Gchil3710.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3710.t1
Unique NameGchil3710.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length297
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025222_piloncontigtig00025222_pilon:832671..833561 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3710Gchil3710Gracilaria chilensis NLEC103_M9 malegenetig00025222_pilon 832671..833561 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3710.t1.stop1Gchil3710.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025222_pilon 832671..832673 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3710.t1.CDS1Gchil3710.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 832671..833561 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3710.t1.exon1Gchil3710.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 832671..833561 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3710.t1.start1Gchil3710.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025222_pilon 833559..833561 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3710.t1Gchil3710.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025222_pilon 832671..833561 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3710.t1 ID=Gchil3710.t1|Name=Gchil3710.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=297bp
MSNNRSRIAAFSQNGAPNSLTHVRVPSAGSSESFEINTGDETEKGAIAGV
LERFNPTAAHRSCVLRKPGTKQSIWVDEIDEESVSMKTIPRGLIRGRSIG
SIDVDDQDLMMLAQVRSASERSRSVYGAEDDEKQFLSNELGRRMYPEGFL
RFRRVGPMPIDGKQRHKLAEERDTREVIDYKGRVDYGYTQEKDSEGGDCG
YENKSDDYYEYDYNYYESDDEDACEGGGGSDVEKSTEAEEEKGEDAPKRQ
WSDDDLVSKLKHDRDADRVETGRFARRNRGEWGDYIGPWGSRSLFS*
back to top

spliced messenger RNA

>Gchil3710.t1 ID=Gchil3710.t1|Name=Gchil3710.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=891bp|location=Sequence derived from alignment at tig00025222_pilon:832671..833561- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGAACAACCGCAGCAGAATCGCAGCTTTCTCCCAGAATGGAGCGCC
CAACAGTTTGACGCATGTGCGTGTGCCCAGCGCAGGCTCCAGCGAATCGT
TCGAGATAAACACCGGTGATGAGACGGAGAAAGGCGCCATTGCCGGCGTT
TTGGAAAGATTCAACCCGACGGCTGCGCATCGCAGCTGCGTGCTGCGCAA
GCCGGGAACCAAGCAGTCCATCTGGGTTGACGAAATCGACGAGGAGAGTG
TGTCGATGAAGACGATTCCAAGGGGACTGATTCGGGGCCGCTCGATCGGC
TCGATCGATGTGGACGACCAGGACCTGATGATGCTGGCGCAGGTGCGATC
GGCCTCCGAACGATCTCGTTCCGTGTATGGGGCCGAAGATGACGAAAAGC
AATTTTTAAGCAATGAGCTAGGCAGAAGAATGTACCCAGAAGGGTTTCTT
CGCTTTCGTCGAGTGGGGCCCATGCCAATAGACGGTAAGCAGAGGCACAA
GCTTGCGGAAGAGCGCGACACAAGAGAGGTAATCGATTATAAGGGGCGGG
TCGATTACGGCTACACGCAAGAGAAGGACAGCGAGGGTGGTGATTGTGGG
TACGAAAACAAGAGCGATGATTATTATGAGTACGACTACAATTATTACGA
GAGTGACGACGAGGACGCGTGCGAAGGTGGTGGTGGGAGCGACGTCGAAA
AAAGCACAGAAGCGGAAGAGGAGAAGGGGGAGGATGCGCCGAAGAGGCAG
TGGTCTGACGATGATCTGGTGTCGAAGTTGAAACATGACAGAGACGCGGA
TCGAGTTGAGACCGGGCGCTTTGCGAGGCGGAACAGGGGCGAGTGGGGAG
ATTACATCGGGCCGTGGGGATCGAGAAGCCTGTTTTCGTGA
back to top

protein sequence of Gchil3710.t1

>Gchil3710.t1 ID=Gchil3710.t1|Name=Gchil3710.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=297bp
MSNNRSRIAAFSQNGAPNSLTHVRVPSAGSSESFEINTGDETEKGAIAGV
LERFNPTAAHRSCVLRKPGTKQSIWVDEIDEESVSMKTIPRGLIRGRSIG
SIDVDDQDLMMLAQVRSASERSRSVYGAEDDEKQFLSNELGRRMYPEGFL
RFRRVGPMPIDGKQRHKLAEERDTREVIDYKGRVDYGYTQEKDSEGGDCG
YENKSDDYYEYDYNYYESDDEDACEGGGGSDVEKSTEAEEEKGEDAPKRQ
WSDDDLVSKLKHDRDADRVETGRFARRNRGEWGDYIGPWGSRSLFS*
back to top

mRNA from alignment at tig00025222_pilon:832671..833561-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3710.t1 ID=Gchil3710.t1|Name=Gchil3710.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=891bp|location=Sequence derived from alignment at tig00025222_pilon:832671..833561- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGAACAACCGCAGCAGAATCGCAGCTTTCTCCCAGAATGGAGCGCC
CAACAGTTTGACGCATGTGCGTGTGCCCAGCGCAGGCTCCAGCGAATCGT
TCGAGATAAACACCGGTGATGAGACGGAGAAAGGCGCCATTGCCGGCGTT
TTGGAAAGATTCAACCCGACGGCTGCGCATCGCAGCTGCGTGCTGCGCAA
GCCGGGAACCAAGCAGTCCATCTGGGTTGACGAAATCGACGAGGAGAGTG
TGTCGATGAAGACGATTCCAAGGGGACTGATTCGGGGCCGCTCGATCGGC
TCGATCGATGTGGACGACCAGGACCTGATGATGCTGGCGCAGGTGCGATC
GGCCTCCGAACGATCTCGTTCCGTGTATGGGGCCGAAGATGACGAAAAGC
AATTTTTAAGCAATGAGCTAGGCAGAAGAATGTACCCAGAAGGGTTTCTT
CGCTTTCGTCGAGTGGGGCCCATGCCAATAGACGGTAAGCAGAGGCACAA
GCTTGCGGAAGAGCGCGACACAAGAGAGGTAATCGATTATAAGGGGCGGG
TCGATTACGGCTACACGCAAGAGAAGGACAGCGAGGGTGGTGATTGTGGG
TACGAAAACAAGAGCGATGATTATTATGAGTACGACTACAATTATTACGA
GAGTGACGACGAGGACGCGTGCGAAGGTGGTGGTGGGAGCGACGTCGAAA
AAAGCACAGAAGCGGAAGAGGAGAAGGGGGAGGATGCGCCGAAGAGGCAG
TGGTCTGACGATGATCTGGTGTCGAAGTTGAAACATGACAGAGACGCGGA
TCGAGTTGAGACCGGGCGCTTTGCGAGGCGGAACAGGGGCGAGTGGGGAG
ATTACATCGGGCCGTGGGGATCGAGAAGCCTGTTTTCGTGA
back to top

Coding sequence (CDS) from alignment at tig00025222_pilon:832671..833561-

>Gchil3710.t1 ID=Gchil3710.t1|Name=Gchil3710.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=891bp|location=Sequence derived from alignment at tig00025222_pilon:832671..833561- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGAACAACCGCAGCAGAATCGCAGCTTTCTCCCAGAATGGAGCGCC
CAACAGTTTGACGCATGTGCGTGTGCCCAGCGCAGGCTCCAGCGAATCGT
TCGAGATAAACACCGGTGATGAGACGGAGAAAGGCGCCATTGCCGGCGTT
TTGGAAAGATTCAACCCGACGGCTGCGCATCGCAGCTGCGTGCTGCGCAA
GCCGGGAACCAAGCAGTCCATCTGGGTTGACGAAATCGACGAGGAGAGTG
TGTCGATGAAGACGATTCCAAGGGGACTGATTCGGGGCCGCTCGATCGGC
TCGATCGATGTGGACGACCAGGACCTGATGATGCTGGCGCAGGTGCGATC
GGCCTCCGAACGATCTCGTTCCGTGTATGGGGCCGAAGATGACGAAAAGC
AATTTTTAAGCAATGAGCTAGGCAGAAGAATGTACCCAGAAGGGTTTCTT
CGCTTTCGTCGAGTGGGGCCCATGCCAATAGACGGTAAGCAGAGGCACAA
GCTTGCGGAAGAGCGCGACACAAGAGAGGTAATCGATTATAAGGGGCGGG
TCGATTACGGCTACACGCAAGAGAAGGACAGCGAGGGTGGTGATTGTGGG
TACGAAAACAAGAGCGATGATTATTATGAGTACGACTACAATTATTACGA
GAGTGACGACGAGGACGCGTGCGAAGGTGGTGGTGGGAGCGACGTCGAAA
AAAGCACAGAAGCGGAAGAGGAGAAGGGGGAGGATGCGCCGAAGAGGCAG
TGGTCTGACGATGATCTGGTGTCGAAGTTGAAACATGACAGAGACGCGGA
TCGAGTTGAGACCGGGCGCTTTGCGAGGCGGAACAGGGGCGAGTGGGGAG
ATTACATCGGGCCGTGGGGATCGAGAAGCCTGTTTTCGTGA
back to top