Gchil3706.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3706.t1
Unique NameGchil3706.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length285
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025222_piloncontigtig00025222_pilon:713601..714455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3706Gchil3706Gracilaria chilensis NLEC103_M9 malegenetig00025222_pilon 713601..714455 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3706.t1.start1Gchil3706.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025222_pilon 713601..713603 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3706.t1.CDS1Gchil3706.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 713601..714455 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3706.t1.exon1Gchil3706.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 713601..714455 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3706.t1.stop1Gchil3706.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025222_pilon 714453..714455 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3706.t1Gchil3706.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025222_pilon 713601..714455 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3706.t1 ID=Gchil3706.t1|Name=Gchil3706.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=285bp
MSSFEHDIYEFEAALKQDGNAGTQSGASVYRVCPQSCAATKSTPLHVSKS
TRELANIDKVLDADVLDDSSLDLFDPPIPIIGTDKEHARNIYASDVAIFQ
AHVNIWRDLFHGNSNWTFVVNCRVTSVEQILRQLLENKLWDQMTSAPNSD
GFAWEMLAFAVAQPQEAGSNVQLETVHIAQQIHIDDIHAYALSKRGSEIL
LSHTRAFTLPLHEFLSAVLAQVTAPRVGRTHTTSITLSKQCEKRTRFVAS
DLLPFYPPLHWTYTMSSFASPRTAPAPAMERHIP*
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spliced messenger RNA

>Gchil3706.t1 ID=Gchil3706.t1|Name=Gchil3706.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=855bp|location=Sequence derived from alignment at tig00025222_pilon:713601..714455+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCATCGTTTGAACATGACATTTATGAGTTTGAGGCAGCACTGAAGCA
GGACGGCAATGCAGGCACTCAAAGTGGTGCTTCAGTCTATCGTGTATGCC
CTCAGAGCTGCGCGGCGACAAAAAGCACCCCACTACATGTTTCAAAATCG
ACAAGAGAACTCGCCAACATCGACAAAGTTCTGGATGCCGACGTGCTCGA
TGATTCCTCACTCGACTTATTCGACCCGCCAATCCCCATCATTGGAACGG
ATAAAGAGCACGCGCGCAACATTTACGCAAGTGATGTTGCGATATTTCAG
GCACACGTCAACATCTGGCGCGATCTCTTTCACGGCAACAGCAACTGGAC
ATTTGTAGTGAATTGCAGAGTGACAAGCGTGGAACAAATCCTAAGGCAGC
TCCTGGAGAACAAACTATGGGACCAAATGACCAGCGCACCGAACAGCGAT
GGCTTCGCGTGGGAAATGCTCGCGTTTGCCGTTGCCCAACCACAAGAGGC
AGGAAGCAATGTTCAGCTTGAAACGGTCCACATTGCGCAACAAATTCATA
TCGATGACATTCATGCATACGCTCTCAGCAAGCGAGGTTCCGAGATACTG
CTGTCACACACCAGGGCATTCACGCTGCCACTGCATGAGTTTCTGAGTGC
GGTGCTGGCGCAAGTCACGGCACCGCGAGTAGGAAGAACACACACGACTT
CAATCACACTTTCAAAGCAATGTGAAAAACGTACGAGATTTGTCGCAAGC
GATTTACTGCCTTTCTATCCCCCGTTACACTGGACGTACACCATGTCGAG
TTTTGCGTCACCGCGGACAGCGCCTGCTCCAGCGATGGAAAGGCATATTC
CCTAG
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protein sequence of Gchil3706.t1

>Gchil3706.t1 ID=Gchil3706.t1|Name=Gchil3706.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=285bp
MSSFEHDIYEFEAALKQDGNAGTQSGASVYRVCPQSCAATKSTPLHVSKS
TRELANIDKVLDADVLDDSSLDLFDPPIPIIGTDKEHARNIYASDVAIFQ
AHVNIWRDLFHGNSNWTFVVNCRVTSVEQILRQLLENKLWDQMTSAPNSD
GFAWEMLAFAVAQPQEAGSNVQLETVHIAQQIHIDDIHAYALSKRGSEIL
LSHTRAFTLPLHEFLSAVLAQVTAPRVGRTHTTSITLSKQCEKRTRFVAS
DLLPFYPPLHWTYTMSSFASPRTAPAPAMERHIP*
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mRNA from alignment at tig00025222_pilon:713601..714455+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3706.t1 ID=Gchil3706.t1|Name=Gchil3706.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=855bp|location=Sequence derived from alignment at tig00025222_pilon:713601..714455+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCATCGTTTGAACATGACATTTATGAGTTTGAGGCAGCACTGAAGCA
GGACGGCAATGCAGGCACTCAAAGTGGTGCTTCAGTCTATCGTGTATGCC
CTCAGAGCTGCGCGGCGACAAAAAGCACCCCACTACATGTTTCAAAATCG
ACAAGAGAACTCGCCAACATCGACAAAGTTCTGGATGCCGACGTGCTCGA
TGATTCCTCACTCGACTTATTCGACCCGCCAATCCCCATCATTGGAACGG
ATAAAGAGCACGCGCGCAACATTTACGCAAGTGATGTTGCGATATTTCAG
GCACACGTCAACATCTGGCGCGATCTCTTTCACGGCAACAGCAACTGGAC
ATTTGTAGTGAATTGCAGAGTGACAAGCGTGGAACAAATCCTAAGGCAGC
TCCTGGAGAACAAACTATGGGACCAAATGACCAGCGCACCGAACAGCGAT
GGCTTCGCGTGGGAAATGCTCGCGTTTGCCGTTGCCCAACCACAAGAGGC
AGGAAGCAATGTTCAGCTTGAAACGGTCCACATTGCGCAACAAATTCATA
TCGATGACATTCATGCATACGCTCTCAGCAAGCGAGGTTCCGAGATACTG
CTGTCACACACCAGGGCATTCACGCTGCCACTGCATGAGTTTCTGAGTGC
GGTGCTGGCGCAAGTCACGGCACCGCGAGTAGGAAGAACACACACGACTT
CAATCACACTTTCAAAGCAATGTGAAAAACGTACGAGATTTGTCGCAAGC
GATTTACTGCCTTTCTATCCCCCGTTACACTGGACGTACACCATGTCGAG
TTTTGCGTCACCGCGGACAGCGCCTGCTCCAGCGATGGAAAGGCATATTC
CCTAG
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Coding sequence (CDS) from alignment at tig00025222_pilon:713601..714455+

>Gchil3706.t1 ID=Gchil3706.t1|Name=Gchil3706.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=855bp|location=Sequence derived from alignment at tig00025222_pilon:713601..714455+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCATCGTTTGAACATGACATTTATGAGTTTGAGGCAGCACTGAAGCA
GGACGGCAATGCAGGCACTCAAAGTGGTGCTTCAGTCTATCGTGTATGCC
CTCAGAGCTGCGCGGCGACAAAAAGCACCCCACTACATGTTTCAAAATCG
ACAAGAGAACTCGCCAACATCGACAAAGTTCTGGATGCCGACGTGCTCGA
TGATTCCTCACTCGACTTATTCGACCCGCCAATCCCCATCATTGGAACGG
ATAAAGAGCACGCGCGCAACATTTACGCAAGTGATGTTGCGATATTTCAG
GCACACGTCAACATCTGGCGCGATCTCTTTCACGGCAACAGCAACTGGAC
ATTTGTAGTGAATTGCAGAGTGACAAGCGTGGAACAAATCCTAAGGCAGC
TCCTGGAGAACAAACTATGGGACCAAATGACCAGCGCACCGAACAGCGAT
GGCTTCGCGTGGGAAATGCTCGCGTTTGCCGTTGCCCAACCACAAGAGGC
AGGAAGCAATGTTCAGCTTGAAACGGTCCACATTGCGCAACAAATTCATA
TCGATGACATTCATGCATACGCTCTCAGCAAGCGAGGTTCCGAGATACTG
CTGTCACACACCAGGGCATTCACGCTGCCACTGCATGAGTTTCTGAGTGC
GGTGCTGGCGCAAGTCACGGCACCGCGAGTAGGAAGAACACACACGACTT
CAATCACACTTTCAAAGCAATGTGAAAAACGTACGAGATTTGTCGCAAGC
GATTTACTGCCTTTCTATCCCCCGTTACACTGGACGTACACCATGTCGAG
TTTTGCGTCACCGCGGACAGCGCCTGCTCCAGCGATGGAAAGGCATATTC
CCTAG
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