Gchil3701.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3701.t1
Unique NameGchil3701.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length448
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025222_piloncontigtig00025222_pilon:700961..702304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S237_11V6.2
PFAMsTGT
Max annot lvl35493|Streptophyta
KEGG rclassRC00063
KEGG koko:K00773
KEGG ReactionR03789,R10209
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008479,GO:0009451,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016740,GO:0016757,GO:0016763,GO:0019867,GO:0031090,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046982,GO:0046983,GO:0071704,GO:0090304,GO:0098588,GO:0098805,GO:0101030,GO:0140098,GO:0140101,GO:1901360
Evalue5.32e-172
EggNOG OGsCOG0343@1|root,KOG3908@2759|Eukaryota,37JUI@33090|Viridiplantae,3GBFW@35493|Streptophyta
EC2.4.2.29
DescriptionCatalytic subunit of the queuine tRNA-ribosyltransferase (TGT) that catalyzes the base-exchange of a guanine (G) residue with queuine (Q) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis- dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7-deazaguanosine). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming queuine, allowing a nucleophilic attack on the C1' of the ribose to form the product
COG categoryA
BRITEko00000,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3701Gchil3701Gracilaria chilensis NLEC103_M9 malegenetig00025222_pilon 700961..702304 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3701.t1.start1Gchil3701.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025222_pilon 700961..700963 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3701.t1.CDS1Gchil3701.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 700961..702304 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3701.t1.exon1Gchil3701.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 700961..702304 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3701.t1.stop1Gchil3701.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025222_pilon 702302..702304 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3701.t1Gchil3701.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025222_pilon 700961..702304 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3701.t1 ID=Gchil3701.t1|Name=Gchil3701.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=448bp
MPAQPAPPQPAADLPHQRSQLTPTPVPVPVPVPVPVPAPTPTPAPAPAPC
YYGGERSPALRLELHAVCNKARAATLHLPHHSALTPMFMPVGTQACIKGL
APFQLLEPSVDAQLILANTYHLALRPGGHIVRHHGGVHTFMNWPRAVLTD
SGGFQMVSLLRFSTVTETGVHFQSPVDGTEMLLTPEKSISIQNDIGADII
MALDDVVPATTTGPRVEEACHRTLRWIDRCQAAHARTNQQSLFGIVQGGL
DPRLRQLCCEALVEKDLPGYAIGGLSGGEAKDVFWKIVNQCTDILPKNKP
RYCMGVGYPEDLVVCVALGADMFDCVYPARTARFGTAIVPSGFLKIRHAS
MATDKRPIQHDCPCHTCRNYCRAYLHLLTPNDGTVGAQLLTLHNIAYLTQ
LMKRTRQAILDGTFEPFVQKFMLDLYPHKEYPKWSSDALSSAGIRLL*
back to top

spliced messenger RNA

>Gchil3701.t1 ID=Gchil3701.t1|Name=Gchil3701.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1344bp|location=Sequence derived from alignment at tig00025222_pilon:700961..702304+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTGCGCAGCCGGCGCCGCCGCAGCCGGCCGCAGATCTTCCCCATCA
GCGCTCACAATTAACACCCACGcccgttcccgttcccgttcccgttcccg
tgcccgtacccgCAcccacgcccacgcccgcgcccgcgcccgcgccGTGC
TACTATGGCGGTGAGCGGTCGCCCGCGCTCCGCCTGGAGCTGCATGCCGT
CTGCAACAAGGCGCGCGCCGCCACGCTGCATCTGCCGCACCACTCCGCAC
TCACGCCCATGTTCATGCCCGTGGGCACCCAGGCCTGCATCAAGGGGCTG
GCCCCCTTTCAGCTGCTGGAGCCCTCCGTGGATGCGCAGCTCATCTTGGC
AAACACTTATCACCTGGCGTTGCGCCCCGGTGGTCATATCGTGCGTCATC
ACGGCGGAGTGCATACTTTTATGAATTGGCCCCGCGCCGTGCTTACCGAT
TCGGGCGGATTTCAGATGGTGTCTTTGTTGCGCTTTTCCACTGTCACTGA
GACCGGCGTCCACTTTCAGAGCCCTGTCGACGGCACGGAAATGCTGCTTA
CCCCGGAGAAGAGCATTTCCATCCAGAACGATATCGGTGCTGATATAATC
ATGGCCTTGGATGATGTCGTCCCGGCTACCACCACTGGTCCGCGCGTTGA
AGAGGCATGTCACAGGACGCTTCGCTGGATTGATCGCTGTCAAGCTGCTC
ACGCCCGAACAAACCAACAGAGTTTGTTTGGCATTGTCCAGGGCGGGCTG
GATCCTCGTCTCAGGCAGCTTTGCTGCGAAGCCCTTGTGGAAAAGGATCT
ACCCGGCTATGCCATTGGCGGCCTCTCTGGTGGCGAAGCGAAGGACGTAT
TCTGGAAGATAGTCAACCAGTGCACCGACATCTTGCCAAAGAACAAGCCG
CGCTACTGCATGGGCGTCGGCTATCCTGAGGATCTTGTCGTTTGCGTTGC
GCTTGGTGCCGATATGTTTGATTGCGTATATCCTGCCCGCACCGCCCGCT
TTGGTACCGCCATTGTTCCTTCGGGTTTCCTCAAGATTCGCCATGCATCT
ATGGCTACGGATAAACGCCCCATTCAGCACGATTGTCCGTGTCACACATG
TCGCAACTACTGTCGCGCCTATTTGCACTTGCTCACCCCGAACGATGGAA
CAGTTGGAGCTCAATTGCTTACGCTGCACAACATTGCCTACCTCACCCAA
CTCATGAAGCGCACGAGGCAAGCCATTCTTGATGGCACTTTCGAACCTTT
TGTGCAAAAATTCATGCTTGACCTCTATCCGCATAAAGAATACCCCAAGT
GGTCTAGCGATGCTCTCTCTTCGGCAGGAATACGATTATTATAA
back to top

protein sequence of Gchil3701.t1

>Gchil3701.t1 ID=Gchil3701.t1|Name=Gchil3701.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=448bp
MPAQPAPPQPAADLPHQRSQLTPTPVPVPVPVPVPVPAPTPTPAPAPAPC
YYGGERSPALRLELHAVCNKARAATLHLPHHSALTPMFMPVGTQACIKGL
APFQLLEPSVDAQLILANTYHLALRPGGHIVRHHGGVHTFMNWPRAVLTD
SGGFQMVSLLRFSTVTETGVHFQSPVDGTEMLLTPEKSISIQNDIGADII
MALDDVVPATTTGPRVEEACHRTLRWIDRCQAAHARTNQQSLFGIVQGGL
DPRLRQLCCEALVEKDLPGYAIGGLSGGEAKDVFWKIVNQCTDILPKNKP
RYCMGVGYPEDLVVCVALGADMFDCVYPARTARFGTAIVPSGFLKIRHAS
MATDKRPIQHDCPCHTCRNYCRAYLHLLTPNDGTVGAQLLTLHNIAYLTQ
LMKRTRQAILDGTFEPFVQKFMLDLYPHKEYPKWSSDALSSAGIRLL*
back to top

mRNA from alignment at tig00025222_pilon:700961..702304+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3701.t1 ID=Gchil3701.t1|Name=Gchil3701.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1344bp|location=Sequence derived from alignment at tig00025222_pilon:700961..702304+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCTGCGCAGCCGGCGCCGCCGCAGCCGGCCGCAGATCTTCCCCATCA
GCGCTCACAATTAACACCCACGcccgttcccgttcccgttcccgttcccg
tgcccgtacccgCAcccacgcccacgcccgcgcccgcgcccgcgccGTGC
TACTATGGCGGTGAGCGGTCGCCCGCGCTCCGCCTGGAGCTGCATGCCGT
CTGCAACAAGGCGCGCGCCGCCACGCTGCATCTGCCGCACCACTCCGCAC
TCACGCCCATGTTCATGCCCGTGGGCACCCAGGCCTGCATCAAGGGGCTG
GCCCCCTTTCAGCTGCTGGAGCCCTCCGTGGATGCGCAGCTCATCTTGGC
AAACACTTATCACCTGGCGTTGCGCCCCGGTGGTCATATCGTGCGTCATC
ACGGCGGAGTGCATACTTTTATGAATTGGCCCCGCGCCGTGCTTACCGAT
TCGGGCGGATTTCAGATGGTGTCTTTGTTGCGCTTTTCCACTGTCACTGA
GACCGGCGTCCACTTTCAGAGCCCTGTCGACGGCACGGAAATGCTGCTTA
CCCCGGAGAAGAGCATTTCCATCCAGAACGATATCGGTGCTGATATAATC
ATGGCCTTGGATGATGTCGTCCCGGCTACCACCACTGGTCCGCGCGTTGA
AGAGGCATGTCACAGGACGCTTCGCTGGATTGATCGCTGTCAAGCTGCTC
ACGCCCGAACAAACCAACAGAGTTTGTTTGGCATTGTCCAGGGCGGGCTG
GATCCTCGTCTCAGGCAGCTTTGCTGCGAAGCCCTTGTGGAAAAGGATCT
ACCCGGCTATGCCATTGGCGGCCTCTCTGGTGGCGAAGCGAAGGACGTAT
TCTGGAAGATAGTCAACCAGTGCACCGACATCTTGCCAAAGAACAAGCCG
CGCTACTGCATGGGCGTCGGCTATCCTGAGGATCTTGTCGTTTGCGTTGC
GCTTGGTGCCGATATGTTTGATTGCGTATATCCTGCCCGCACCGCCCGCT
TTGGTACCGCCATTGTTCCTTCGGGTTTCCTCAAGATTCGCCATGCATCT
ATGGCTACGGATAAACGCCCCATTCAGCACGATTGTCCGTGTCACACATG
TCGCAACTACTGTCGCGCCTATTTGCACTTGCTCACCCCGAACGATGGAA
CAGTTGGAGCTCAATTGCTTACGCTGCACAACATTGCCTACCTCACCCAA
CTCATGAAGCGCACGAGGCAAGCCATTCTTGATGGCACTTTCGAACCTTT
TGTGCAAAAATTCATGCTTGACCTCTATCCGCATAAAGAATACCCCAAGT
GGTCTAGCGATGCTCTCTCTTCGGCAGGAATACGATTATTATAA
back to top

Coding sequence (CDS) from alignment at tig00025222_pilon:700961..702304+

>Gchil3701.t1 ID=Gchil3701.t1|Name=Gchil3701.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1344bp|location=Sequence derived from alignment at tig00025222_pilon:700961..702304+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCTGCGCAGCCGGCGCCGCCGCAGCCGGCCGCAGATCTTCCCCATCA
GCGCTCACAATTAACACCCACGcccgttcccgttcccgttcccgttcccg
tgcccgtacccgCAcccacgcccacgcccgcgcccgcgcccgcgccGTGC
TACTATGGCGGTGAGCGGTCGCCCGCGCTCCGCCTGGAGCTGCATGCCGT
CTGCAACAAGGCGCGCGCCGCCACGCTGCATCTGCCGCACCACTCCGCAC
TCACGCCCATGTTCATGCCCGTGGGCACCCAGGCCTGCATCAAGGGGCTG
GCCCCCTTTCAGCTGCTGGAGCCCTCCGTGGATGCGCAGCTCATCTTGGC
AAACACTTATCACCTGGCGTTGCGCCCCGGTGGTCATATCGTGCGTCATC
ACGGCGGAGTGCATACTTTTATGAATTGGCCCCGCGCCGTGCTTACCGAT
TCGGGCGGATTTCAGATGGTGTCTTTGTTGCGCTTTTCCACTGTCACTGA
GACCGGCGTCCACTTTCAGAGCCCTGTCGACGGCACGGAAATGCTGCTTA
CCCCGGAGAAGAGCATTTCCATCCAGAACGATATCGGTGCTGATATAATC
ATGGCCTTGGATGATGTCGTCCCGGCTACCACCACTGGTCCGCGCGTTGA
AGAGGCATGTCACAGGACGCTTCGCTGGATTGATCGCTGTCAAGCTGCTC
ACGCCCGAACAAACCAACAGAGTTTGTTTGGCATTGTCCAGGGCGGGCTG
GATCCTCGTCTCAGGCAGCTTTGCTGCGAAGCCCTTGTGGAAAAGGATCT
ACCCGGCTATGCCATTGGCGGCCTCTCTGGTGGCGAAGCGAAGGACGTAT
TCTGGAAGATAGTCAACCAGTGCACCGACATCTTGCCAAAGAACAAGCCG
CGCTACTGCATGGGCGTCGGCTATCCTGAGGATCTTGTCGTTTGCGTTGC
GCTTGGTGCCGATATGTTTGATTGCGTATATCCTGCCCGCACCGCCCGCT
TTGGTACCGCCATTGTTCCTTCGGGTTTCCTCAAGATTCGCCATGCATCT
ATGGCTACGGATAAACGCCCCATTCAGCACGATTGTCCGTGTCACACATG
TCGCAACTACTGTCGCGCCTATTTGCACTTGCTCACCCCGAACGATGGAA
CAGTTGGAGCTCAATTGCTTACGCTGCACAACATTGCCTACCTCACCCAA
CTCATGAAGCGCACGAGGCAAGCCATTCTTGATGGCACTTTCGAACCTTT
TGTGCAAAAATTCATGCTTGACCTCTATCCGCATAAAGAATACCCCAAGT
GGTCTAGCGATGCTCTCTCTTCGGCAGGAATACGATTATTATAA
back to top