Gchil3696.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3696.t1
Unique NameGchil3696.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length514
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025222_piloncontigtig00025222_pilon:691514..693055 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3696Gchil3696Gracilaria chilensis NLEC103_M9 malegenetig00025222_pilon 691514..693055 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3696.t1.start1Gchil3696.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025222_pilon 691514..691516 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3696.t1.CDS1Gchil3696.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 691514..693055 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3696.t1.exon1Gchil3696.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 691514..693055 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3696.t1.stop1Gchil3696.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025222_pilon 693053..693055 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3696.t1Gchil3696.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025222_pilon 691514..693055 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3696.t1 ID=Gchil3696.t1|Name=Gchil3696.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=514bp
MSADEGEYRSNDNLPQVLRLRSQGTFLARSSDFTRDAAILHTTEIEVDIQ
GMHEGRTAGREGSAGVGFVSAKTRLDRIFQNDFVTRKSSSKPPPPPPPPP
PQPVVQSKDKDSSASGSEPDQEKNNASSEADESSVSPKTNDNSSSDRLPS
NVVAPPPIEGMYFRSPTRHIKLIKTRLSDLPAIVQNQEPQIRGGVAVYKV
IDDVHRANYGSMVEINAIDYINRLKGTVRDLERQLSVVQGILEQERESSR
HTNRNLRSSIRMGTFMGRRSKDPEHRSSEKFKRSQKGKNGSNASGTTSNA
SSAKVSPSSSQSEHKTPGVRARPPAPPVSFPRGFGFHQERLRDPRPRREE
YLSSPTKPDEERLTRENSVESKGEMVSDLAKDDTKNPSSDLPEDASQSSI
SGDVVNQIQSQHPNTSTDYKRTYHPRKPIQLDRNAAPMPGVEVRRGRRGR
AGRTKSFSGVPTDEVRKVSSYDYHQEKASRAMSMHRESNAEPPQPPPTTK
KSRGVRKLFGLRS*
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spliced messenger RNA

>Gchil3696.t1 ID=Gchil3696.t1|Name=Gchil3696.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1542bp|location=Sequence derived from alignment at tig00025222_pilon:691514..693055+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCTGATGAAGGCGAATACAGAAGCAATGACAATCTCCCACAGGT
GCTCAGGTTGCGCAGTCAAGGCACCTTTCTTGCGAGGAGCTCGGACTTTA
CGCGGGACGCTGCGATTCTCCACACAACCGAAATTGAAGTCGATATTCAA
GGAATGCACGAAGGTCGTACGGCGGGGAGAGAGGGGTCCGCGGGAGTTGG
GTTCGTTTCAGCAAAAACAAGGCTTGATCGGATATTTCAAAATGACTTTG
TTACAAGGAAGTCGTCCTCAAAgccgccgccgccgccaccgccgccacct
ccTCAACCAGTGGTTCAATCGAAGGATAAAGATTCTTCAGCTTCGGGTTC
TGAGCCTGATCAGGAGAAGAACAATGCTTCTTCCGAAGCAGACGAGTCTT
CTGTTAGTCCGAAAACAAATGACAATAGTAGCAGTGACAGACTTCCATCA
AATGTTGTGGCTCCGCCTCCTATCGAGGGTATGTACTTCCGTTCTCCGAC
AAGGCACATAAAACTTATCAAGACCAGGCTTTCAGACCTACCTGCAATTG
TTCAGAATCAGGAACCCCAAATTCGCGGTGGAGTTGCGGTGTATAAGGTA
ATTGACGACGTACACCGAGCAAACTACGGTTCAATGGTCGAGATAAATGC
AATCGACTATATAAACCGGCTCAAAGGTACTGTTCGTGACCTGGAACGTC
AACTGAGCGTGGTGCAAGGAATTTTGGAACAAGAAAGAGAGAGCAGCCGC
CATACGAACAGAAATTTGCGAAGTTCAATCCGCATGGGTACGTTTATGGG
AAGAAGATCAAAAGACCCGGAACATAGATCCTCAGAAAAGTTTAAACGAT
CTCAAAAGGGCAAGAATGGTTCAAATGCAAGCGGAACCACAAGCAATGCC
TCTTCTGCGAAGGTTTCTCCAAGTTCAAGCCAATCAGAACACAAAACCCC
GGGAGTACGGGCAAGACCTCCTGCGCCTCCCGTTAGCTTTCCGCGTGGAT
TTGGGTTTCATCAAGAAAGATTAAGGGATCCCAGACCACGGCGAGAAGAA
TATTTATCTTCTCCCACCAAACCAGATGAAGAAAGACTAACCAGGGAAAA
TAGCGTAGAATCCAAAGGTGAAATGGTGTCGGACCTAGCTAAAGATGATA
CAAAAAATCCTAGTTCAGACCTACCAGAAGACGCGAGTCAAAGTTCAATT
TCTGGTGATGTTGTCAATCAAATACAATCCCAACACCCCAACACATCTAC
TGATTATAAGAGAACTTATCATCCAAGAAAGCCAATTCAGCTAGATCGAA
ATGCTGCACCAATGCCCGGAGTTGAGGTACGGAGGGGTAGACGCGGAAGA
GCCGGTCGGACGAAGAGTTTTTCGGGTGTCCCTACCGATGAAGTCCGAAA
GGTGTCCTCCTACGATTATCATCAAGAAAAGGCCTCAAGAGCGATGTCTA
TGCACCGTGAATCAAACGCTGAACCACCACAGCCACCACCAACTACAAAG
AAGAGTAGAGGGGTTCGTAAGCTTTTTGGGCTCAGATCCTGA
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protein sequence of Gchil3696.t1

>Gchil3696.t1 ID=Gchil3696.t1|Name=Gchil3696.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=514bp
MSADEGEYRSNDNLPQVLRLRSQGTFLARSSDFTRDAAILHTTEIEVDIQ
GMHEGRTAGREGSAGVGFVSAKTRLDRIFQNDFVTRKSSSKPPPPPPPPP
PQPVVQSKDKDSSASGSEPDQEKNNASSEADESSVSPKTNDNSSSDRLPS
NVVAPPPIEGMYFRSPTRHIKLIKTRLSDLPAIVQNQEPQIRGGVAVYKV
IDDVHRANYGSMVEINAIDYINRLKGTVRDLERQLSVVQGILEQERESSR
HTNRNLRSSIRMGTFMGRRSKDPEHRSSEKFKRSQKGKNGSNASGTTSNA
SSAKVSPSSSQSEHKTPGVRARPPAPPVSFPRGFGFHQERLRDPRPRREE
YLSSPTKPDEERLTRENSVESKGEMVSDLAKDDTKNPSSDLPEDASQSSI
SGDVVNQIQSQHPNTSTDYKRTYHPRKPIQLDRNAAPMPGVEVRRGRRGR
AGRTKSFSGVPTDEVRKVSSYDYHQEKASRAMSMHRESNAEPPQPPPTTK
KSRGVRKLFGLRS*
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mRNA from alignment at tig00025222_pilon:691514..693055+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3696.t1 ID=Gchil3696.t1|Name=Gchil3696.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1542bp|location=Sequence derived from alignment at tig00025222_pilon:691514..693055+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGCTGATGAAGGCGAATACAGAAGCAATGACAATCTCCCACAGGT
GCTCAGGTTGCGCAGTCAAGGCACCTTTCTTGCGAGGAGCTCGGACTTTA
CGCGGGACGCTGCGATTCTCCACACAACCGAAATTGAAGTCGATATTCAA
GGAATGCACGAAGGTCGTACGGCGGGGAGAGAGGGGTCCGCGGGAGTTGG
GTTCGTTTCAGCAAAAACAAGGCTTGATCGGATATTTCAAAATGACTTTG
TTACAAGGAAGTCGTCCTCAAAgccgccgccgccgccaccgccgccacct
ccTCAACCAGTGGTTCAATCGAAGGATAAAGATTCTTCAGCTTCGGGTTC
TGAGCCTGATCAGGAGAAGAACAATGCTTCTTCCGAAGCAGACGAGTCTT
CTGTTAGTCCGAAAACAAATGACAATAGTAGCAGTGACAGACTTCCATCA
AATGTTGTGGCTCCGCCTCCTATCGAGGGTATGTACTTCCGTTCTCCGAC
AAGGCACATAAAACTTATCAAGACCAGGCTTTCAGACCTACCTGCAATTG
TTCAGAATCAGGAACCCCAAATTCGCGGTGGAGTTGCGGTGTATAAGGTA
ATTGACGACGTACACCGAGCAAACTACGGTTCAATGGTCGAGATAAATGC
AATCGACTATATAAACCGGCTCAAAGGTACTGTTCGTGACCTGGAACGTC
AACTGAGCGTGGTGCAAGGAATTTTGGAACAAGAAAGAGAGAGCAGCCGC
CATACGAACAGAAATTTGCGAAGTTCAATCCGCATGGGTACGTTTATGGG
AAGAAGATCAAAAGACCCGGAACATAGATCCTCAGAAAAGTTTAAACGAT
CTCAAAAGGGCAAGAATGGTTCAAATGCAAGCGGAACCACAAGCAATGCC
TCTTCTGCGAAGGTTTCTCCAAGTTCAAGCCAATCAGAACACAAAACCCC
GGGAGTACGGGCAAGACCTCCTGCGCCTCCCGTTAGCTTTCCGCGTGGAT
TTGGGTTTCATCAAGAAAGATTAAGGGATCCCAGACCACGGCGAGAAGAA
TATTTATCTTCTCCCACCAAACCAGATGAAGAAAGACTAACCAGGGAAAA
TAGCGTAGAATCCAAAGGTGAAATGGTGTCGGACCTAGCTAAAGATGATA
CAAAAAATCCTAGTTCAGACCTACCAGAAGACGCGAGTCAAAGTTCAATT
TCTGGTGATGTTGTCAATCAAATACAATCCCAACACCCCAACACATCTAC
TGATTATAAGAGAACTTATCATCCAAGAAAGCCAATTCAGCTAGATCGAA
ATGCTGCACCAATGCCCGGAGTTGAGGTACGGAGGGGTAGACGCGGAAGA
GCCGGTCGGACGAAGAGTTTTTCGGGTGTCCCTACCGATGAAGTCCGAAA
GGTGTCCTCCTACGATTATCATCAAGAAAAGGCCTCAAGAGCGATGTCTA
TGCACCGTGAATCAAACGCTGAACCACCACAGCCACCACCAACTACAAAG
AAGAGTAGAGGGGTTCGTAAGCTTTTTGGGCTCAGATCCTGA
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Coding sequence (CDS) from alignment at tig00025222_pilon:691514..693055+

>Gchil3696.t1 ID=Gchil3696.t1|Name=Gchil3696.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1542bp|location=Sequence derived from alignment at tig00025222_pilon:691514..693055+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGCTGATGAAGGCGAATACAGAAGCAATGACAATCTCCCACAGGT
GCTCAGGTTGCGCAGTCAAGGCACCTTTCTTGCGAGGAGCTCGGACTTTA
CGCGGGACGCTGCGATTCTCCACACAACCGAAATTGAAGTCGATATTCAA
GGAATGCACGAAGGTCGTACGGCGGGGAGAGAGGGGTCCGCGGGAGTTGG
GTTCGTTTCAGCAAAAACAAGGCTTGATCGGATATTTCAAAATGACTTTG
TTACAAGGAAGTCGTCCTCAAAgccgccgccgccgccaccgccgccacct
ccTCAACCAGTGGTTCAATCGAAGGATAAAGATTCTTCAGCTTCGGGTTC
TGAGCCTGATCAGGAGAAGAACAATGCTTCTTCCGAAGCAGACGAGTCTT
CTGTTAGTCCGAAAACAAATGACAATAGTAGCAGTGACAGACTTCCATCA
AATGTTGTGGCTCCGCCTCCTATCGAGGGTATGTACTTCCGTTCTCCGAC
AAGGCACATAAAACTTATCAAGACCAGGCTTTCAGACCTACCTGCAATTG
TTCAGAATCAGGAACCCCAAATTCGCGGTGGAGTTGCGGTGTATAAGGTA
ATTGACGACGTACACCGAGCAAACTACGGTTCAATGGTCGAGATAAATGC
AATCGACTATATAAACCGGCTCAAAGGTACTGTTCGTGACCTGGAACGTC
AACTGAGCGTGGTGCAAGGAATTTTGGAACAAGAAAGAGAGAGCAGCCGC
CATACGAACAGAAATTTGCGAAGTTCAATCCGCATGGGTACGTTTATGGG
AAGAAGATCAAAAGACCCGGAACATAGATCCTCAGAAAAGTTTAAACGAT
CTCAAAAGGGCAAGAATGGTTCAAATGCAAGCGGAACCACAAGCAATGCC
TCTTCTGCGAAGGTTTCTCCAAGTTCAAGCCAATCAGAACACAAAACCCC
GGGAGTACGGGCAAGACCTCCTGCGCCTCCCGTTAGCTTTCCGCGTGGAT
TTGGGTTTCATCAAGAAAGATTAAGGGATCCCAGACCACGGCGAGAAGAA
TATTTATCTTCTCCCACCAAACCAGATGAAGAAAGACTAACCAGGGAAAA
TAGCGTAGAATCCAAAGGTGAAATGGTGTCGGACCTAGCTAAAGATGATA
CAAAAAATCCTAGTTCAGACCTACCAGAAGACGCGAGTCAAAGTTCAATT
TCTGGTGATGTTGTCAATCAAATACAATCCCAACACCCCAACACATCTAC
TGATTATAAGAGAACTTATCATCCAAGAAAGCCAATTCAGCTAGATCGAA
ATGCTGCACCAATGCCCGGAGTTGAGGTACGGAGGGGTAGACGCGGAAGA
GCCGGTCGGACGAAGAGTTTTTCGGGTGTCCCTACCGATGAAGTCCGAAA
GGTGTCCTCCTACGATTATCATCAAGAAAAGGCCTCAAGAGCGATGTCTA
TGCACCGTGAATCAAACGCTGAACCACCACAGCCACCACCAACTACAAAG
AAGAGTAGAGGGGTTCGTAAGCTTTTTGGGCTCAGATCCTGA
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