Gchil3718.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3718.t1
Unique NameGchil3718.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length370
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025222_piloncontigtig00025222_pilon:911850..912959 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog79684.XP_005355848.1
Preferred nameCHST9
PFAMsSulfotransfer_2
Max annot lvl33208|Metazoa
KEGG rclassRC00007,RC00231
KEGG koko:K01017,ko:K09672,ko:K09673
KEGG ReactionR02180
KEGG Pathwayko00513,ko00532,ko01100,map00513,map00532,map01100
GOsGO:0000139,GO:0001537,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006022,GO:0006023,GO:0006024,GO:0006029,GO:0006082,GO:0006790,GO:0006807,GO:0008146,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0010817,GO:0012505,GO:0016020,GO:0016021,GO:0016740,GO:0016782,GO:0019538,GO:0030166,GO:0030203,GO:0030204,GO:0030206,GO:0031090,GO:0031224,GO:0031984,GO:0034481,GO:0034645,GO:0042445,GO:0042446,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0047756,GO:0050650,GO:0050654,GO:0065007,GO:0065008,GO:0071704,GO:0098588,GO:0098791,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903510
Evalue5.64e-11
EggNOG OGsKOG4651@1|root,KOG4651@2759|Eukaryota,39U7A@33154|Opisthokonta,3BIUW@33208|Metazoa,3D0FI@33213|Bilateria,483NX@7711|Chordata,48XX5@7742|Vertebrata,3J80W@40674|Mammalia,35MB6@314146|Euarchontoglires,4PY1F@9989|Rodentia
EC2.8.2.5
DescriptionSulfotransferase family
COG categoryG
BRITEko00000,ko00001,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3718Gchil3718Gracilaria chilensis NLEC103_M9 malegenetig00025222_pilon 911850..912959 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3718.t1.stop1Gchil3718.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025222_pilon 911850..911852 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3718.t1.CDS1Gchil3718.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 911850..912959 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3718.t1.exon1Gchil3718.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 911850..912959 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3718.t1.start1Gchil3718.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025222_pilon 912957..912959 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3718.t1Gchil3718.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025222_pilon 911850..912959 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3718.t1 ID=Gchil3718.t1|Name=Gchil3718.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=370bp
MREPVAFPTRVALLLAPFAGLLLLLLLWRAPLSCSASSCSSSSSPRRGAF
SRAAARVPQLSALGAGTGGEAVRRRLRAACALCARDAAVVDVARLRSYGP
AYSSIVVSHALKVVYVPVFKAATTATMWQMAYLERNARVLAAARSQLDVA
LHDMAHPAWRRHAIHRWPSHRIRAVLRSPAYLKFGFVRNPYHRLVSAYVD
KIHRPAVHSPEYQAQMYSLFGHDLAARAAANRSKPSFQHFVATVSVVLSQ
PRAGSAHQPLPFEDNRSRRDLHWRPQVELLHPDIIPFDFIGTFDNLHHDR
RLVLQWMYQHTTRRIPSHLLEKRHATNPAHKQHLYKLIRHNHSLRQRIIQ
TYKQDFETFNFSTLPPSSE*
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spliced messenger RNA

>Gchil3718.t1 ID=Gchil3718.t1|Name=Gchil3718.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1110bp|location=Sequence derived from alignment at tig00025222_pilon:911850..912959- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAGAGCCAGTGGCGTTCCCGACGCGCGTTGCGCTGCTGCTCGCCCC
CTTCGCTGGGCTGCTGCTGCTGCTGCTGCTTTGGCGCGCGCCGCTGTCGT
GCTCAGCGTCAAGTTGTTCGTCGTCCTCGTCGCCGCGGCGCGGCGCCTTC
TCGCGCGCGGCTGCGCGCGTGCCGCAGCTGTCGGCGCTGGGCGCAGGCAC
GGGCGGCGAGGCGGTGAGGCGGCGACTGCGCGCGGCGTGCGCGCTGTGCG
CGCGCGACGCGGCGGTGGTGGACGTGGCGCGGCTGCGGTCGTACGGGCCG
GCGTACTCGTCCATCGTCGTGTCGCACGCGCTCAAGGTGGTGTACGTGCC
GGTGTTCAAGGCGGCCACCACGGCCACCATGTGGCAGATGGCGTACCTGG
AGCGCAACGCGCGCGTGCTCGCCGCCGCGCGCTCCCAGCTGGACGTGGCG
CTGCACGACATGGCGCACCCCGCGTGGCGCCGCCACGCCATCCACCGCTG
GCCGTCGCACCGCATCCGCGCCGTGCTGCGCAGCCCCGCCTACCTCAAGT
TCGGCTTCGTCCGCAACCCCTACCACCGCCTTGTGTCCGCCTACGTCGAC
AAGATTCACCGCCCCGCCGTCCATTCGCCCGAGTATCAGGCGCAAATGTA
CAGCCTCTTCGGCCACGACCTCGCCGCGAGGGCCGCGGCCAACCGCTCCA
AGCCCTCCTTCCAGCACTTCGTCGCAACGGTGTCGGTCGTGCTCAGCCAG
CCGCGCGCCGGCTCCGCCCATCAACCCCTTCCCTTCGAGGACAACCGCAG
CCGGCGCGATCTTCACTGGCGCCCGCAGGTCGAGCTGCTGCACCCCGATA
TCATCCCTTTCGACTTCATCGGCACCTTTGACAACCTGCATCACGACAGG
CGCCTTGTACTGCAATGGATGTATCAGCACACCACGCGCCGCATCCCATC
CCACCTGCTTGAGAAGCGCCACGCAACAAACCCTGCCCACAAGCAGCATC
TGTACAAACTCATTCGCCACAATCACTCCTTACGACAACGCATCATTCAA
ACGTACAAGCAGGACTTTGAAACATTCAACTTCTCCACTCTTCCTCCTTC
GTCCGAGTGA
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protein sequence of Gchil3718.t1

>Gchil3718.t1 ID=Gchil3718.t1|Name=Gchil3718.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=370bp
MREPVAFPTRVALLLAPFAGLLLLLLLWRAPLSCSASSCSSSSSPRRGAF
SRAAARVPQLSALGAGTGGEAVRRRLRAACALCARDAAVVDVARLRSYGP
AYSSIVVSHALKVVYVPVFKAATTATMWQMAYLERNARVLAAARSQLDVA
LHDMAHPAWRRHAIHRWPSHRIRAVLRSPAYLKFGFVRNPYHRLVSAYVD
KIHRPAVHSPEYQAQMYSLFGHDLAARAAANRSKPSFQHFVATVSVVLSQ
PRAGSAHQPLPFEDNRSRRDLHWRPQVELLHPDIIPFDFIGTFDNLHHDR
RLVLQWMYQHTTRRIPSHLLEKRHATNPAHKQHLYKLIRHNHSLRQRIIQ
TYKQDFETFNFSTLPPSSE*
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mRNA from alignment at tig00025222_pilon:911850..912959-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3718.t1 ID=Gchil3718.t1|Name=Gchil3718.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1110bp|location=Sequence derived from alignment at tig00025222_pilon:911850..912959- (Gracilaria chilensis NLEC103_M9 male)
ATGCGAGAGCCAGTGGCGTTCCCGACGCGCGTTGCGCTGCTGCTCGCCCC
CTTCGCTGGGCTGCTGCTGCTGCTGCTGCTTTGGCGCGCGCCGCTGTCGT
GCTCAGCGTCAAGTTGTTCGTCGTCCTCGTCGCCGCGGCGCGGCGCCTTC
TCGCGCGCGGCTGCGCGCGTGCCGCAGCTGTCGGCGCTGGGCGCAGGCAC
GGGCGGCGAGGCGGTGAGGCGGCGACTGCGCGCGGCGTGCGCGCTGTGCG
CGCGCGACGCGGCGGTGGTGGACGTGGCGCGGCTGCGGTCGTACGGGCCG
GCGTACTCGTCCATCGTCGTGTCGCACGCGCTCAAGGTGGTGTACGTGCC
GGTGTTCAAGGCGGCCACCACGGCCACCATGTGGCAGATGGCGTACCTGG
AGCGCAACGCGCGCGTGCTCGCCGCCGCGCGCTCCCAGCTGGACGTGGCG
CTGCACGACATGGCGCACCCCGCGTGGCGCCGCCACGCCATCCACCGCTG
GCCGTCGCACCGCATCCGCGCCGTGCTGCGCAGCCCCGCCTACCTCAAGT
TCGGCTTCGTCCGCAACCCCTACCACCGCCTTGTGTCCGCCTACGTCGAC
AAGATTCACCGCCCCGCCGTCCATTCGCCCGAGTATCAGGCGCAAATGTA
CAGCCTCTTCGGCCACGACCTCGCCGCGAGGGCCGCGGCCAACCGCTCCA
AGCCCTCCTTCCAGCACTTCGTCGCAACGGTGTCGGTCGTGCTCAGCCAG
CCGCGCGCCGGCTCCGCCCATCAACCCCTTCCCTTCGAGGACAACCGCAG
CCGGCGCGATCTTCACTGGCGCCCGCAGGTCGAGCTGCTGCACCCCGATA
TCATCCCTTTCGACTTCATCGGCACCTTTGACAACCTGCATCACGACAGG
CGCCTTGTACTGCAATGGATGTATCAGCACACCACGCGCCGCATCCCATC
CCACCTGCTTGAGAAGCGCCACGCAACAAACCCTGCCCACAAGCAGCATC
TGTACAAACTCATTCGCCACAATCACTCCTTACGACAACGCATCATTCAA
ACGTACAAGCAGGACTTTGAAACATTCAACTTCTCCACTCTTCCTCCTTC
GTCCGAGTGA
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Coding sequence (CDS) from alignment at tig00025222_pilon:911850..912959-

>Gchil3718.t1 ID=Gchil3718.t1|Name=Gchil3718.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1110bp|location=Sequence derived from alignment at tig00025222_pilon:911850..912959- (Gracilaria chilensis NLEC103_M9 male)
ATGCGAGAGCCAGTGGCGTTCCCGACGCGCGTTGCGCTGCTGCTCGCCCC
CTTCGCTGGGCTGCTGCTGCTGCTGCTGCTTTGGCGCGCGCCGCTGTCGT
GCTCAGCGTCAAGTTGTTCGTCGTCCTCGTCGCCGCGGCGCGGCGCCTTC
TCGCGCGCGGCTGCGCGCGTGCCGCAGCTGTCGGCGCTGGGCGCAGGCAC
GGGCGGCGAGGCGGTGAGGCGGCGACTGCGCGCGGCGTGCGCGCTGTGCG
CGCGCGACGCGGCGGTGGTGGACGTGGCGCGGCTGCGGTCGTACGGGCCG
GCGTACTCGTCCATCGTCGTGTCGCACGCGCTCAAGGTGGTGTACGTGCC
GGTGTTCAAGGCGGCCACCACGGCCACCATGTGGCAGATGGCGTACCTGG
AGCGCAACGCGCGCGTGCTCGCCGCCGCGCGCTCCCAGCTGGACGTGGCG
CTGCACGACATGGCGCACCCCGCGTGGCGCCGCCACGCCATCCACCGCTG
GCCGTCGCACCGCATCCGCGCCGTGCTGCGCAGCCCCGCCTACCTCAAGT
TCGGCTTCGTCCGCAACCCCTACCACCGCCTTGTGTCCGCCTACGTCGAC
AAGATTCACCGCCCCGCCGTCCATTCGCCCGAGTATCAGGCGCAAATGTA
CAGCCTCTTCGGCCACGACCTCGCCGCGAGGGCCGCGGCCAACCGCTCCA
AGCCCTCCTTCCAGCACTTCGTCGCAACGGTGTCGGTCGTGCTCAGCCAG
CCGCGCGCCGGCTCCGCCCATCAACCCCTTCCCTTCGAGGACAACCGCAG
CCGGCGCGATCTTCACTGGCGCCCGCAGGTCGAGCTGCTGCACCCCGATA
TCATCCCTTTCGACTTCATCGGCACCTTTGACAACCTGCATCACGACAGG
CGCCTTGTACTGCAATGGATGTATCAGCACACCACGCGCCGCATCCCATC
CCACCTGCTTGAGAAGCGCCACGCAACAAACCCTGCCCACAAGCAGCATC
TGTACAAACTCATTCGCCACAATCACTCCTTACGACAACGCATCATTCAA
ACGTACAAGCAGGACTTTGAAACATTCAACTTCTCCACTCTTCCTCCTTC
GTCCGAGTGA
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