Gchil3686.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3686.t1
Unique NameGchil3686.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length259
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025222_piloncontigtig00025222_pilon:596301..597313 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28532.XP_010522483.1
PFAMsETF
Max annot lvl35493|Streptophyta
KEGG koko:K03521
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0006082,GO:0006091,GO:0006520,GO:0006551,GO:0006552,GO:0006725,GO:0006778,GO:0006787,GO:0006807,GO:0008150,GO:0008152,GO:0009055,GO:0009056,GO:0009063,GO:0009081,GO:0009083,GO:0009987,GO:0015994,GO:0015996,GO:0016054,GO:0016491,GO:0019439,GO:0019752,GO:0022900,GO:0033013,GO:0033015,GO:0034641,GO:0042440,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046149,GO:0046395,GO:0046483,GO:0046700,GO:0051186,GO:0051187,GO:0055114,GO:0071704,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606
Evalue1.35e-99
EggNOG OGsCOG2086@1|root,KOG3180@2759|Eukaryota,37KN8@33090|Viridiplantae,3G78M@35493|Streptophyta,3HS0W@3699|Brassicales
Descriptionelectron transfer flavoprotein
COG categoryC
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3686Gchil3686Gracilaria chilensis NLEC103_M9 malegenetig00025222_pilon 596301..597313 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3686.t1Gchil3686.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025222_pilon 596301..597313 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3686.t1.start1Gchil3686.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025222_pilon 596301..596303 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3686.t1.CDS1Gchil3686.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 596301..596735 +
Gchil3686.t1.CDS2Gchil3686.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 596972..597313 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3686.t1.exon1Gchil3686.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 596301..596735 +
Gchil3686.t1.exon2Gchil3686.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 596972..597313 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3686.t1.intron1Gchil3686.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00025222_pilon 596736..596971 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3686.t1.stop1Gchil3686.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025222_pilon 597311..597313 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3686.t1 ID=Gchil3686.t1|Name=Gchil3686.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=259bp
MAGRKILVGVKRVVDYAVKIRVKPDGSGVDTSSVKMSMNPFCEIAVEEAL
RLREANKAAEVIAVSIGPKKSVDTLRVALAMGADKAIHVSVSEKQADLQP
LAIASILKHLVNEQNPDMVILGKQSIDGDNNQTGQMLAGMLGWPQGTFAS
NVDVESGSLSAINVTREVDGGLETVELKLPAVVTCDLRLNKPRFTSLSNT
MKAKKKKVETIDVNSLGIELESKVQTLSVVEPPKRPPGIIVKDVDELVEK
LHTEAKVI*
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spliced messenger RNA

>Gchil3686.t1 ID=Gchil3686.t1|Name=Gchil3686.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=777bp|location=Sequence derived from alignment at tig00025222_pilon:596301..597313+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGGTCGTAAAATTCTTGTTGGAGTCAAAAGAGTCGTCGACTATGC
GGTCAAGATTCGTGTGAAGCCAGATGGATCGGGAGTTGACACATCGAGTG
TCAAGATGTCAATGAACCCCTTCTGCGAAATCGCCGTGGAGGAAGCTCTT
CGTCTTCGGGAAGCAAACAAGGCGGCAGAAGTCATTGCTGTGTCAATTGG
TCCGAAGAAATCAGTGGATACTTTGCGAGTAGCATTGGCGATGGGCGCTG
ACAAAGCAATTCACGTTTCTGTCTCGGAGAAGCAAGCAGATCTTCAACCC
CTTGCAATCGCGTCAATACTGAAGCATTTAGTCAATGAACAAAACCCCGA
TATGGTTATTCTCGGGAAACAAAGTATCGACGGCGACAACAACCAAACAG
GTCAGATGCTCGCTGGAATGCTCGGTTGGCCGCAGGGGACATTTGCAAGC
AATGTCGACGTTGAGAGTGGTTCCCTCTCAGCGATTAATGTTACTCGAGA
AGTAGATGGTGGGCTGGAGACGGTAGAGTTGAAACTGCCCGCTGTCGTGA
CTTGCGACTTGCGCTTAAACAAGCCAAGATTTACATCGTTGTCAAACACG
ATGAAAGCCAAAAAGAAGAAGGTAGAAACCATTGATGTCAATTCTTTAGG
CATTGAGCTTGAATCAAAGGTGCAGACGCTTTCGGTCGTTGAGCCTCCAA
AACGTCCTCCGGGGATCATCGTAAAGGATGTAGATGAACTTGTCGAGAAG
CTCCACACAGAGGCCAAAGTAATATAG
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protein sequence of Gchil3686.t1

>Gchil3686.t1 ID=Gchil3686.t1|Name=Gchil3686.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=259bp
MAGRKILVGVKRVVDYAVKIRVKPDGSGVDTSSVKMSMNPFCEIAVEEAL
RLREANKAAEVIAVSIGPKKSVDTLRVALAMGADKAIHVSVSEKQADLQP
LAIASILKHLVNEQNPDMVILGKQSIDGDNNQTGQMLAGMLGWPQGTFAS
NVDVESGSLSAINVTREVDGGLETVELKLPAVVTCDLRLNKPRFTSLSNT
MKAKKKKVETIDVNSLGIELESKVQTLSVVEPPKRPPGIIVKDVDELVEK
LHTEAKVI*
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mRNA from alignment at tig00025222_pilon:596301..597313+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3686.t1 ID=Gchil3686.t1|Name=Gchil3686.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1013bp|location=Sequence derived from alignment at tig00025222_pilon:596301..597313+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGGTCGTAAAATTCTTGTTGGAGTCAAAAGAGTCGTCGACTATGC
GGTCAAGATTCGTGTGAAGCCAGATGGATCGGGAGTTGACACATCGAGTG
TCAAGATGTCAATGAACCCCTTCTGCGAAATCGCCGTGGAGGAAGCTCTT
CGTCTTCGGGAAGCAAACAAGGCGGCAGAAGTCATTGCTGTGTCAATTGG
TCCGAAGAAATCAGTGGATACTTTGCGAGTAGCATTGGCGATGGGCGCTG
ACAAAGCAATTCACGTTTCTGTCTCGGAGAAGCAAGCAGATCTTCAACCC
CTTGCAATCGCGTCAATACTGAAGCATTTAGTCAATGAACAAAACCCCGA
TATGGTTATTCTCGGGAAACAAAGTATCGACGGCGACAACAACCAAACAG
GTCAGATGCTCGCTGGAATGCTCGGTTGGCCGCAGGTAAGTCTAGTCAAA
GCTTTCTATGTTGTTCTCACTGCTGTGGGGTGATGATATCACTTCCATCA
CGACGGTCTTATGATAGTGCCGAACTTAACCCTCGAGCCAAACCCCTGAT
TCGAAACGGATTCGGATATTCCGATATCTGACCGCAGCATACGCCAGTCT
GAGTGATTGGCGTAGAACCAGACCAAATTTCGATCTAACCCTCCAATATG
TACCTTTCCTATCTTCTGCAGGGGACATTTGCAAGCAATGTCGACGTTGA
GAGTGGTTCCCTCTCAGCGATTAATGTTACTCGAGAAGTAGATGGTGGGC
TGGAGACGGTAGAGTTGAAACTGCCCGCTGTCGTGACTTGCGACTTGCGC
TTAAACAAGCCAAGATTTACATCGTTGTCAAACACGATGAAAGCCAAAAA
GAAGAAGGTAGAAACCATTGATGTCAATTCTTTAGGCATTGAGCTTGAAT
CAAAGGTGCAGACGCTTTCGGTCGTTGAGCCTCCAAAACGTCCTCCGGGG
ATCATCGTAAAGGATGTAGATGAACTTGTCGAGAAGCTCCACACAGAGGC
CAAAGTAATATAG
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Coding sequence (CDS) from alignment at tig00025222_pilon:596301..597313+

>Gchil3686.t1 ID=Gchil3686.t1|Name=Gchil3686.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=777bp|location=Sequence derived from alignment at tig00025222_pilon:596301..597313+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGGTCGTAAAATTCTTGTTGGAGTCAAAAGAGTCGTCGACTATGC
GGTCAAGATTCGTGTGAAGCCAGATGGATCGGGAGTTGACACATCGAGTG
TCAAGATGTCAATGAACCCCTTCTGCGAAATCGCCGTGGAGGAAGCTCTT
CGTCTTCGGGAAGCAAACAAGGCGGCAGAAGTCATTGCTGTGTCAATTGG
TCCGAAGAAATCAGTGGATACTTTGCGAGTAGCATTGGCGATGGGCGCTG
ACAAAGCAATTCACGTTTCTGTCTCGGAGAAGCAAGCAGATCTTCAACCC
CTTGCAATCGCGTCAATACTGAAGCATTTAGTCAATGAACAAAACCCCGA
TATGGTTATTCTCGGGAAACAAAGTATCGACGGCGACAACAACCAAACAG
GTCAGATGCTCGCTGGAATGCTCGGTTGGCCGCAGGGGACATTTGCAAGC
AATGTCGACGTTGAGAGTGGTTCCCTCTCAGCGATTAATGTTACTCGAGA
AGTAGATGGTGGGCTGGAGACGGTAGAGTTGAAACTGCCCGCTGTCGTGA
CTTGCGACTTGCGCTTAAACAAGCCAAGATTTACATCGTTGTCAAACACG
ATGAAAGCCAAAAAGAAGAAGGTAGAAACCATTGATGTCAATTCTTTAGG
CATTGAGCTTGAATCAAAGGTGCAGACGCTTTCGGTCGTTGAGCCTCCAA
AACGTCCTCCGGGGATCATCGTAAAGGATGTAGATGAACTTGTCGAGAAG
CTCCACACAGAGGCCAAAGTAATATAG
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