Gchil3719.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3719.t1
Unique NameGchil3719.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length613
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025222_piloncontigtig00025222_pilon:929029..931961 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3719Gchil3719Gracilaria chilensis NLEC103_M9 malegenetig00025222_pilon 929029..931961 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3719.t1Gchil3719.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025222_pilon 929029..931961 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3719.t1.start1Gchil3719.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025222_pilon 929029..929031 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3719.t1.CDS1Gchil3719.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 929029..929311 +
Gchil3719.t1.CDS2Gchil3719.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 930055..930542 +
Gchil3719.t1.CDS3Gchil3719.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 930657..930960 +
Gchil3719.t1.CDS4Gchil3719.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 931050..931084 +
Gchil3719.t1.CDS5Gchil3719.t1.CDS5Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 931233..931961 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3719.t1.exon1Gchil3719.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 929029..929311 +
Gchil3719.t1.exon2Gchil3719.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 930055..930542 +
Gchil3719.t1.exon3Gchil3719.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 930657..930960 +
Gchil3719.t1.exon4Gchil3719.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 931050..931084 +
Gchil3719.t1.exon5Gchil3719.t1.exon5Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 931233..931961 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3719.t1.intron1Gchil3719.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00025222_pilon 929312..930054 +
Gchil3719.t1.intron2Gchil3719.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00025222_pilon 930543..930656 +
Gchil3719.t1.intron3Gchil3719.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00025222_pilon 930961..931049 +
Gchil3719.t1.intron4Gchil3719.t1.intron4Gracilaria chilensis NLEC103_M9 maleintrontig00025222_pilon 931085..931232 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3719.t1.stop1Gchil3719.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025222_pilon 931959..931961 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3719.t1 ID=Gchil3719.t1|Name=Gchil3719.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=613bp
MIPRTHHLQGQRSVSDTSKVSPSATIRQTPFLPKKHAPCLPSSHHRVVAS
DSGAGIGVLSGRSAGSIEVQNSAPVSVGGGRATTSAHELSDNHSAQRSRP
ARDRTPVTIVPERSVSVLPERLDTLAVSSERTEEASLQEDEYPLVFTAAV
EIESSPRSLGRATSFPIMLGSGPARGRGRCGTTKRVTRSTSRTPTNIGFC
SMPVPATQFSPGTPSDPYQRSGGLPSTTQTNWAHTLAFGAANRTTSQYGP
FGNTFDHDCKRLRSVPLLLKKRDQESQPRQGRLECYQSRQRHTPLTYFIP
SIYPSDLQYVRIEPELDYYRRLVVQVCQYPSIPETYLPVSPDLVSLNRPF
TTIIWADRILLTTYKGQTRLWTVLVAILAPEAARNGIDWDCLNLDSDIYG
DGVQPVGRNFFIPPRVAQNIFRFGYENIVEGTDYTVKYLDSYLDQSKNYH
WDSHQGWEAFHSAPWEIVPRHAQYYPGAHPVYGAFASPEPYHGTVKTPVG
RYAGPFSSEPLPQGRKSPILTGVTPTQPSSSRVAGLVRPLLAGIARRPPQ
PMMDSPAVVGLLARIRHSCVTNFRRAGPTSVVAALTLLEGLLPRHAQYLK
ALNQLGKFQSLF*
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spliced messenger RNA

>Gchil3719.t1 ID=Gchil3719.t1|Name=Gchil3719.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1839bp|location=Sequence derived from alignment at tig00025222_pilon:929029..931961+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atgattcctcgcacccatcacctacaaggtcagcgtagtgtatcggacac
ctcaaaggtcagcccttccgccactatacgacagacccccttcctaccca
agaagcacgccccgtgtctcccttcatcccaccatagagttgtggcgagc
gacagcggcgcgggcatcggagtattgtctgggcgcagcgctggatccat
tgaggttcagaactcagcgccagtatcggttgggggagggcgcgcgacga
cgtcggcgcacgaattgagcgacaaccattcagctcaaaggtctagaccc
gctcgcgaccgcacgccggtcactattgtacccgaaaggtcggtttcggt
actaccggaaaggttagatacgttggccgtctcctcagaacggaccgagg
aggcttcacttcaggaggatgaatacccgctggtgttcaccgcggcggtg
gagatcgagtcatcacctcgttcgttgggtcgagctacgtccttcccaat
catgttaggtagcggcccagctcgtggccgtggacgctgtggtactacca
agagggtgactcgctcgacttcgcgaacgcctaccaacattgggttttgc
agcatgcctgtccctgcgactcagttctcccctgggactccgtctgaccc
gtaccaacgcagtggtggacttccttcgacgacccagaccaattgggctc
acactctggcgttcggtgcggcgaaccggacgacgagtcagtatggacct
tttggaaataccttcgaccacgactgcaagcgccttcgctccgttccatt
gcttttgaagaaacgggaccaagagtctcaacctcgtcagggtcgactgg
aatgttaccagagtcggcagcgtcatacacctttgacgtatttcatcccg
tcgatatatccgagcgacttgcagtatgtgcgcatcgaaccggagctgga
ttattaccgtcgattggtggtgcaagtgtgccagtacccgtctattccgg
agacttaccttccggtttcacctgacttggtttccctgaatcggcctttc
accactatcatttgggctgaccgtatacttctcacaacgtacaaagggca
gacgagattgtggaccgtgttggttgccatcctggctccggaggccgccc
gtaacggtatcgattgggattgtctcaatctcgactctgacatatacgga
gatggtgttcaacctgtaggtcgcaacttcttcatacctccgagggttgc
ccagaatattttccgatttggttacgagaacatcgtggaggggaccgatt
ataccgtgaagtacttggactcgtatctcgatcagagcaagaattaccat
tgggattcccatcaaggttgggaggctttccattccgcaccttgggagat
tgtgcctcgccacgcccaatattatcccggggcgcatcctgtttatggag
ctttcgcgagccccgaaccttatcacggtactgtgaagacaccagttggt
cgttatgctggccccttctcgtccgagccgttacctcaaggtcgtaagtc
gcctatccttactggtgtgactcctactcaaccgagctcctcgcgggttg
ctggtctggttcgacctctgttggcgggtattgctcgtcgtccgcctcaa
cctatgatggattctccggccgtggtcggtttgctggctcgaatacgcca
ttcttgcgtcaccaactttcggagggctgggcctacctccgtggttgctg
cattaacgctccttgaaggtttgctgccgcgccatgcgcaatacctgaag
gcgctaaaccaacttgggaagttccagagtctgttctag
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protein sequence of Gchil3719.t1

>Gchil3719.t1 ID=Gchil3719.t1|Name=Gchil3719.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=613bp
MIPRTHHLQGQRSVSDTSKVSPSATIRQTPFLPKKHAPCLPSSHHRVVAS
DSGAGIGVLSGRSAGSIEVQNSAPVSVGGGRATTSAHELSDNHSAQRSRP
ARDRTPVTIVPERSVSVLPERLDTLAVSSERTEEASLQEDEYPLVFTAAV
EIESSPRSLGRATSFPIMLGSGPARGRGRCGTTKRVTRSTSRTPTNIGFC
SMPVPATQFSPGTPSDPYQRSGGLPSTTQTNWAHTLAFGAANRTTSQYGP
FGNTFDHDCKRLRSVPLLLKKRDQESQPRQGRLECYQSRQRHTPLTYFIP
SIYPSDLQYVRIEPELDYYRRLVVQVCQYPSIPETYLPVSPDLVSLNRPF
TTIIWADRILLTTYKGQTRLWTVLVAILAPEAARNGIDWDCLNLDSDIYG
DGVQPVGRNFFIPPRVAQNIFRFGYENIVEGTDYTVKYLDSYLDQSKNYH
WDSHQGWEAFHSAPWEIVPRHAQYYPGAHPVYGAFASPEPYHGTVKTPVG
RYAGPFSSEPLPQGRKSPILTGVTPTQPSSSRVAGLVRPLLAGIARRPPQ
PMMDSPAVVGLLARIRHSCVTNFRRAGPTSVVAALTLLEGLLPRHAQYLK
ALNQLGKFQSLF*
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mRNA from alignment at tig00025222_pilon:929029..931961+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3719.t1 ID=Gchil3719.t1|Name=Gchil3719.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2933bp|location=Sequence derived from alignment at tig00025222_pilon:929029..931961+ (Gracilaria chilensis NLEC103_M9 male)
atgattcctcgcacccatcacctacaaggtcagcgtagtgtatcggacac
ctcaaaggtcagcccttccgccactatacgacagacccccttcctaccca
agaagcacgccccgtgtctcccttcatcccaccatagagttgtggcgagc
gacagcggcgcgggcatcggagtattgtctgggcgcagcgctggatccat
tgaggttcagaactcagcgccagtatcggttgggggagggcgcgcgacga
cgtcggcgcacgaattgagcgacaaccattcaggtagggactgccatgag
ggcgatgcagtgtaactcgcgcgctcgcggacaccttttcggtagtggcc
ctgcttgcttgcgattctgcttccgcatagcccccctgtctaaccaagtg
ggtatctcacccttcccggttactaaaacttcaggttcctcctaggtccc
tgcgcgcgccgtcccgcctgatagttttcacggctcgataacccttcagg
tattggtgcccttagttggcggcgtcgcgaccgtaaccgtgctgtccggc
tttccctgaaggtttcctggcttctcgacctttcaggtctcgtctacctt
gtaaggattgactcgtggcgccggtggggcctgagcctgcgtcgatacaa
ccattgaggtgttggcctgggtccgtggtgggagctttcggttgtgagat
cttattggtgttgagcggcgccgtcggtaattacgcgacctttttccggt
tttgcattccggtttactctcaaggcgatgacaggatcgcgcggcctcca
cacacgcgttcgaacccatttggtaccacgtcggtgcaccccgcgccgca
tcgtggattcgtcaccgatacctcgaaggggtgggtcgtccccacaagca
gcaccagcgctggagagacgtgagatgccgccggtttccattgaggttga
agaagtcggcgactccgaggggattgacacccctgcagttatgccttaag
gtcggattggtcccgttccacgatagctcaaaggtctagacccgctcgcg
accgcacgccggtcactattgtacccgaaaggtcggtttcggtactaccg
gaaaggttagatacgttggccgtctcctcagaacggaccgaggaggcttc
acttcaggaggatgaatacccgctggtgttcaccgcggcggtggagatcg
agtcatcacctcgttcgttgggtcgagctacgtccttcccaatcatgtta
ggtagcggcccagctcgtggccgtggacgctgtggtactaccaagagggt
gactcgctcgacttcgcgaacgcctaccaacattgggttttgcagcatgc
ctgtccctgcgactcagttctcccctgggactccgtctgacccgtaccaa
cgcagtggtggacttccttcgacgacccagaccaattgggctcacactct
ggcgttcggtgcggcgaaccggacgacgagtcagtatggaccttttggaa
ataccttcgaccacgtgacgaacaatgacctgtcgaagcacgattggcct
gcggcggtggggaattcgtcattgccggcagctcttaccagaccaaagtt
ggatacctgcttgggtttgtcccgttaggactgcaagcgccttcgctccg
ttccattgcttttgaagaaacgggaccaagagtctcaacctcgtcagggt
cgactggaatgttaccagagtcggcagcgtcatacacctttgacgtattt
catcccgtcgatatatccgagcgacttgcagtatgtgcgcatcgaaccgg
agctggattattaccgtcgattggtggtgcaagtgtgccagtacccgtct
attccggagacttaccttccggtttcacctgacttggtttccctgaatcg
gcctttcaccactatcatttgggctgaccgtagtaggtggggcgaggatg
cagcgacggagagtcgcgttcgcactcgcaactcttacactcgcgttatg
catatgtttcataacgtcgagtacttctcacaacgtacaaagggcagacg
agattggtacgtgctttgaccatagtgggggaagtcctatgaggttccgt
tatcgctgagcgtgcccactccgccggttttggcgtacttcgggagtcag
atttcccggatcctagagcggtattacctcctttgatcgatttctctctc
ggagtggaccgtgttggttgccatcctggctccggaggccgcccgtaacg
gtatcgattgggattgtctcaatctcgactctgacatatacggagatggt
gttcaacctgtaggtcgcaacttcttcatacctccgagggttgcccagaa
tattttccgatttggttacgagaacatcgtggaggggaccgattataccg
tgaagtacttggactcgtatctcgatcagagcaagaattaccattgggat
tcccatcaaggttgggaggctttccattccgcaccttgggagattgtgcc
tcgccacgcccaatattatcccggggcgcatcctgtttatggagctttcg
cgagccccgaaccttatcacggtactgtgaagacaccagttggtcgttat
gctggccccttctcgtccgagccgttacctcaaggtcgtaagtcgcctat
ccttactggtgtgactcctactcaaccgagctcctcgcgggttgctggtc
tggttcgacctctgttggcgggtattgctcgtcgtccgcctcaacctatg
atggattctccggccgtggtcggtttgctggctcgaatacgccattcttg
cgtcaccaactttcggagggctgggcctacctccgtggttgctgcattaa
cgctccttgaaggtttgctgccgcgccatgcgcaatacctgaaggcgcta
aaccaacttgggaagttccagagtctgttctag
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Coding sequence (CDS) from alignment at tig00025222_pilon:929029..931961+

>Gchil3719.t1 ID=Gchil3719.t1|Name=Gchil3719.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1839bp|location=Sequence derived from alignment at tig00025222_pilon:929029..931961+ (Gracilaria chilensis NLEC103_M9 male)
atgattcctcgcacccatcacctacaaggtcagcgtagtgtatcggacac
ctcaaaggtcagcccttccgccactatacgacagacccccttcctaccca
agaagcacgccccgtgtctcccttcatcccaccatagagttgtggcgagc
gacagcggcgcgggcatcggagtattgtctgggcgcagcgctggatccat
tgaggttcagaactcagcgccagtatcggttgggggagggcgcgcgacga
cgtcggcgcacgaattgagcgacaaccattcagctcaaaggtctagaccc
gctcgcgaccgcacgccggtcactattgtacccgaaaggtcggtttcggt
actaccggaaaggttagatacgttggccgtctcctcagaacggaccgagg
aggcttcacttcaggaggatgaatacccgctggtgttcaccgcggcggtg
gagatcgagtcatcacctcgttcgttgggtcgagctacgtccttcccaat
catgttaggtagcggcccagctcgtggccgtggacgctgtggtactacca
agagggtgactcgctcgacttcgcgaacgcctaccaacattgggttttgc
agcatgcctgtccctgcgactcagttctcccctgggactccgtctgaccc
gtaccaacgcagtggtggacttccttcgacgacccagaccaattgggctc
acactctggcgttcggtgcggcgaaccggacgacgagtcagtatggacct
tttggaaataccttcgaccacgactgcaagcgccttcgctccgttccatt
gcttttgaagaaacgggaccaagagtctcaacctcgtcagggtcgactgg
aatgttaccagagtcggcagcgtcatacacctttgacgtatttcatcccg
tcgatatatccgagcgacttgcagtatgtgcgcatcgaaccggagctgga
ttattaccgtcgattggtggtgcaagtgtgccagtacccgtctattccgg
agacttaccttccggtttcacctgacttggtttccctgaatcggcctttc
accactatcatttgggctgaccgtatacttctcacaacgtacaaagggca
gacgagattgtggaccgtgttggttgccatcctggctccggaggccgccc
gtaacggtatcgattgggattgtctcaatctcgactctgacatatacgga
gatggtgttcaacctgtaggtcgcaacttcttcatacctccgagggttgc
ccagaatattttccgatttggttacgagaacatcgtggaggggaccgatt
ataccgtgaagtacttggactcgtatctcgatcagagcaagaattaccat
tgggattcccatcaaggttgggaggctttccattccgcaccttgggagat
tgtgcctcgccacgcccaatattatcccggggcgcatcctgtttatggag
ctttcgcgagccccgaaccttatcacggtactgtgaagacaccagttggt
cgttatgctggccccttctcgtccgagccgttacctcaaggtcgtaagtc
gcctatccttactggtgtgactcctactcaaccgagctcctcgcgggttg
ctggtctggttcgacctctgttggcgggtattgctcgtcgtccgcctcaa
cctatgatggattctccggccgtggtcggtttgctggctcgaatacgcca
ttcttgcgtcaccaactttcggagggctgggcctacctccgtggttgctg
cattaacgctccttgaaggtttgctgccgcgccatgcgcaatacctgaag
gcgctaaaccaacttgggaagttccagagtctgttctag
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