Gchil369.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil369.t1
Unique NameGchil369.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length178
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000212_piloncontigtig00000212_pilon:644412..645066 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7G189
Preferred nameH1
PFAMsLinker_histone
Max annot lvl2759|Eukaryota
KEGG koko:K11275
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044464
Evalue2.15e-10
EggNOG OGs2CYYI@1|root,2S79K@2759|Eukaryota
DescriptionDomain in histone families 1 and 5
COG categoryB
BRITEko00000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil369Gchil369Gracilaria chilensis NLEC103_M9 malegenetig00000212_pilon 644412..645066 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil369.t1Gchil369.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000212_pilon 644412..645066 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil369.t1.start1Gchil369.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000212_pilon 644412..644414 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil369.t1.CDS1Gchil369.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000212_pilon 644412..644759 +
Gchil369.t1.CDS2Gchil369.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000212_pilon 644881..645066 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil369.t1.exon1Gchil369.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000212_pilon 644412..644759 +
Gchil369.t1.exon2Gchil369.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000212_pilon 644881..645066 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil369.t1.intron1Gchil369.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000212_pilon 644760..644880 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil369.t1.stop1Gchil369.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000212_pilon 645064..645066 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil369.t1 ID=Gchil369.t1|Name=Gchil369.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=178bp
MPAARKAVAPKPTYKVMVTESIKDLADRTGSSVQAITKQLRAKYNIDINK
PALIKAIKKGVETGDLVQIKASYKLAKKAPVLKKKTTVVVKPTKPTVKAT
TTTTTTTTTTTAAKKKATPSAAKKAIKPKKSLSKTRSTRTVVTTASAVKK
RTTKRSAAARKDASKMAALGKKRSAKK*
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spliced messenger RNA

>Gchil369.t1 ID=Gchil369.t1|Name=Gchil369.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=534bp|location=Sequence derived from alignment at tig00000212_pilon:644412..645066+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGCAGCAAGGAAGGCCGTTGCGCCGAAGCCCACTTACAAGGTCAT
GGTCACCGAGAGTATAAAGGACTTGGCCGACCGCACTGGCTCCTCCGTGC
AGGCCATCACCAAGCAGTTGAGGGCAAAATACAACATCGATATCAACAAG
CCCGCGCTCATCAAGGCCATCAAGAAGGGCGTGGAGACAGGCGACTTGGT
TCAGATAAAGGCCAGTTACAAACTGGCTAAGAAGGCTCCCGTCCTCAAGA
AGAAGACCACCGTCGTTGTCAAGCCCACCAAGCccaccgtcaaggccact
actactacgactaccaccaccaccaccaccaccgctgccaAGAAAAAGGC
CACACCATCAGCCGCGAAAAAGGCGATCAAGCCCAAAAAGTCCTTGTCAA
AGACGCGTAGCACGCGCACCGTGGTCACCACAGCAAGCGCGGTGAAAAAG
AGAACCACCAAGAGGAGCGCAGCCGCCAGGAAGGACGCGTCCAAGATGGC
GGCACTGGGCAAGAAAAGAAGCGCCAAAAAGTGA
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protein sequence of Gchil369.t1

>Gchil369.t1 ID=Gchil369.t1|Name=Gchil369.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=178bp
MPAARKAVAPKPTYKVMVTESIKDLADRTGSSVQAITKQLRAKYNIDINK
PALIKAIKKGVETGDLVQIKASYKLAKKAPVLKKKTTVVVKPTKPTVKAT
TTTTTTTTTTTAAKKKATPSAAKKAIKPKKSLSKTRSTRTVVTTASAVKK
RTTKRSAAARKDASKMAALGKKRSAKK*
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mRNA from alignment at tig00000212_pilon:644412..645066+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil369.t1 ID=Gchil369.t1|Name=Gchil369.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=655bp|location=Sequence derived from alignment at tig00000212_pilon:644412..645066+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCCGCAGCAAGGAAGGCCGTTGCGCCGAAGCCCACTTACAAGGTCAT
GGTCACCGAGAGTATAAAGGACTTGGCCGACCGCACTGGCTCCTCCGTGC
AGGCCATCACCAAGCAGTTGAGGGCAAAATACAACATCGATATCAACAAG
CCCGCGCTCATCAAGGCCATCAAGAAGGGCGTGGAGACAGGCGACTTGGT
TCAGATAAAGGCCAGTTACAAACTGGCTAAGAAGGCTCCCGTCCTCAAGA
AGAAGACCACCGTCGTTGTCAAGCCCACCAAGCccaccgtcaaggccact
actactacgactaccaccaccaccaccaccaccgctgccaAGAAAAAGGT
ATGCCACCACTCCACCACACCTCCGCAACCGGccccccccccccctcccc
cAAATCCCGCTAACTATATATATATATATGttttttttttttttgttatt
tttttctttCCATTTTCAGGCCACACCATCAGCCGCGAAAAAGGCGATCA
AGCCCAAAAAGTCCTTGTCAAAGACGCGTAGCACGCGCACCGTGGTCACC
ACAGCAAGCGCGGTGAAAAAGAGAACCACCAAGAGGAGCGCAGCCGCCAG
GAAGGACGCGTCCAAGATGGCGGCACTGGGCAAGAAAAGAAGCGCCAAAA
AGTGA
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Coding sequence (CDS) from alignment at tig00000212_pilon:644412..645066+

>Gchil369.t1 ID=Gchil369.t1|Name=Gchil369.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=534bp|location=Sequence derived from alignment at tig00000212_pilon:644412..645066+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCCGCAGCAAGGAAGGCCGTTGCGCCGAAGCCCACTTACAAGGTCAT
GGTCACCGAGAGTATAAAGGACTTGGCCGACCGCACTGGCTCCTCCGTGC
AGGCCATCACCAAGCAGTTGAGGGCAAAATACAACATCGATATCAACAAG
CCCGCGCTCATCAAGGCCATCAAGAAGGGCGTGGAGACAGGCGACTTGGT
TCAGATAAAGGCCAGTTACAAACTGGCTAAGAAGGCTCCCGTCCTCAAGA
AGAAGACCACCGTCGTTGTCAAGCCCACCAAGCccaccgtcaaggccact
actactacgactaccaccaccaccaccaccaccgctgccaAGAAAAAGGC
CACACCATCAGCCGCGAAAAAGGCGATCAAGCCCAAAAAGTCCTTGTCAA
AGACGCGTAGCACGCGCACCGTGGTCACCACAGCAAGCGCGGTGAAAAAG
AGAACCACCAAGAGGAGCGCAGCCGCCAGGAAGGACGCGTCCAAGATGGC
GGCACTGGGCAAGAAAAGAAGCGCCAAAAAGTGA
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