Gchil373.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil373.t1
Unique NameGchil373.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length319
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000212_piloncontigtig00000212_pilon:652855..653811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil373Gchil373Gracilaria chilensis NLEC103_M9 malegenetig00000212_pilon 652855..653811 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil373.t1.start1Gchil373.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000212_pilon 652855..652857 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil373.t1.CDS1Gchil373.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000212_pilon 652855..653811 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil373.t1.exon1Gchil373.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000212_pilon 652855..653811 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil373.t1.stop1Gchil373.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000212_pilon 653809..653811 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil373.t1Gchil373.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000212_pilon 652855..653811 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil373.t1 ID=Gchil373.t1|Name=Gchil373.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=319bp
MRTYLRQKCNLENSAHIRRVLRPLSVRTLCTLLADAPPQLTRQFRQLVAL
LPQSLRHPHELLLAPSLRSDWQRCATQAYKLRERREAEFHLAHFVAHQLR
LPLARLRAASAVERHARELQAFQRRMRAFDAHVVQDPLLHSQHTHHNSAP
SSPAHSVSTSSSSRRHSLTDPIQQFGGTPLAAADMRLLQLPGAISAEPRK
APPPPPRASIPASAPMPAPTPGATAPLSAAAAAAAAAYASGRGTPSSFAP
PFVAPHGYPHVMPQMQQPSMLVYMPPSYAPFTYAYPLNVAAPPASHITHY
TGVPPPPPPPPPPPPPSR*
back to top

spliced messenger RNA

>Gchil373.t1 ID=Gchil373.t1|Name=Gchil373.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=957bp|location=Sequence derived from alignment at tig00000212_pilon:652855..653811+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCACCTATCTCCGCCAAAAGTGCAACCTAGAGAACAGTGCGCACAT
TCGTCGTGTGCTTCGTCCGCTGTCGGTACGCACCTTGTGCACGTTGCTTG
CGGATGCGCCTCCGCAACTCACGCGTCAATTTCGTCAGCTCGTCGCCTTG
TTACCACAGTCCTTGCGCCATCCGCACGAGCTGTTACTTGCTCCTAGCTT
GCGCTCCGACTGGCAGCGCTGCGCCACCCAGGCGTACAAATTGCGCGAAC
GTCGCGAAGCCGAGTTTCACTTGGCGCACTTTGTGGCCCATCAGCTCCGA
CTCCCACTCGCGCGACTACGCGCCGCATCTGCCGTCGAACGCCACGCACG
CGAGCTACAAGCTTTTCAACGTCGCATGCGTGCGTTTGATGCACACGTTG
TGCAAGATCCGTTGCTTCATTCGCAACATACTCACCACAACTCCGCGCCT
AGCAGCCCGGCGCACAGCGTCAGTACGTCGTCATCGTCGCGTCGACATTC
GCTCACCGACCCTATTCAACAGTTTGGCGGCACGCCGCTGGCGGCTGCTG
ACATGCGTCTGCTGCAACTGCCCGGTGCCATCTCCGCCGAGCCGCGGAAA
GCGCCGCCGCCGCCGCCCCGCGCCTCCATACCCGCGTCCGCGCCCATGCC
CGCGCCCACGCCGGGTGCGACGGCGCCGCTCTcggcggcggcggcggcgg
cggcggcAGCTTATGCATCGGGGCGGGGAACGCCTTCTTCGTTTGCACCA
CCGTTTGTTGCACCGCACGGCTACCCTCACGTGATGCCGCAGATGCAGCA
GCCTTCCATGCTGGTGTACATGCCTCCGAGTTACGCGCCGTTCACGTACG
CGTACCCGCTCAACGTGGCCGCCCCGCCTGCGTCGCACATCACGCACTAC
ACCGGCGTCccgccgccgccgccgccgccgccgccgccgccgccgccgTC
GCGGTGA
back to top

protein sequence of Gchil373.t1

>Gchil373.t1 ID=Gchil373.t1|Name=Gchil373.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=319bp
MRTYLRQKCNLENSAHIRRVLRPLSVRTLCTLLADAPPQLTRQFRQLVAL
LPQSLRHPHELLLAPSLRSDWQRCATQAYKLRERREAEFHLAHFVAHQLR
LPLARLRAASAVERHARELQAFQRRMRAFDAHVVQDPLLHSQHTHHNSAP
SSPAHSVSTSSSSRRHSLTDPIQQFGGTPLAAADMRLLQLPGAISAEPRK
APPPPPRASIPASAPMPAPTPGATAPLSAAAAAAAAAYASGRGTPSSFAP
PFVAPHGYPHVMPQMQQPSMLVYMPPSYAPFTYAYPLNVAAPPASHITHY
TGVPPPPPPPPPPPPPSR*
back to top

mRNA from alignment at tig00000212_pilon:652855..653811+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil373.t1 ID=Gchil373.t1|Name=Gchil373.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=957bp|location=Sequence derived from alignment at tig00000212_pilon:652855..653811+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGCACCTATCTCCGCCAAAAGTGCAACCTAGAGAACAGTGCGCACAT
TCGTCGTGTGCTTCGTCCGCTGTCGGTACGCACCTTGTGCACGTTGCTTG
CGGATGCGCCTCCGCAACTCACGCGTCAATTTCGTCAGCTCGTCGCCTTG
TTACCACAGTCCTTGCGCCATCCGCACGAGCTGTTACTTGCTCCTAGCTT
GCGCTCCGACTGGCAGCGCTGCGCCACCCAGGCGTACAAATTGCGCGAAC
GTCGCGAAGCCGAGTTTCACTTGGCGCACTTTGTGGCCCATCAGCTCCGA
CTCCCACTCGCGCGACTACGCGCCGCATCTGCCGTCGAACGCCACGCACG
CGAGCTACAAGCTTTTCAACGTCGCATGCGTGCGTTTGATGCACACGTTG
TGCAAGATCCGTTGCTTCATTCGCAACATACTCACCACAACTCCGCGCCT
AGCAGCCCGGCGCACAGCGTCAGTACGTCGTCATCGTCGCGTCGACATTC
GCTCACCGACCCTATTCAACAGTTTGGCGGCACGCCGCTGGCGGCTGCTG
ACATGCGTCTGCTGCAACTGCCCGGTGCCATCTCCGCCGAGCCGCGGAAA
GCGCCGCCGCCGCCGCCCCGCGCCTCCATACCCGCGTCCGCGCCCATGCC
CGCGCCCACGCCGGGTGCGACGGCGCCGCTCTcggcggcggcggcggcgg
cggcggcAGCTTATGCATCGGGGCGGGGAACGCCTTCTTCGTTTGCACCA
CCGTTTGTTGCACCGCACGGCTACCCTCACGTGATGCCGCAGATGCAGCA
GCCTTCCATGCTGGTGTACATGCCTCCGAGTTACGCGCCGTTCACGTACG
CGTACCCGCTCAACGTGGCCGCCCCGCCTGCGTCGCACATCACGCACTAC
ACCGGCGTCccgccgccgccgccgccgccgccgccgccgccgccgccgTC
GCGGTGA
back to top

Coding sequence (CDS) from alignment at tig00000212_pilon:652855..653811+

>Gchil373.t1 ID=Gchil373.t1|Name=Gchil373.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=957bp|location=Sequence derived from alignment at tig00000212_pilon:652855..653811+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGCACCTATCTCCGCCAAAAGTGCAACCTAGAGAACAGTGCGCACAT
TCGTCGTGTGCTTCGTCCGCTGTCGGTACGCACCTTGTGCACGTTGCTTG
CGGATGCGCCTCCGCAACTCACGCGTCAATTTCGTCAGCTCGTCGCCTTG
TTACCACAGTCCTTGCGCCATCCGCACGAGCTGTTACTTGCTCCTAGCTT
GCGCTCCGACTGGCAGCGCTGCGCCACCCAGGCGTACAAATTGCGCGAAC
GTCGCGAAGCCGAGTTTCACTTGGCGCACTTTGTGGCCCATCAGCTCCGA
CTCCCACTCGCGCGACTACGCGCCGCATCTGCCGTCGAACGCCACGCACG
CGAGCTACAAGCTTTTCAACGTCGCATGCGTGCGTTTGATGCACACGTTG
TGCAAGATCCGTTGCTTCATTCGCAACATACTCACCACAACTCCGCGCCT
AGCAGCCCGGCGCACAGCGTCAGTACGTCGTCATCGTCGCGTCGACATTC
GCTCACCGACCCTATTCAACAGTTTGGCGGCACGCCGCTGGCGGCTGCTG
ACATGCGTCTGCTGCAACTGCCCGGTGCCATCTCCGCCGAGCCGCGGAAA
GCGCCGCCGCCGCCGCCCCGCGCCTCCATACCCGCGTCCGCGCCCATGCC
CGCGCCCACGCCGGGTGCGACGGCGCCGCTCTcggcggcggcggcggcgg
cggcggcAGCTTATGCATCGGGGCGGGGAACGCCTTCTTCGTTTGCACCA
CCGTTTGTTGCACCGCACGGCTACCCTCACGTGATGCCGCAGATGCAGCA
GCCTTCCATGCTGGTGTACATGCCTCCGAGTTACGCGCCGTTCACGTACG
CGTACCCGCTCAACGTGGCCGCCCCGCCTGCGTCGCACATCACGCACTAC
ACCGGCGTCccgccgccgccgccgccgccgccgccgccgccgccgccgTC
GCGGTGA
back to top