Gchil3692.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3692.t1
Unique NameGchil3692.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length165
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025222_piloncontigtig00025222_pilon:676681..677175 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1385935.N836_08230
Preferred namepetC
PFAMsCytB6-F_Fe-S,Rieske
Max annot lvl1117|Cyanobacteria
KEGG rclassRC01002
KEGG koko:K02636
KEGG ReactionR03817,R08409
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00162
Evalue4.71e-69
EggNOG OGsCOG0723@1|root,COG0723@2|Bacteria,1G03Q@1117|Cyanobacteria,1H9D7@1150|Oscillatoriales
EC1.10.9.1
DescriptionComponent of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions
COG categoryC
BRITEko00000,ko00001,ko00002,ko00194,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3692Gchil3692Gracilaria chilensis NLEC103_M9 malegenetig00025222_pilon 676681..677175 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3692.t1.stop1Gchil3692.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025222_pilon 676681..676683 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3692.t1.CDS1Gchil3692.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 676681..677175 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3692.t1.exon1Gchil3692.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 676681..677175 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3692.t1.start1Gchil3692.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025222_pilon 677173..677175 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3692.t1Gchil3692.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025222_pilon 676681..677175 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3692.t1 ID=Gchil3692.t1|Name=Gchil3692.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=165bp
MNLLLAGSTGAVALGVLYPLGSFFVPKSSGSAGAGVIAKDALGNNVRKAD
YIKSHPAASRELVQGLKGDATYLIVTDDKSDLEFYALNAVCTHLGCVVPW
NQAEKKFKCPCHGSQYAPTGAVVRGPAPLPLALERVETDESDNVVLKSWK
EQDFRTGEAPWWNF*
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spliced messenger RNA

>Gchil3692.t1 ID=Gchil3692.t1|Name=Gchil3692.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=495bp|location=Sequence derived from alignment at tig00025222_pilon:676681..677175- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCTGCTCCTAGCGGGCAGCACGGGCGCCGTCGCCCTCGGCGTGCT
CTACCCGCTAGGCTCTTTCTTCGTACCCAAATCCTCTGGCAGCGCCGGCG
CGGGCGTCATCGCCAAGGATGCCTTGGGAAACAACGTCAGGAAGGCCGAC
TACATCAAGTCGCACCCGGCCGCTTCGCGCGAGCTCGTCCAGGGTCTCAA
GGGCGATGCCACCTACCTCATCGTCACCGACGACAAGTCCGACCTCGAGT
TCTACGCCCTAAACGCCGTGTGCACCCATCTGGGCTGCGTCGTACCGTGG
AACCAGGCCGAGAAAAAGTTCAAGTGTCCCTGTCACGGGTCGCAGTACGC
CCCGACCGGTGCCGTCGTGCGCGGACCCGCCCCGCTCCCGCTCGCCCTCG
AGCGCGTCGAAACCGACGAAAGCGACAACGTCGTCCTCAAGTCGTGGAAG
GAACAGGACTTCCGCACCGGTGAGGCCCCTTGGTGGAACTTTTAG
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protein sequence of Gchil3692.t1

>Gchil3692.t1 ID=Gchil3692.t1|Name=Gchil3692.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=165bp
MNLLLAGSTGAVALGVLYPLGSFFVPKSSGSAGAGVIAKDALGNNVRKAD
YIKSHPAASRELVQGLKGDATYLIVTDDKSDLEFYALNAVCTHLGCVVPW
NQAEKKFKCPCHGSQYAPTGAVVRGPAPLPLALERVETDESDNVVLKSWK
EQDFRTGEAPWWNF*
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mRNA from alignment at tig00025222_pilon:676681..677175-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3692.t1 ID=Gchil3692.t1|Name=Gchil3692.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=495bp|location=Sequence derived from alignment at tig00025222_pilon:676681..677175- (Gracilaria chilensis NLEC103_M9 male)
ATGAACCTGCTCCTAGCGGGCAGCACGGGCGCCGTCGCCCTCGGCGTGCT
CTACCCGCTAGGCTCTTTCTTCGTACCCAAATCCTCTGGCAGCGCCGGCG
CGGGCGTCATCGCCAAGGATGCCTTGGGAAACAACGTCAGGAAGGCCGAC
TACATCAAGTCGCACCCGGCCGCTTCGCGCGAGCTCGTCCAGGGTCTCAA
GGGCGATGCCACCTACCTCATCGTCACCGACGACAAGTCCGACCTCGAGT
TCTACGCCCTAAACGCCGTGTGCACCCATCTGGGCTGCGTCGTACCGTGG
AACCAGGCCGAGAAAAAGTTCAAGTGTCCCTGTCACGGGTCGCAGTACGC
CCCGACCGGTGCCGTCGTGCGCGGACCCGCCCCGCTCCCGCTCGCCCTCG
AGCGCGTCGAAACCGACGAAAGCGACAACGTCGTCCTCAAGTCGTGGAAG
GAACAGGACTTCCGCACCGGTGAGGCCCCTTGGTGGAACTTTTAG
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Coding sequence (CDS) from alignment at tig00025222_pilon:676681..677175-

>Gchil3692.t1 ID=Gchil3692.t1|Name=Gchil3692.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=495bp|location=Sequence derived from alignment at tig00025222_pilon:676681..677175- (Gracilaria chilensis NLEC103_M9 male)
ATGAACCTGCTCCTAGCGGGCAGCACGGGCGCCGTCGCCCTCGGCGTGCT
CTACCCGCTAGGCTCTTTCTTCGTACCCAAATCCTCTGGCAGCGCCGGCG
CGGGCGTCATCGCCAAGGATGCCTTGGGAAACAACGTCAGGAAGGCCGAC
TACATCAAGTCGCACCCGGCCGCTTCGCGCGAGCTCGTCCAGGGTCTCAA
GGGCGATGCCACCTACCTCATCGTCACCGACGACAAGTCCGACCTCGAGT
TCTACGCCCTAAACGCCGTGTGCACCCATCTGGGCTGCGTCGTACCGTGG
AACCAGGCCGAGAAAAAGTTCAAGTGTCCCTGTCACGGGTCGCAGTACGC
CCCGACCGGTGCCGTCGTGCGCGGACCCGCCCCGCTCCCGCTCGCCCTCG
AGCGCGTCGAAACCGACGAAAGCGACAACGTCGTCCTCAAGTCGTGGAAG
GAACAGGACTTCCGCACCGGTGAGGCCCCTTGGTGGAACTTTTAG
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