Gchil3722.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3722.t1
Unique NameGchil3722.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length409
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025222_piloncontigtig00025222_pilon:957177..958403 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ26062
PFAMsPRK
Max annot lvl35493|Streptophyta
KEGG rclassRC00002,RC00017
KEGG koko:K15918
KEGG ReactionR01514
KEGG Pathwayko00260,ko00561,ko00630,ko01100,ko01110,ko01130,ko01200,map00260,map00561,map00630,map01100,map01110,map01130,map01200
KEGG ModuleM00532
GOsGO:0003674,GO:0003824,GO:0004849,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006213,GO:0006220,GO:0006221,GO:0006222,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008655,GO:0008887,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009173,GO:0009174,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009853,GO:0009941,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019693,GO:0031967,GO:0031975,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0043094,GO:0043097,GO:0043174,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046049,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
Evalue1.36e-75
EggNOG OGsCOG4240@1|root,KOG2878@2759|Eukaryota,37NTW@33090|Viridiplantae,3GAT4@35493|Streptophyta
EC2.7.1.31
DescriptionD-glycerate 3-kinase
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3722Gchil3722Gracilaria chilensis NLEC103_M9 malegenetig00025222_pilon 957177..958403 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3722.t1.stop1Gchil3722.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025222_pilon 957177..957179 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3722.t1.CDS1Gchil3722.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 957177..958403 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3722.t1.exon1Gchil3722.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 957177..958403 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3722.t1.start1Gchil3722.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025222_pilon 958401..958403 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3722.t1Gchil3722.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025222_pilon 957177..958403 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3722.t1 ID=Gchil3722.t1|Name=Gchil3722.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=409bp
MNAFVSLPNVVSNGASTGLRPLRSALPPNSFMRPTSFVTPLRVRALPLSQ
HAPTMVLDKSQSLSSHSVTDLRRERLADLITSGPVFKSAALSISDISIEE
GCSTDARQTCLDDWLDTGAVLEEALGRQANDIRVYQYYLPVYFWILRELD
RHNEFMANAGSRPRPFILGFSCPQGGGKTTMTTFMETLLRKAGRSVQIAS
LDDFYLTNAQQREVAAKHPGNRLMQYRGMPGTHDLELVNTTLDDLRRGQD
VSIPKYDKTAFNGRGDRAPKEQWKHISDSTDVVLVEGWCLGFEPVPTDQV
VDADLAVVNEALHEFVAMYKRFDGLFIIEISNMEWVYDWRLQAERGTRAS
GRPGLTDEQVIDFVSRFMPAYKQYSQSLYNRSEPLFPNHELHIEIDQSRR
PVHRKRDC*
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spliced messenger RNA

>Gchil3722.t1 ID=Gchil3722.t1|Name=Gchil3722.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1227bp|location=Sequence derived from alignment at tig00025222_pilon:957177..958403- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGCCTTCGTCTCCCTCCCCAACGTCGTGTCCAATGGAGCGTCCAC
CGGCTTGCGTCCTTTAAGAAGCGCATTGCCACCCAACTCATTTATGCGTC
CCACTTCTTTCGTCACACCGCTTCGTGTCCGCGCCCTCCCTCTATCTCAA
CATGCGCCAACCATGGTGCTTGACAAGTCCCAGTCACTTTCTTCGCATTC
AGTGACAGACCTTCGCCGAGAGCGCCTAGCCGATCTAATCACATCTGGGC
CCGTGTTCAAATCCGCCGCTCTCTCCATCTCAGACATTTCCATCGAGGAA
GGATGCTCTACCGATGCCCGCCAAACGTGTCTTGACGATTGGTTGGATAC
GGGCGCCGTGCTGGAGGAGGCATTGGGGCGTCAGGCCAATGATATTCGTG
TGTATCAGTACTACCTCCCCGTGTACTTTTGGATCCTCCGTGAACTTGAC
CGTCACAACGAATTCATGGCAAACGCTGGTTCTCGTCCACGTCCGTTTAT
TTTGGGCTTCTCTTGTCCACAGGGTGGTGGAAAGACAACCATGACTACCT
TCATGGAAACTTTGCTGCGAAAGGCAGGGAGAAGCGTTCAGATTGCTAGT
CTGGATGACTTTTACCTCACCAATGCGCAGCAAAGAGAGGTTGCTGCCAA
GCATCCTGGTAACAGACTCATGCAATATCGTGGCATGCCGGGAACTCATG
ATCTTGAACTTGTCAACACCACCTTGGATGACCTCCGTCGCGGACAGGAT
GTGAGCATCCCCAAGTACGACAAGACAGCCTTCAACGGTCGTGGCGATCG
TGCTCCCAAGGAGCAGTGGAAGCACATCTCCGACTCAACGGACGTGGTAC
TAGTGGAGGGGTGGTGTCTCGGGTTCGAACCAGTTCCCACCGACCAGGTT
GTTGACGCGGACCTGGCCGTGGTCAATGAAGCTCTTCATGAGTTCGTTGC
CATGTACAAGCGTTTTGATGGGTTGTTCATAATTGAGATCAGTAACATGG
AGTGGGTGTACGACTGGCGTCTTCAGGCAGAACGTGGCACGCGTGCTTCA
GGCCGCCCTGGCCTGACAGATGAGCAGGTAATTGACTTTGTGAGCCGCTT
TATGCCAGCGTACAAGCAATATTCCCAAAGCTTGTACAACAGAAGTGAGC
CGTTGTTCCCGAACCATGAGCTGCATATTGAAATCGATCAGTCACGGAGA
CCCGTTCATCGCAAGAGGGATTGTTAG
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protein sequence of Gchil3722.t1

>Gchil3722.t1 ID=Gchil3722.t1|Name=Gchil3722.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=409bp
MNAFVSLPNVVSNGASTGLRPLRSALPPNSFMRPTSFVTPLRVRALPLSQ
HAPTMVLDKSQSLSSHSVTDLRRERLADLITSGPVFKSAALSISDISIEE
GCSTDARQTCLDDWLDTGAVLEEALGRQANDIRVYQYYLPVYFWILRELD
RHNEFMANAGSRPRPFILGFSCPQGGGKTTMTTFMETLLRKAGRSVQIAS
LDDFYLTNAQQREVAAKHPGNRLMQYRGMPGTHDLELVNTTLDDLRRGQD
VSIPKYDKTAFNGRGDRAPKEQWKHISDSTDVVLVEGWCLGFEPVPTDQV
VDADLAVVNEALHEFVAMYKRFDGLFIIEISNMEWVYDWRLQAERGTRAS
GRPGLTDEQVIDFVSRFMPAYKQYSQSLYNRSEPLFPNHELHIEIDQSRR
PVHRKRDC*
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mRNA from alignment at tig00025222_pilon:957177..958403-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3722.t1 ID=Gchil3722.t1|Name=Gchil3722.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1227bp|location=Sequence derived from alignment at tig00025222_pilon:957177..958403- (Gracilaria chilensis NLEC103_M9 male)
ATGAACGCCTTCGTCTCCCTCCCCAACGTCGTGTCCAATGGAGCGTCCAC
CGGCTTGCGTCCTTTAAGAAGCGCATTGCCACCCAACTCATTTATGCGTC
CCACTTCTTTCGTCACACCGCTTCGTGTCCGCGCCCTCCCTCTATCTCAA
CATGCGCCAACCATGGTGCTTGACAAGTCCCAGTCACTTTCTTCGCATTC
AGTGACAGACCTTCGCCGAGAGCGCCTAGCCGATCTAATCACATCTGGGC
CCGTGTTCAAATCCGCCGCTCTCTCCATCTCAGACATTTCCATCGAGGAA
GGATGCTCTACCGATGCCCGCCAAACGTGTCTTGACGATTGGTTGGATAC
GGGCGCCGTGCTGGAGGAGGCATTGGGGCGTCAGGCCAATGATATTCGTG
TGTATCAGTACTACCTCCCCGTGTACTTTTGGATCCTCCGTGAACTTGAC
CGTCACAACGAATTCATGGCAAACGCTGGTTCTCGTCCACGTCCGTTTAT
TTTGGGCTTCTCTTGTCCACAGGGTGGTGGAAAGACAACCATGACTACCT
TCATGGAAACTTTGCTGCGAAAGGCAGGGAGAAGCGTTCAGATTGCTAGT
CTGGATGACTTTTACCTCACCAATGCGCAGCAAAGAGAGGTTGCTGCCAA
GCATCCTGGTAACAGACTCATGCAATATCGTGGCATGCCGGGAACTCATG
ATCTTGAACTTGTCAACACCACCTTGGATGACCTCCGTCGCGGACAGGAT
GTGAGCATCCCCAAGTACGACAAGACAGCCTTCAACGGTCGTGGCGATCG
TGCTCCCAAGGAGCAGTGGAAGCACATCTCCGACTCAACGGACGTGGTAC
TAGTGGAGGGGTGGTGTCTCGGGTTCGAACCAGTTCCCACCGACCAGGTT
GTTGACGCGGACCTGGCCGTGGTCAATGAAGCTCTTCATGAGTTCGTTGC
CATGTACAAGCGTTTTGATGGGTTGTTCATAATTGAGATCAGTAACATGG
AGTGGGTGTACGACTGGCGTCTTCAGGCAGAACGTGGCACGCGTGCTTCA
GGCCGCCCTGGCCTGACAGATGAGCAGGTAATTGACTTTGTGAGCCGCTT
TATGCCAGCGTACAAGCAATATTCCCAAAGCTTGTACAACAGAAGTGAGC
CGTTGTTCCCGAACCATGAGCTGCATATTGAAATCGATCAGTCACGGAGA
CCCGTTCATCGCAAGAGGGATTGTTAG
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Coding sequence (CDS) from alignment at tig00025222_pilon:957177..958403-

>Gchil3722.t1 ID=Gchil3722.t1|Name=Gchil3722.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1227bp|location=Sequence derived from alignment at tig00025222_pilon:957177..958403- (Gracilaria chilensis NLEC103_M9 male)
ATGAACGCCTTCGTCTCCCTCCCCAACGTCGTGTCCAATGGAGCGTCCAC
CGGCTTGCGTCCTTTAAGAAGCGCATTGCCACCCAACTCATTTATGCGTC
CCACTTCTTTCGTCACACCGCTTCGTGTCCGCGCCCTCCCTCTATCTCAA
CATGCGCCAACCATGGTGCTTGACAAGTCCCAGTCACTTTCTTCGCATTC
AGTGACAGACCTTCGCCGAGAGCGCCTAGCCGATCTAATCACATCTGGGC
CCGTGTTCAAATCCGCCGCTCTCTCCATCTCAGACATTTCCATCGAGGAA
GGATGCTCTACCGATGCCCGCCAAACGTGTCTTGACGATTGGTTGGATAC
GGGCGCCGTGCTGGAGGAGGCATTGGGGCGTCAGGCCAATGATATTCGTG
TGTATCAGTACTACCTCCCCGTGTACTTTTGGATCCTCCGTGAACTTGAC
CGTCACAACGAATTCATGGCAAACGCTGGTTCTCGTCCACGTCCGTTTAT
TTTGGGCTTCTCTTGTCCACAGGGTGGTGGAAAGACAACCATGACTACCT
TCATGGAAACTTTGCTGCGAAAGGCAGGGAGAAGCGTTCAGATTGCTAGT
CTGGATGACTTTTACCTCACCAATGCGCAGCAAAGAGAGGTTGCTGCCAA
GCATCCTGGTAACAGACTCATGCAATATCGTGGCATGCCGGGAACTCATG
ATCTTGAACTTGTCAACACCACCTTGGATGACCTCCGTCGCGGACAGGAT
GTGAGCATCCCCAAGTACGACAAGACAGCCTTCAACGGTCGTGGCGATCG
TGCTCCCAAGGAGCAGTGGAAGCACATCTCCGACTCAACGGACGTGGTAC
TAGTGGAGGGGTGGTGTCTCGGGTTCGAACCAGTTCCCACCGACCAGGTT
GTTGACGCGGACCTGGCCGTGGTCAATGAAGCTCTTCATGAGTTCGTTGC
CATGTACAAGCGTTTTGATGGGTTGTTCATAATTGAGATCAGTAACATGG
AGTGGGTGTACGACTGGCGTCTTCAGGCAGAACGTGGCACGCGTGCTTCA
GGCCGCCCTGGCCTGACAGATGAGCAGGTAATTGACTTTGTGAGCCGCTT
TATGCCAGCGTACAAGCAATATTCCCAAAGCTTGTACAACAGAAGTGAGC
CGTTGTTCCCGAACCATGAGCTGCATATTGAAATCGATCAGTCACGGAGA
CCCGTTCATCGCAAGAGGGATTGTTAG
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