Gchil3711.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3711.t1
Unique NameGchil3711.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length381
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025222_piloncontigtig00025222_pilon:834911..836053 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMG217CT
PFAMsadh_short
Max annot lvl2759|Eukaryota
KEGG rclassRC01008
KEGG koko:K00218
KEGG ReactionR03845,R06286
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
Evalue4.51e-116
EggNOG OGsCOG1028@1|root,KOG1208@2759|Eukaryota
EC1.3.1.33
Descriptionoxidation-reduction process
COG categoryIQ
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3711Gchil3711Gracilaria chilensis NLEC103_M9 malegenetig00025222_pilon 834911..836053 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3711.t1.stop1Gchil3711.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025222_pilon 834911..834913 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3711.t1.CDS1Gchil3711.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 834911..836053 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3711.t1.exon1Gchil3711.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 834911..836053 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3711.t1.start1Gchil3711.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025222_pilon 836051..836053 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3711.t1Gchil3711.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025222_pilon 834911..836053 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3711.t1 ID=Gchil3711.t1|Name=Gchil3711.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=381bp
MAFVNAAALPRTSAAASAERTSCAACRPVSTGAFVSPRAPLVSPVSPRSA
AAASPPARIVPAMAFKPYTAIVTGASSSIGLHAAKELAARGDYHVVLAVR
NVEKARQQAERLRMPSDSFTVMPLDLASLSSVRAFANNFASQFSSLHALV
CNAATWHPRDKKPRFTEDGFDETVQVNHLSHFLLANLLLPMLRRSLGRCV
FLATQTHNPDTLPGKIPPQADLGRLEGMVDGFNSLPGTIDGKAFEPTKAY
KDSKVCNILTMREMHRRFASSGVVFSAIFPGCIAESNLFREKRGWFRWFF
PLFQKYVTKQLVPVEEAGRRVALVASDGRFGDSGTYWQWRGSYLQGIDKT
EPVPIDPTEREADKAQMLWDLSAKLVNVPA*
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spliced messenger RNA

>Gchil3711.t1 ID=Gchil3711.t1|Name=Gchil3711.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1143bp|location=Sequence derived from alignment at tig00025222_pilon:834911..836053- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTTCGTCAACGCCGCCGCGCTCCCGCGCACGTCCGCCGCCGCATC
TGCCGAGCGCACATCTTGCGCCGCGTGCCGCCCCGTCTCCACCGGCGCCT
TCGTGTCGCCACGCGCGCCGCTCGTCTCGCCCGTCTCGCCGCGATCCGCC
GCCGCAGCGTCCCCGCCCGCGCGCATCGTGCCCGCCATGGCCTTCAAGCC
GTACACGGCAATTGTGACGGGCGCGTCGTCGTCGATCGGACTGCACGCCG
CCAAGGAGCTGGCAGCGCGCGGCGATTACCACGTCGTGCTCGCCGTGCGC
AATGTCGAAAAGGCGCGCCAGCAGGCCGAGCGTCTGCGCATGCCGTCCGA
CTCGTTCACCGTCATGCCGCTAGATCTGGCGAGTCTTTCGTCTGTTCGTG
CGTTTGCGAATAACTTTGCTTCGCAGTTCAGTTCTTTGCACGCGCTGGTT
TGTAATGCCGCGACGTGGCACCCGCGTGACAAGAAGCCGCGCTTCACGGA
GGACGGCTTCGATGAGACGGTGCAGGTCAACCATCTATCGCACTTCTTGT
TGGCAAACTTGCTGCTACCCATGCTGCGCCGCTCCTTGGGTCGCTGCGTT
TTCCTCGCCACCCAAACTCATAATCCCGACACGCTCCCCGGCAAGATCCC
GCCACAGGCCGATCTGGGTCGCCTGGAGGGCATGGTAGACGGCTTTAACA
GCCTACCCGGTACCATTGACGGCAAGGCGTTTGAGCCTACCAAGGCGTAC
AAGGATAGCAAGGTGTGCAACATTCTCACGATGCGCGAGATGCACCGTCG
CTTCGCATCGTCGGGCGTGGTGTTCTCCGCCATCTTCCCGGGCTGCATTG
CAGAGTCTAACCTGTTCCGAGAGAAGCGCGGGTGGTTCCGCTGGTTCTTC
CCGCTTTTCCAGAAGTATGTCACCAAGCAGCTCGTGCCCGTCGAGGAGGC
GGGGCGCAGGGTAGCGCTCGTTGCCTCGGACGGCCGCTTCGGCGACTCGG
GCACCTACTGGCAGTGGCGGGGCTCGTACCTGCAGGGCATTGACAAGACC
GAGCCGGTGCCGATTGACCCCACCGAGCGTGAGGCTGACAAGGCGCAGAT
GCTGTGGGATCTCAGTGCCAAGCTCGTGAATGTGCCTGCCTGA
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protein sequence of Gchil3711.t1

>Gchil3711.t1 ID=Gchil3711.t1|Name=Gchil3711.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=381bp
MAFVNAAALPRTSAAASAERTSCAACRPVSTGAFVSPRAPLVSPVSPRSA
AAASPPARIVPAMAFKPYTAIVTGASSSIGLHAAKELAARGDYHVVLAVR
NVEKARQQAERLRMPSDSFTVMPLDLASLSSVRAFANNFASQFSSLHALV
CNAATWHPRDKKPRFTEDGFDETVQVNHLSHFLLANLLLPMLRRSLGRCV
FLATQTHNPDTLPGKIPPQADLGRLEGMVDGFNSLPGTIDGKAFEPTKAY
KDSKVCNILTMREMHRRFASSGVVFSAIFPGCIAESNLFREKRGWFRWFF
PLFQKYVTKQLVPVEEAGRRVALVASDGRFGDSGTYWQWRGSYLQGIDKT
EPVPIDPTEREADKAQMLWDLSAKLVNVPA*
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mRNA from alignment at tig00025222_pilon:834911..836053-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3711.t1 ID=Gchil3711.t1|Name=Gchil3711.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1143bp|location=Sequence derived from alignment at tig00025222_pilon:834911..836053- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCTTCGTCAACGCCGCCGCGCTCCCGCGCACGTCCGCCGCCGCATC
TGCCGAGCGCACATCTTGCGCCGCGTGCCGCCCCGTCTCCACCGGCGCCT
TCGTGTCGCCACGCGCGCCGCTCGTCTCGCCCGTCTCGCCGCGATCCGCC
GCCGCAGCGTCCCCGCCCGCGCGCATCGTGCCCGCCATGGCCTTCAAGCC
GTACACGGCAATTGTGACGGGCGCGTCGTCGTCGATCGGACTGCACGCCG
CCAAGGAGCTGGCAGCGCGCGGCGATTACCACGTCGTGCTCGCCGTGCGC
AATGTCGAAAAGGCGCGCCAGCAGGCCGAGCGTCTGCGCATGCCGTCCGA
CTCGTTCACCGTCATGCCGCTAGATCTGGCGAGTCTTTCGTCTGTTCGTG
CGTTTGCGAATAACTTTGCTTCGCAGTTCAGTTCTTTGCACGCGCTGGTT
TGTAATGCCGCGACGTGGCACCCGCGTGACAAGAAGCCGCGCTTCACGGA
GGACGGCTTCGATGAGACGGTGCAGGTCAACCATCTATCGCACTTCTTGT
TGGCAAACTTGCTGCTACCCATGCTGCGCCGCTCCTTGGGTCGCTGCGTT
TTCCTCGCCACCCAAACTCATAATCCCGACACGCTCCCCGGCAAGATCCC
GCCACAGGCCGATCTGGGTCGCCTGGAGGGCATGGTAGACGGCTTTAACA
GCCTACCCGGTACCATTGACGGCAAGGCGTTTGAGCCTACCAAGGCGTAC
AAGGATAGCAAGGTGTGCAACATTCTCACGATGCGCGAGATGCACCGTCG
CTTCGCATCGTCGGGCGTGGTGTTCTCCGCCATCTTCCCGGGCTGCATTG
CAGAGTCTAACCTGTTCCGAGAGAAGCGCGGGTGGTTCCGCTGGTTCTTC
CCGCTTTTCCAGAAGTATGTCACCAAGCAGCTCGTGCCCGTCGAGGAGGC
GGGGCGCAGGGTAGCGCTCGTTGCCTCGGACGGCCGCTTCGGCGACTCGG
GCACCTACTGGCAGTGGCGGGGCTCGTACCTGCAGGGCATTGACAAGACC
GAGCCGGTGCCGATTGACCCCACCGAGCGTGAGGCTGACAAGGCGCAGAT
GCTGTGGGATCTCAGTGCCAAGCTCGTGAATGTGCCTGCCTGA
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Coding sequence (CDS) from alignment at tig00025222_pilon:834911..836053-

>Gchil3711.t1 ID=Gchil3711.t1|Name=Gchil3711.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1143bp|location=Sequence derived from alignment at tig00025222_pilon:834911..836053- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCTTCGTCAACGCCGCCGCGCTCCCGCGCACGTCCGCCGCCGCATC
TGCCGAGCGCACATCTTGCGCCGCGTGCCGCCCCGTCTCCACCGGCGCCT
TCGTGTCGCCACGCGCGCCGCTCGTCTCGCCCGTCTCGCCGCGATCCGCC
GCCGCAGCGTCCCCGCCCGCGCGCATCGTGCCCGCCATGGCCTTCAAGCC
GTACACGGCAATTGTGACGGGCGCGTCGTCGTCGATCGGACTGCACGCCG
CCAAGGAGCTGGCAGCGCGCGGCGATTACCACGTCGTGCTCGCCGTGCGC
AATGTCGAAAAGGCGCGCCAGCAGGCCGAGCGTCTGCGCATGCCGTCCGA
CTCGTTCACCGTCATGCCGCTAGATCTGGCGAGTCTTTCGTCTGTTCGTG
CGTTTGCGAATAACTTTGCTTCGCAGTTCAGTTCTTTGCACGCGCTGGTT
TGTAATGCCGCGACGTGGCACCCGCGTGACAAGAAGCCGCGCTTCACGGA
GGACGGCTTCGATGAGACGGTGCAGGTCAACCATCTATCGCACTTCTTGT
TGGCAAACTTGCTGCTACCCATGCTGCGCCGCTCCTTGGGTCGCTGCGTT
TTCCTCGCCACCCAAACTCATAATCCCGACACGCTCCCCGGCAAGATCCC
GCCACAGGCCGATCTGGGTCGCCTGGAGGGCATGGTAGACGGCTTTAACA
GCCTACCCGGTACCATTGACGGCAAGGCGTTTGAGCCTACCAAGGCGTAC
AAGGATAGCAAGGTGTGCAACATTCTCACGATGCGCGAGATGCACCGTCG
CTTCGCATCGTCGGGCGTGGTGTTCTCCGCCATCTTCCCGGGCTGCATTG
CAGAGTCTAACCTGTTCCGAGAGAAGCGCGGGTGGTTCCGCTGGTTCTTC
CCGCTTTTCCAGAAGTATGTCACCAAGCAGCTCGTGCCCGTCGAGGAGGC
GGGGCGCAGGGTAGCGCTCGTTGCCTCGGACGGCCGCTTCGGCGACTCGG
GCACCTACTGGCAGTGGCGGGGCTCGTACCTGCAGGGCATTGACAAGACC
GAGCCGGTGCCGATTGACCCCACCGAGCGTGAGGCTGACAAGGCGCAGAT
GCTGTGGGATCTCAGTGCCAAGCTCGTGAATGTGCCTGCCTGA
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