Gchil3697.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3697.t1
Unique Name	Gchil3697.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	319

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00025222_pilon	contig	tig00025222_pilon:693258..694214 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703851.1
Preferred name	ABCB1
PFAMs	ABC_membrane,ABC_tran
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K05657
KEGG TC	3.A.1.201
KEGG Pathway	ko02010,map02010
Evalue	8.84e-70
EggNOG OGs	COG1132@1\|root,KOG0058@2759\|Eukaryota
Description	ATPase activity, coupled to transmembrane movement of substances
COG category	V
BRITE	ko00000,ko00001,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3697	Gchil3697	Gracilaria chilensis NLEC103_M9 male	gene	tig00025222_pilon 693258..694214 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3697.t1.stop1	Gchil3697.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00025222_pilon 693258..693260 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3697.t1.CDS1	Gchil3697.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00025222_pilon 693258..694214 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3697.t1.exon1	Gchil3697.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00025222_pilon 693258..694214 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3697.t1.start1	Gchil3697.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00025222_pilon 694212..694214 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3697.t1	Gchil3697.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00025222_pilon 693258..694214 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00025222_pilon:693258..694214-
coding sequence from alignment at tig00025222_pilon:693258..694214-

mRNA sequence

>Gchil3697.t1 ID=Gchil3697.t1|Name=Gchil3697.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=319bp
MGTSYGQLLRALGAGYRIFEILDRSPEGKSSTIADQDVPEAINGQPPKQR
TVLNSGGLEPGYDATVRFNNVHFSYPTHPNTAVLRGIDLEIRPGEILAIA
GGSGSGKSTLGALLSRLYEPTSGEVRLGRKTIGNLDTAWLRNQIAVVSQE
PVLFDGTVAENIGYALTEDISMEQVHDAAKIAASHDMIMGLPKQYDTRVG
ERGSALSGGQRARTALSRALARRPRVLVLDEHSAALDAESERAVGEALTN
AATELNMAVLTIAHRTSSLRRADRVAVLVDGRVAELDSYETLMRNPNSYL
RRMLVPEIPNKDDQKSTV*

spliced messenger RNA

>Gchil3697.t1 ID=Gchil3697.t1|Name=Gchil3697.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=957bp|location=Sequence derived from alignment at tig00025222_pilon:693258..694214- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCACTTCCTATGGCCAGCTGCTAAGGGCCCTAGGTGCTGGTTACCG
AATATTTGAAATCCTCGACCGTTCCCCTGAAGGGAAATCTTCGACCATTG
CCGACCAGGACGTTCCTGAGGCCATTAACGGACAACCGCCGAAACAAAGA
ACTGTACTAAACTCGGGAGGGTTAGAACCAGGATATGATGCCACTGTCCG
CTTCAATAATGTTCACTTTTCTTATCCAACTCATCCCAACACTGCAGTTC
TTAGGGGGATTGATCTCGAAATCCGCCCTGGGGAAATACTGGCGATTGCG
GGAGGGAGCGGATCTGGGAAGAGTACTCTAGGCGCTCTTCTCTCCCGACT
GTACGAACCCACATCTGGAGAAGTTCGACTCGGGAGAAAAACTATTGGAA
ATCTCGACACGGCATGGCTTCGAAACCAGATTGCAGTTGTCTCTCAGGAA
CCAGTACTGTTTGACGGCACTGTTGCCGAAAACATTGGTTACGCCTTAAC
TGAAGACATTAGTATGGAGCAAGTGCACGATGCGGCGAAGATTGCCGCCA
GTCACGACATGATCATGGGTCTTCCGAAGCAGTACGATACCAGAGTTGGC
GAGCGGGGATCAGCCTTGTCGGGAGGTCAGCGTGCTCGAACTGCTCTTTC
TCGGGCCCTCGCGCGCCGACCTCGAGTGCTTGTGTTAGACGAACATAGCG
CTGCTCTTGATGCGGAATCTGAGCGAGCAGTCGGGGAGGCCCTAACAAAC
GCTGCAACAGAACTCAATATGGCAGTATTAACCATCGCACATCGAACCAG
TTCTTTGCGTCGTGCAGACAGAGTTGCAGTACTTGTAGACGGTAGAGTGG
CTGAGTTGGACTCATACGAAACGCTCATGAGGAACCCCAACTCATATCTC
CGTCGAATGCTGGTGCCAGAGATTCCTAACAAAGATGACCAGAAGTCGAC
CGTATGA

protein sequence of Gchil3697.t1

>Gchil3697.t1 ID=Gchil3697.t1|Name=Gchil3697.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=319bp
MGTSYGQLLRALGAGYRIFEILDRSPEGKSSTIADQDVPEAINGQPPKQR
TVLNSGGLEPGYDATVRFNNVHFSYPTHPNTAVLRGIDLEIRPGEILAIA
GGSGSGKSTLGALLSRLYEPTSGEVRLGRKTIGNLDTAWLRNQIAVVSQE
PVLFDGTVAENIGYALTEDISMEQVHDAAKIAASHDMIMGLPKQYDTRVG
ERGSALSGGQRARTALSRALARRPRVLVLDEHSAALDAESERAVGEALTN
AATELNMAVLTIAHRTSSLRRADRVAVLVDGRVAELDSYETLMRNPNSYL
RRMLVPEIPNKDDQKSTV*

mRNA from alignment at tig00025222_pilon:693258..694214-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3697.t1 ID=Gchil3697.t1|Name=Gchil3697.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=957bp|location=Sequence derived from alignment at tig00025222_pilon:693258..694214- (Gracilaria chilensis NLEC103_M9 male)
ATGGGCACTTCCTATGGCCAGCTGCTAAGGGCCCTAGGTGCTGGTTACCG
AATATTTGAAATCCTCGACCGTTCCCCTGAAGGGAAATCTTCGACCATTG
CCGACCAGGACGTTCCTGAGGCCATTAACGGACAACCGCCGAAACAAAGA
ACTGTACTAAACTCGGGAGGGTTAGAACCAGGATATGATGCCACTGTCCG
CTTCAATAATGTTCACTTTTCTTATCCAACTCATCCCAACACTGCAGTTC
TTAGGGGGATTGATCTCGAAATCCGCCCTGGGGAAATACTGGCGATTGCG
GGAGGGAGCGGATCTGGGAAGAGTACTCTAGGCGCTCTTCTCTCCCGACT
GTACGAACCCACATCTGGAGAAGTTCGACTCGGGAGAAAAACTATTGGAA
ATCTCGACACGGCATGGCTTCGAAACCAGATTGCAGTTGTCTCTCAGGAA
CCAGTACTGTTTGACGGCACTGTTGCCGAAAACATTGGTTACGCCTTAAC
TGAAGACATTAGTATGGAGCAAGTGCACGATGCGGCGAAGATTGCCGCCA
GTCACGACATGATCATGGGTCTTCCGAAGCAGTACGATACCAGAGTTGGC
GAGCGGGGATCAGCCTTGTCGGGAGGTCAGCGTGCTCGAACTGCTCTTTC
TCGGGCCCTCGCGCGCCGACCTCGAGTGCTTGTGTTAGACGAACATAGCG
CTGCTCTTGATGCGGAATCTGAGCGAGCAGTCGGGGAGGCCCTAACAAAC
GCTGCAACAGAACTCAATATGGCAGTATTAACCATCGCACATCGAACCAG
TTCTTTGCGTCGTGCAGACAGAGTTGCAGTACTTGTAGACGGTAGAGTGG
CTGAGTTGGACTCATACGAAACGCTCATGAGGAACCCCAACTCATATCTC
CGTCGAATGCTGGTGCCAGAGATTCCTAACAAAGATGACCAGAAGTCGAC
CGTATGA

Coding sequence (CDS) from alignment at tig00025222_pilon:693258..694214-

>Gchil3697.t1 ID=Gchil3697.t1|Name=Gchil3697.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=957bp|location=Sequence derived from alignment at tig00025222_pilon:693258..694214- (Gracilaria chilensis NLEC103_M9 male)
ATGGGCACTTCCTATGGCCAGCTGCTAAGGGCCCTAGGTGCTGGTTACCG
AATATTTGAAATCCTCGACCGTTCCCCTGAAGGGAAATCTTCGACCATTG
CCGACCAGGACGTTCCTGAGGCCATTAACGGACAACCGCCGAAACAAAGA
ACTGTACTAAACTCGGGAGGGTTAGAACCAGGATATGATGCCACTGTCCG
CTTCAATAATGTTCACTTTTCTTATCCAACTCATCCCAACACTGCAGTTC
TTAGGGGGATTGATCTCGAAATCCGCCCTGGGGAAATACTGGCGATTGCG
GGAGGGAGCGGATCTGGGAAGAGTACTCTAGGCGCTCTTCTCTCCCGACT
GTACGAACCCACATCTGGAGAAGTTCGACTCGGGAGAAAAACTATTGGAA
ATCTCGACACGGCATGGCTTCGAAACCAGATTGCAGTTGTCTCTCAGGAA
CCAGTACTGTTTGACGGCACTGTTGCCGAAAACATTGGTTACGCCTTAAC
TGAAGACATTAGTATGGAGCAAGTGCACGATGCGGCGAAGATTGCCGCCA
GTCACGACATGATCATGGGTCTTCCGAAGCAGTACGATACCAGAGTTGGC
GAGCGGGGATCAGCCTTGTCGGGAGGTCAGCGTGCTCGAACTGCTCTTTC
TCGGGCCCTCGCGCGCCGACCTCGAGTGCTTGTGTTAGACGAACATAGCG
CTGCTCTTGATGCGGAATCTGAGCGAGCAGTCGGGGAGGCCCTAACAAAC
GCTGCAACAGAACTCAATATGGCAGTATTAACCATCGCACATCGAACCAG
TTCTTTGCGTCGTGCAGACAGAGTTGCAGTACTTGTAGACGGTAGAGTGG
CTGAGTTGGACTCATACGAAACGCTCATGAGGAACCCCAACTCATATCTC
CGTCGAATGCTGGTGCCAGAGATTCCTAACAAAGATGACCAGAAGTCGAC
CGTATGA