Gchil3723.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3723.t1
Unique NameGchil3723.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length465
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025222_piloncontigtig00025222_pilon:962290..964431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog79684.XP_005355848.1
Preferred nameCHST9
PFAMsSulfotransfer_2
Max annot lvl33208|Metazoa
KEGG rclassRC00007,RC00231
KEGG koko:K01017,ko:K09672,ko:K09673
KEGG ReactionR02180
KEGG Pathwayko00513,ko00532,ko01100,map00513,map00532,map01100
GOsGO:0000139,GO:0001537,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006022,GO:0006023,GO:0006024,GO:0006029,GO:0006082,GO:0006790,GO:0006807,GO:0008146,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0010817,GO:0012505,GO:0016020,GO:0016021,GO:0016740,GO:0016782,GO:0019538,GO:0030166,GO:0030203,GO:0030204,GO:0030206,GO:0031090,GO:0031224,GO:0031984,GO:0034481,GO:0034645,GO:0042445,GO:0042446,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0047756,GO:0050650,GO:0050654,GO:0065007,GO:0065008,GO:0071704,GO:0098588,GO:0098791,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903510
Evalue1.03e-10
EggNOG OGsKOG4651@1|root,KOG4651@2759|Eukaryota,39U7A@33154|Opisthokonta,3BIUW@33208|Metazoa,3D0FI@33213|Bilateria,483NX@7711|Chordata,48XX5@7742|Vertebrata,3J80W@40674|Mammalia,35MB6@314146|Euarchontoglires,4PY1F@9989|Rodentia
EC2.8.2.5
DescriptionSulfotransferase family
COG categoryG
BRITEko00000,ko00001,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3723Gchil3723Gracilaria chilensis NLEC103_M9 malegenetig00025222_pilon 962290..964431 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3723.t1Gchil3723.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025222_pilon 962290..964431 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3723.t1.stop1Gchil3723.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025222_pilon 962290..962292 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3723.t1.CDS1Gchil3723.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 962290..963413 -
Gchil3723.t1.CDS2Gchil3723.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 964161..964431 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3723.t1.exon1Gchil3723.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 962290..963413 -
Gchil3723.t1.exon2Gchil3723.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 964161..964431 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3723.t1.intron1Gchil3723.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00025222_pilon 963414..964160 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3723.t1.start1Gchil3723.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025222_pilon 964429..964431 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3723.t1 ID=Gchil3723.t1|Name=Gchil3723.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=465bp
MSTASNKMTYVIGAVLLVLCTAVVTAHVTSNEYRFGAARVMNVGREANGV
RLYNEYAHLKATGAGVVDEKMLEVVRGMVQDICNSITYTASPAAMRAPVA
FPTRVALLLAPFAGLLLLLLLLWRAPLSCSASSCSSSSSPRRGAFSRAAA
RVPQLSALGAGTGGEAVRRRLRAACALCARDAAVVDVARLRSYGPAYSSI
VVSHALKVVYVPVFKAATTATMWQMAYLERNARVLAAARSQLDVALHDMA
HPAWRRHAIHRWPSHRIRAVLRSPAYLKFGFVRNPYHRLVSAYVDKIHRP
AVHSPEYQAQMYSLFGHDLAARAAANRSKPSFQHFVATVSVVLSQPRAGS
AHQPLPFEDNRSRRDLHWRPQVELLHPDIIPFDFIGTFDNLHHDRRLVLQ
WMYQHTTRRIPSHLLEKRHATNPAHKQHLYKLIRHNHSLRQRIIQTYKQD
FETFNFSTLPPSSE*
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spliced messenger RNA

>Gchil3723.t1 ID=Gchil3723.t1|Name=Gchil3723.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1395bp|location=Sequence derived from alignment at tig00025222_pilon:962290..964431- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGACCGCGTCAAACAAAATGACCTACGTGATCGGCGCCGTTCTTCT
GGTGTTGTGCACCGCTGTAGTTACTGCGCATGTAACTAGCAATGAGTACA
GGTTCGGCGCTGCTCGTGTGATGAACGTTGGACGTGAAGCTAATGGCGTT
CGTTTGTACAATGAATATGCACATCTGAAAGCAACTGGTGCTGGTGTCGT
AGATGAAAAGATGCTCGAAGTTGTCCGTGGAATGGTGCAAGATATTTGTA
ATTCCATAACGTACACCGCTTCGCCCGCCGCCATGCGAGCGCCAGTGGCG
TTCCCGACGCGCGTTGCGCTGCTGCTCGCCCCCTTTGCTGGGCTGCTGCT
GCTGCTGCTGCTGCTTTGGCGCGCGCCGCTGTCGTGCTCAGCGTCAAGTT
GTTCGTCGTCCTCGTCGCCGCGGCGCGGCGCCTTCTCGCGCGCGGCTGCG
CGCGTGCCGCAGCTGTCGGCGCTGGGCGCAGGCACGGGCGGCGAGGCGGT
GAGGCGGCGACTGCGCGCGGCGTGCGCGCTGTGCGCACGCGACGCGGCGG
TGGTGGACGTGGCGCGGCTGCGGTCGTACGGGCCGGCGTACTCGTCCATC
GTCGTGTCGCACGCGCTCAAGGTGGTGTACGTGCCGGTGTTCAAGGCGGC
CACCACGGCCACCATGTGGCAGATGGCGTACCTGGAGCGCAACGCGCGCG
TGCTCGCCGCCGCGCGCTCCCAGCTGGACGTGGCGCTGCACGACATGGCG
CACCCCGCGTGGCGCCGCCACGCCATCCACCGCTGGCCGTCGCACCGCAT
CCGCGCCGTGCTGCGCAGCCCCGCCTACCTCAAGTTCGGCTTCGTCCGCA
ACCCCTACCACCGCCTTGTGTCCGCCTACGTCGACAAGATTCACCGCCCC
GCCGTCCATTCGCCCGAGTATCAGGCGCAAATGTACAGCCTCTTCGGCCA
CGACCTCGCCGCGAGGGCCGCGGCCAACCGCTCCAAGCCCTCCTTCCAGC
ACTTCGTCGCAACGGTGTCGGTCGTGCTCAGCCAGCCGCGCGCCGGCTCC
GCCCATCAACCCCTTCCCTTCGAGGACAACCGCAGCCGGCGCGATCTTCA
CTGGCGCCCGCAGGTCGAGCTGCTGCACCCCGATATCATCCCTTTCGACT
TCATCGGCACCTTTGACAACCTGCATCACGACAGGCGCCTTGTACTGCAA
TGGATGTATCAGCACACCACGCGCCGCATCCCATCCCACCTACTTGAGAA
GCGCCACGCAACAAACCCTGCCCACAAGCAGCATCTGTACAAACTCATTC
GCCACAATCACTCCTTACGACAACGCATCATTCAAACGTACAAGCAGGAC
TTTGAAACATTCAACTTCTCCACTCTTCCTCCTTCGTCCGAGTGA
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protein sequence of Gchil3723.t1

>Gchil3723.t1 ID=Gchil3723.t1|Name=Gchil3723.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=465bp
MSTASNKMTYVIGAVLLVLCTAVVTAHVTSNEYRFGAARVMNVGREANGV
RLYNEYAHLKATGAGVVDEKMLEVVRGMVQDICNSITYTASPAAMRAPVA
FPTRVALLLAPFAGLLLLLLLLWRAPLSCSASSCSSSSSPRRGAFSRAAA
RVPQLSALGAGTGGEAVRRRLRAACALCARDAAVVDVARLRSYGPAYSSI
VVSHALKVVYVPVFKAATTATMWQMAYLERNARVLAAARSQLDVALHDMA
HPAWRRHAIHRWPSHRIRAVLRSPAYLKFGFVRNPYHRLVSAYVDKIHRP
AVHSPEYQAQMYSLFGHDLAARAAANRSKPSFQHFVATVSVVLSQPRAGS
AHQPLPFEDNRSRRDLHWRPQVELLHPDIIPFDFIGTFDNLHHDRRLVLQ
WMYQHTTRRIPSHLLEKRHATNPAHKQHLYKLIRHNHSLRQRIIQTYKQD
FETFNFSTLPPSSE*
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mRNA from alignment at tig00025222_pilon:962290..964431-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3723.t1 ID=Gchil3723.t1|Name=Gchil3723.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2142bp|location=Sequence derived from alignment at tig00025222_pilon:962290..964431- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGACCGCGTCAAACAAAATGACCTACGTGATCGGCGCCGTTCTTCT
GGTGTTGTGCACCGCTGTAGTTACTGCGCATGTAACTAGCAATGAGTACA
GGTTCGGCGCTGCTCGTGTGATGAACGTTGGACGTGAAGCTAATGGCGTT
CGTTTGTACAATGAATATGCACATCTGAAAGCAACTGGTGCTGGTGTCGT
AGATGAAAAGATGCTCGAAGTTGTCCGTGGAATGGTGCAAGATATTTGTA
ATTCCATAACGTACACCGCTTGTAAGTCTTATAGTGCCCGTGAGACAGAC
TGGTGTAAGATATGCGTGGCGTACAACTAGCTTTCCCAATTGAGACTTTC
AATTATGGTTGCCATATCTAAATCGCAAGCCCGGTGCGCTAGCGGCAGAT
CTCTGCACGATTCTAGCAAAATGCGATAGAAGGTCTTTGGAGAGAATAGT
TCGAATGAGTTTGTTCCTCTTGAATCCAAGTAAAGCATCTGTTCGACTGA
TGATTGTTTGATCACTGCGTATGTGACAAGCGCGCAATCCCACACCACAT
GACTAAACAGCACGCGTTTCGAAGCAGAGGCCAAATGCGGCTCCGCGAGC
AGTTAACTGCCAGCCGTTGTGGTAGCTCTCAGCACGTCGTGCTTCGCGAT
CAAAGCCGTTGGCAGCGGAGCACTGCGTACCGTTGGGGAAGAACATCACC
GAAACGGGAGCGCATTGGCGTGGGGCGACACGATCTACAGGAATAGTGCT
GTGGACGTCTCCGCAGGCCTTATGACTAGCTTGCGACAACAACAGTGTCG
CGGGTGCCAGCGGCTTTCCGATCTGCGCGCGCGCGGCGGGAAGGCGGCCG
CTTCCTTCTGCACTCGGGCGCCGATGCGTCGCGCGCGCACCGCGCAGCAA
TCGGCGCTCGCCGCAATGGCACCGCTGCGCTCAGCGCGCGCGCCACAGCG
CTGAAGAAGACGGCGCGCGCGGTGGGAAAGAGACTTCGTCGCGCCGCGAC
GTGCCACGCACCGCTCAGCGCCCGCCGCCATGCGAGCGCCAGTGGCGTTC
CCGACGCGCGTTGCGCTGCTGCTCGCCCCCTTTGCTGGGCTGCTGCTGCT
GCTGCTGCTGCTTTGGCGCGCGCCGCTGTCGTGCTCAGCGTCAAGTTGTT
CGTCGTCCTCGTCGCCGCGGCGCGGCGCCTTCTCGCGCGCGGCTGCGCGC
GTGCCGCAGCTGTCGGCGCTGGGCGCAGGCACGGGCGGCGAGGCGGTGAG
GCGGCGACTGCGCGCGGCGTGCGCGCTGTGCGCACGCGACGCGGCGGTGG
TGGACGTGGCGCGGCTGCGGTCGTACGGGCCGGCGTACTCGTCCATCGTC
GTGTCGCACGCGCTCAAGGTGGTGTACGTGCCGGTGTTCAAGGCGGCCAC
CACGGCCACCATGTGGCAGATGGCGTACCTGGAGCGCAACGCGCGCGTGC
TCGCCGCCGCGCGCTCCCAGCTGGACGTGGCGCTGCACGACATGGCGCAC
CCCGCGTGGCGCCGCCACGCCATCCACCGCTGGCCGTCGCACCGCATCCG
CGCCGTGCTGCGCAGCCCCGCCTACCTCAAGTTCGGCTTCGTCCGCAACC
CCTACCACCGCCTTGTGTCCGCCTACGTCGACAAGATTCACCGCCCCGCC
GTCCATTCGCCCGAGTATCAGGCGCAAATGTACAGCCTCTTCGGCCACGA
CCTCGCCGCGAGGGCCGCGGCCAACCGCTCCAAGCCCTCCTTCCAGCACT
TCGTCGCAACGGTGTCGGTCGTGCTCAGCCAGCCGCGCGCCGGCTCCGCC
CATCAACCCCTTCCCTTCGAGGACAACCGCAGCCGGCGCGATCTTCACTG
GCGCCCGCAGGTCGAGCTGCTGCACCCCGATATCATCCCTTTCGACTTCA
TCGGCACCTTTGACAACCTGCATCACGACAGGCGCCTTGTACTGCAATGG
ATGTATCAGCACACCACGCGCCGCATCCCATCCCACCTACTTGAGAAGCG
CCACGCAACAAACCCTGCCCACAAGCAGCATCTGTACAAACTCATTCGCC
ACAATCACTCCTTACGACAACGCATCATTCAAACGTACAAGCAGGACTTT
GAAACATTCAACTTCTCCACTCTTCCTCCTTCGTCCGAGTGA
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Coding sequence (CDS) from alignment at tig00025222_pilon:962290..964431-

>Gchil3723.t1 ID=Gchil3723.t1|Name=Gchil3723.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1395bp|location=Sequence derived from alignment at tig00025222_pilon:962290..964431- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGACCGCGTCAAACAAAATGACCTACGTGATCGGCGCCGTTCTTCT
GGTGTTGTGCACCGCTGTAGTTACTGCGCATGTAACTAGCAATGAGTACA
GGTTCGGCGCTGCTCGTGTGATGAACGTTGGACGTGAAGCTAATGGCGTT
CGTTTGTACAATGAATATGCACATCTGAAAGCAACTGGTGCTGGTGTCGT
AGATGAAAAGATGCTCGAAGTTGTCCGTGGAATGGTGCAAGATATTTGTA
ATTCCATAACGTACACCGCTTCGCCCGCCGCCATGCGAGCGCCAGTGGCG
TTCCCGACGCGCGTTGCGCTGCTGCTCGCCCCCTTTGCTGGGCTGCTGCT
GCTGCTGCTGCTGCTTTGGCGCGCGCCGCTGTCGTGCTCAGCGTCAAGTT
GTTCGTCGTCCTCGTCGCCGCGGCGCGGCGCCTTCTCGCGCGCGGCTGCG
CGCGTGCCGCAGCTGTCGGCGCTGGGCGCAGGCACGGGCGGCGAGGCGGT
GAGGCGGCGACTGCGCGCGGCGTGCGCGCTGTGCGCACGCGACGCGGCGG
TGGTGGACGTGGCGCGGCTGCGGTCGTACGGGCCGGCGTACTCGTCCATC
GTCGTGTCGCACGCGCTCAAGGTGGTGTACGTGCCGGTGTTCAAGGCGGC
CACCACGGCCACCATGTGGCAGATGGCGTACCTGGAGCGCAACGCGCGCG
TGCTCGCCGCCGCGCGCTCCCAGCTGGACGTGGCGCTGCACGACATGGCG
CACCCCGCGTGGCGCCGCCACGCCATCCACCGCTGGCCGTCGCACCGCAT
CCGCGCCGTGCTGCGCAGCCCCGCCTACCTCAAGTTCGGCTTCGTCCGCA
ACCCCTACCACCGCCTTGTGTCCGCCTACGTCGACAAGATTCACCGCCCC
GCCGTCCATTCGCCCGAGTATCAGGCGCAAATGTACAGCCTCTTCGGCCA
CGACCTCGCCGCGAGGGCCGCGGCCAACCGCTCCAAGCCCTCCTTCCAGC
ACTTCGTCGCAACGGTGTCGGTCGTGCTCAGCCAGCCGCGCGCCGGCTCC
GCCCATCAACCCCTTCCCTTCGAGGACAACCGCAGCCGGCGCGATCTTCA
CTGGCGCCCGCAGGTCGAGCTGCTGCACCCCGATATCATCCCTTTCGACT
TCATCGGCACCTTTGACAACCTGCATCACGACAGGCGCCTTGTACTGCAA
TGGATGTATCAGCACACCACGCGCCGCATCCCATCCCACCTACTTGAGAA
GCGCCACGCAACAAACCCTGCCCACAAGCAGCATCTGTACAAACTCATTC
GCCACAATCACTCCTTACGACAACGCATCATTCAAACGTACAAGCAGGAC
TTTGAAACATTCAACTTCTCCACTCTTCCTCCTTCGTCCGAGTGA
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