGTCGATCTGGATCGGGATGGCTTTGCTGATCTCATCTTTTGTCACCA
CGACGCCAACTACGCTGACCTCTACTTCAATAACCGCGACGGAACCTTCA
CCCAGTCGGACTGGCGCGTGTGGCGCGATACCCATGGCATTGTGGCCGGT
CCTATCTCCCCGTATACCCGTGCCATGCGCTTCGTCATGTCGGTGGGCGG
CAATTTCGGCAGACGCCCTACACGCCCTATCATGTTTGAAGTCGACCCGA
AAACCCGCCAGATCACCGATATCACCGCCGCCGTCGGTCTCGACAGACAG
GGCGGTCGTGGTCGCACCGCCTTTTTCATGAGCATTTCGGCCAGGAAGCA
CCTGGCTTTCCCGGACGTCGTCTTCATGAACGCCCAGCCACTCCCCAGGG
CGCCGGACAACTACGCGTATGAGGCCATTGGCAATGGAAAGTACAAACCG
CGTTTCATGGCCGGTTTCGCAGACGATAAAAACTGGTATGGAGGACTCAC
CGATGTTGACGGCGATGGCCTCATGGAGATTGTTTCGTATTGGAAACTCA
AGATGTGGAAAGTCGTCAGGCCGTACGCCTTCAGAGAGATTTCCGACGAC
GTATTTCCACCGGACATTCTACGGAGTGGAGTTGTGGCCGTCGCCGAGCT
TGATTACGACAATGACGGCGATTTTGATTTGTATGTCGCCCGAACAAAGT
CGGGAGACCTCAAATGGGTTCCCGGTAACGATTTCAATGATTACTTGCTT
GAAAACCGCAATGGTAAGTACGTCGATGTCAGCGCCAAGGCTCGCATCCC
GCGCGGAACCATATCCAGAGGCGTCACAGTGGCCGATTTCAACAATGACG
GCTATATTGACATTCTTGTCACCCAGTACCGAGCAGCTGATATTATGCTT
CTCAACAGGGGAGACGGCACCTTCCGACGCGCGGATGGCCTCATCTGGCG
ACCGAAGTATATTCGTGGCGATAATGCCGTGGCTGTTGACTATGATAATG
ACGGCAGGGTGGATATCATATCCAGTCAGGGCGATCAGCATGTTCCGAAA
TGGGGGGGGAATTATAAGGTTTTCCGAAACGTCATGAGGCTGACTGGAAA
AACAAGGTACATCTCTGTGCGAGTGGGGAATGCTATCAACTTCAGTGCTA
CGCCTTTGCATGCAACTGTTATGGTTGTGGCTGGCAATTTGAGAATGAAG
AGACGGGTTGGTGCAAATGGCAATGCCGTGTCGCATGCGTATTTGGAAAC
CCTTCACTTCGGACTAGGATGGCGGAGGAAGGTTGACCGCATTTTTGTAA
GGTACTCTAGTGGGTACATTGGGGTGGCGAAGAATGTACGCGATGGAAGA
ACAATTGTTATTGGAAGAATATGA
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