Gchil3735.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3735.t1
Unique NameGchil3735.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length511
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025222_piloncontigtig00025222_pilon:1085869..1087401 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705580.1
PFAMsMFS_1
Max annot lvl2759|Eukaryota
KEGG koko:K15378
KEGG TC2.A.2.4,2.A.2.6
Evalue2.77e-116
EggNOG OGsKOG0637@1|root,KOG0637@2759|Eukaryota
Descriptionsucrose transmembrane transporter activity
COG categoryS
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3735Gchil3735Gracilaria chilensis NLEC103_M9 malegenetig00025222_pilon 1085869..1087401 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3735.t1.stop1Gchil3735.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025222_pilon 1085869..1085871 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3735.t1.CDS1Gchil3735.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 1085869..1087401 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3735.t1.exon1Gchil3735.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 1085869..1087401 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3735.t1.start1Gchil3735.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025222_pilon 1087399..1087401 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3735.t1Gchil3735.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025222_pilon 1085869..1087401 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3735.t1 ID=Gchil3735.t1|Name=Gchil3735.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=511bp
MTSSDASGVVPGPRDSPVTFDSPRETEPLHRWRIILCAVAMCGVSISYSA
QVNLGTSQLLLLGLSERAVSLAWLAGPLSGLIVQPIVGHLSDRCASPFGR
RRPFLVAGALLTASALLLFANAGLVADAVGASNAALPIAIVSFFLLDFSV
QAVQGPLRALITEFVPRSQRNVGNSYIGVFTGLGNLLGSVFTAVGVADYV
PYFEHDVQAVFALAAIILLISVTISVCSTKEAPVSLREYEAVAPGSEDAV
EIGDNGDEPDPPQTPDASFLYALRHVPQPYWHVFAIQLCTWCGFFALFVY
VNAWVGKNVYLGDGTAPAASDKRRTFEEGVRLGGKGNALTAAVTLIYSLA
LPSLMRRYGSMPIYATSQIVEAAVLMAAPLIRGTPGKPPSQALKAVTVTD
IGLFGIVWGTTMGVPWTLIGDALDSKPWYRDRVGLFQMIFNASQSGPQLI
VACIAPLILALFNDDPSAVMFFGGLLALVGALLIVVLRVGKPAPPRETPK
VLLPVLNLND*
back to top

spliced messenger RNA

>Gchil3735.t1 ID=Gchil3735.t1|Name=Gchil3735.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1533bp|location=Sequence derived from alignment at tig00025222_pilon:1085869..1087401- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTCTTCCGATGCCTCCGGCGTCGTTCCGGGTCCTAGGGACTCCCC
AGTGACGTTTGACTCTCCTCGCGAAACGGAGCCGCTTCATCGATGGCGCA
TTATTCTTTGTGCCGTCGCTATGTGTGGCGTCTCAATTTCGTACTCAGCC
CAGGTCAACCTTGGCACCTCTCAACTTCTCCTACTCGGTCTCTCTGAGCG
GGCTGTGTCCCTCGCCTGGCTGGCCGGCCCTCTGTCCGGGCTTATTGTAC
AGCCGATTGTAGGCCATTTGTCCGACCGATGTGCGTCCCCGTTTGGTCGT
CGCCGCCCCTTCCTTGTCGCAGGCGCTTTGCTTACTGCCTCTGCATTACT
ACTGTTCGCGAATGCTGGTTTAGTGGCAGATGCTGTCGGCGCGTCCAACG
CAGCGCTTCCAATCGCCATTGTCTCCTTTTTTCTGCTCGACTTCTCCGTC
CAGGCAGTTCAGGGGCCTTTGAGAGCGCTTATCACTGAGTTTGTGCCACG
TAGTCAGCGAAACGTCGGAAATTCCTACATCGGTGTGTTTACTGGCCTTG
GTAATTTGCTCGGTAGCGTATTTACTGCCGTTGGTGTTGCGGATTATGTG
CCCTATTTTGAGCATGACGTACAGGCCGTGTTTGCGCTCGCAGCAATCAT
TCTACTTATAAGCGTCACAATATCAGTGTGCTCAACGAAAGAGGCCCCAG
TCTCGCTTCGCGAGTATGAAGCTGTTGCGCCTGGTTCGGAAGACGCAGTC
GAGATCGGTGACAATGGCGATGAACCGGACCCGCCACAAACACCAGACGC
CTCATTTCTGTATGCTTTACGCCATGTACCACAGCCTTATTGGCATGTTT
TCGCTATTCAACTTTGTACATGGTGTGGATTTTTTGCTCTTTTCGTGTAC
GTCAATGCTTGGGTTGGGAAAAATGTATACCTGGGAGATGGTACTGCACC
GGCGGCCAGCGACAAGAGACGTACATTTGAAGAAGGGGTTCGTCTTGGTG
GGAAGGGAAATGCGCTGACTGCTGCTGTAACTTTAATATATTCGCTTGCA
TTGCCGAGCTTGATGCGCCGTTATGGAAGTATGCCAATCTATGCCACAAG
CCAAATTGTCGAGGCTGCCGTTTTGATGGCAGCACCGCTTATTCGAGGAA
CACCTGGAAAGCCCCCGTCACAGGCGCTGAAAGCAGTCACGGTGACGGAC
ATCGGGCTGTTTGGCATTGTCTGGGGAACGACGATGGGTGTCCCGTGGAC
ACTTATTGGAGATGCTCTGGATTCGAAACCGTGGTATCGGGATCGCGTCG
GTCTCTTTCAAATGATTTTTAATGCCAGTCAAAGTGGACCGCAGCTTATT
GTGGCGTGTATCGCGCCGCTGATTCTCGCGTTGTTCAATGATGATCCCTC
TGCGGTCATGTTCTTCGGTGGTCTTTTGGCACTAGTGGGTGCATTGCTTA
TTGTTGTTCTTCGAGTTGGTAAACCTGCCCCCCCACGTGAGACTCCAAAA
GTGTTACTACCGGTCCTCAATCTAAATGATTAG
back to top

protein sequence of Gchil3735.t1

>Gchil3735.t1 ID=Gchil3735.t1|Name=Gchil3735.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=511bp
MTSSDASGVVPGPRDSPVTFDSPRETEPLHRWRIILCAVAMCGVSISYSA
QVNLGTSQLLLLGLSERAVSLAWLAGPLSGLIVQPIVGHLSDRCASPFGR
RRPFLVAGALLTASALLLFANAGLVADAVGASNAALPIAIVSFFLLDFSV
QAVQGPLRALITEFVPRSQRNVGNSYIGVFTGLGNLLGSVFTAVGVADYV
PYFEHDVQAVFALAAIILLISVTISVCSTKEAPVSLREYEAVAPGSEDAV
EIGDNGDEPDPPQTPDASFLYALRHVPQPYWHVFAIQLCTWCGFFALFVY
VNAWVGKNVYLGDGTAPAASDKRRTFEEGVRLGGKGNALTAAVTLIYSLA
LPSLMRRYGSMPIYATSQIVEAAVLMAAPLIRGTPGKPPSQALKAVTVTD
IGLFGIVWGTTMGVPWTLIGDALDSKPWYRDRVGLFQMIFNASQSGPQLI
VACIAPLILALFNDDPSAVMFFGGLLALVGALLIVVLRVGKPAPPRETPK
VLLPVLNLND*
back to top

mRNA from alignment at tig00025222_pilon:1085869..1087401-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3735.t1 ID=Gchil3735.t1|Name=Gchil3735.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1533bp|location=Sequence derived from alignment at tig00025222_pilon:1085869..1087401- (Gracilaria chilensis NLEC103_M9 male)
ATGACGTCTTCCGATGCCTCCGGCGTCGTTCCGGGTCCTAGGGACTCCCC
AGTGACGTTTGACTCTCCTCGCGAAACGGAGCCGCTTCATCGATGGCGCA
TTATTCTTTGTGCCGTCGCTATGTGTGGCGTCTCAATTTCGTACTCAGCC
CAGGTCAACCTTGGCACCTCTCAACTTCTCCTACTCGGTCTCTCTGAGCG
GGCTGTGTCCCTCGCCTGGCTGGCCGGCCCTCTGTCCGGGCTTATTGTAC
AGCCGATTGTAGGCCATTTGTCCGACCGATGTGCGTCCCCGTTTGGTCGT
CGCCGCCCCTTCCTTGTCGCAGGCGCTTTGCTTACTGCCTCTGCATTACT
ACTGTTCGCGAATGCTGGTTTAGTGGCAGATGCTGTCGGCGCGTCCAACG
CAGCGCTTCCAATCGCCATTGTCTCCTTTTTTCTGCTCGACTTCTCCGTC
CAGGCAGTTCAGGGGCCTTTGAGAGCGCTTATCACTGAGTTTGTGCCACG
TAGTCAGCGAAACGTCGGAAATTCCTACATCGGTGTGTTTACTGGCCTTG
GTAATTTGCTCGGTAGCGTATTTACTGCCGTTGGTGTTGCGGATTATGTG
CCCTATTTTGAGCATGACGTACAGGCCGTGTTTGCGCTCGCAGCAATCAT
TCTACTTATAAGCGTCACAATATCAGTGTGCTCAACGAAAGAGGCCCCAG
TCTCGCTTCGCGAGTATGAAGCTGTTGCGCCTGGTTCGGAAGACGCAGTC
GAGATCGGTGACAATGGCGATGAACCGGACCCGCCACAAACACCAGACGC
CTCATTTCTGTATGCTTTACGCCATGTACCACAGCCTTATTGGCATGTTT
TCGCTATTCAACTTTGTACATGGTGTGGATTTTTTGCTCTTTTCGTGTAC
GTCAATGCTTGGGTTGGGAAAAATGTATACCTGGGAGATGGTACTGCACC
GGCGGCCAGCGACAAGAGACGTACATTTGAAGAAGGGGTTCGTCTTGGTG
GGAAGGGAAATGCGCTGACTGCTGCTGTAACTTTAATATATTCGCTTGCA
TTGCCGAGCTTGATGCGCCGTTATGGAAGTATGCCAATCTATGCCACAAG
CCAAATTGTCGAGGCTGCCGTTTTGATGGCAGCACCGCTTATTCGAGGAA
CACCTGGAAAGCCCCCGTCACAGGCGCTGAAAGCAGTCACGGTGACGGAC
ATCGGGCTGTTTGGCATTGTCTGGGGAACGACGATGGGTGTCCCGTGGAC
ACTTATTGGAGATGCTCTGGATTCGAAACCGTGGTATCGGGATCGCGTCG
GTCTCTTTCAAATGATTTTTAATGCCAGTCAAAGTGGACCGCAGCTTATT
GTGGCGTGTATCGCGCCGCTGATTCTCGCGTTGTTCAATGATGATCCCTC
TGCGGTCATGTTCTTCGGTGGTCTTTTGGCACTAGTGGGTGCATTGCTTA
TTGTTGTTCTTCGAGTTGGTAAACCTGCCCCCCCACGTGAGACTCCAAAA
GTGTTACTACCGGTCCTCAATCTAAATGATTAG
back to top

Coding sequence (CDS) from alignment at tig00025222_pilon:1085869..1087401-

>Gchil3735.t1 ID=Gchil3735.t1|Name=Gchil3735.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1533bp|location=Sequence derived from alignment at tig00025222_pilon:1085869..1087401- (Gracilaria chilensis NLEC103_M9 male)
ATGACGTCTTCCGATGCCTCCGGCGTCGTTCCGGGTCCTAGGGACTCCCC
AGTGACGTTTGACTCTCCTCGCGAAACGGAGCCGCTTCATCGATGGCGCA
TTATTCTTTGTGCCGTCGCTATGTGTGGCGTCTCAATTTCGTACTCAGCC
CAGGTCAACCTTGGCACCTCTCAACTTCTCCTACTCGGTCTCTCTGAGCG
GGCTGTGTCCCTCGCCTGGCTGGCCGGCCCTCTGTCCGGGCTTATTGTAC
AGCCGATTGTAGGCCATTTGTCCGACCGATGTGCGTCCCCGTTTGGTCGT
CGCCGCCCCTTCCTTGTCGCAGGCGCTTTGCTTACTGCCTCTGCATTACT
ACTGTTCGCGAATGCTGGTTTAGTGGCAGATGCTGTCGGCGCGTCCAACG
CAGCGCTTCCAATCGCCATTGTCTCCTTTTTTCTGCTCGACTTCTCCGTC
CAGGCAGTTCAGGGGCCTTTGAGAGCGCTTATCACTGAGTTTGTGCCACG
TAGTCAGCGAAACGTCGGAAATTCCTACATCGGTGTGTTTACTGGCCTTG
GTAATTTGCTCGGTAGCGTATTTACTGCCGTTGGTGTTGCGGATTATGTG
CCCTATTTTGAGCATGACGTACAGGCCGTGTTTGCGCTCGCAGCAATCAT
TCTACTTATAAGCGTCACAATATCAGTGTGCTCAACGAAAGAGGCCCCAG
TCTCGCTTCGCGAGTATGAAGCTGTTGCGCCTGGTTCGGAAGACGCAGTC
GAGATCGGTGACAATGGCGATGAACCGGACCCGCCACAAACACCAGACGC
CTCATTTCTGTATGCTTTACGCCATGTACCACAGCCTTATTGGCATGTTT
TCGCTATTCAACTTTGTACATGGTGTGGATTTTTTGCTCTTTTCGTGTAC
GTCAATGCTTGGGTTGGGAAAAATGTATACCTGGGAGATGGTACTGCACC
GGCGGCCAGCGACAAGAGACGTACATTTGAAGAAGGGGTTCGTCTTGGTG
GGAAGGGAAATGCGCTGACTGCTGCTGTAACTTTAATATATTCGCTTGCA
TTGCCGAGCTTGATGCGCCGTTATGGAAGTATGCCAATCTATGCCACAAG
CCAAATTGTCGAGGCTGCCGTTTTGATGGCAGCACCGCTTATTCGAGGAA
CACCTGGAAAGCCCCCGTCACAGGCGCTGAAAGCAGTCACGGTGACGGAC
ATCGGGCTGTTTGGCATTGTCTGGGGAACGACGATGGGTGTCCCGTGGAC
ACTTATTGGAGATGCTCTGGATTCGAAACCGTGGTATCGGGATCGCGTCG
GTCTCTTTCAAATGATTTTTAATGCCAGTCAAAGTGGACCGCAGCTTATT
GTGGCGTGTATCGCGCCGCTGATTCTCGCGTTGTTCAATGATGATCCCTC
TGCGGTCATGTTCTTCGGTGGTCTTTTGGCACTAGTGGGTGCATTGCTTA
TTGTTGTTCTTCGAGTTGGTAAACCTGCCCCCCCACGTGAGACTCCAAAA
GTGTTACTACCGGTCCTCAATCTAAATGATTAG
back to top