Gchil3682.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3682.t1
Unique NameGchil3682.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length210
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025222_piloncontigtig00025222_pilon:587509..588138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707513.1
PFAMsRhodanese,Rotamase,Rotamase_3
Max annot lvl2759|Eukaryota
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009536,GO:0009719,GO:0009725,GO:0009735,GO:0010033,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0050896
Evalue1.65e-74
EggNOG OGsCOG0476@1|root,KOG2017@2759|Eukaryota
Descriptionthiosulfate sulfurtransferase activity
COG categoryH
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3682Gchil3682Gracilaria chilensis NLEC103_M9 malegenetig00025222_pilon 587509..588138 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3682.t1.start1Gchil3682.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025222_pilon 587509..587511 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3682.t1.CDS1Gchil3682.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 587509..588138 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3682.t1.exon1Gchil3682.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 587509..588138 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3682.t1.stop1Gchil3682.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025222_pilon 588136..588138 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3682.t1Gchil3682.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025222_pilon 587509..588138 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3682.t1 ID=Gchil3682.t1|Name=Gchil3682.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=210bp
MVRARHILVESEEMVDAIKQQIDDGKGNFAELAGLVSTCSSKARGGDLGW
FGRNTMVKQFEEAAFSNPPGSIVKVNSEFGWHLVKVEDHGVASRAITVDE
YERRFGESGSDDPSSVQLIDCREVGELELARLPNFLNLPMGEYGSWAEEF
ESGELGLEKGKETIVMCHHGVRSANFCSFLSQQGFTNVRNLIGGIDAYSR
KISSSVPQY*
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spliced messenger RNA

>Gchil3682.t1 ID=Gchil3682.t1|Name=Gchil3682.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=630bp|location=Sequence derived from alignment at tig00025222_pilon:587509..588138+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCGAGCCAGACATATCCTGGTTGAAAGCGAAGAAATGGTTGACGC
AATTAAGCAGCAGATAGATGACGGAAAAGGAAATTTTGCGGAACTCGCAG
GGCTTGTTAGTACTTGTTCATCGAAAGCCCGTGGTGGAGATCTCGGCTGG
TTCGGGCGAAATACAATGGTCAAGCAATTCGAGGAAGCGGCGTTTTCGAA
TCCGCCGGGGTCAATTGTAAAGGTAAATAGTGAATTCGGATGGCACCTCG
TCAAAGTCGAGGATCATGGTGTGGCTTCAAGGGCCATCACTGTTGACGAA
TATGAGAGAAGATTTGGAGAGAGCGGCTCTGACGACCCGTCAAGCGTTCA
ACTTATTGACTGCAGAGAAGTGGGAGAACTTGAATTGGCCAGACTGCCCA
ACTTCCTGAACTTACCGATGGGAGAGTACGGGTCATGGGCTGAAGAATTT
GAAAGCGGTGAGCTGGGGTTGGAAAAGGGAAAAGAAACCATTGTCATGTG
TCATCACGGAGTTCGCTCTGCGAATTTCTGCTCTTTTCTCTCACAGCAAG
GCTTCACCAACGTTAGAAATTTGATCGGGGGAATAGATGCGTACTCGAGA
AAGATTAGCTCTTCAGTTCCTCAATACTAG
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protein sequence of Gchil3682.t1

>Gchil3682.t1 ID=Gchil3682.t1|Name=Gchil3682.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=210bp
MVRARHILVESEEMVDAIKQQIDDGKGNFAELAGLVSTCSSKARGGDLGW
FGRNTMVKQFEEAAFSNPPGSIVKVNSEFGWHLVKVEDHGVASRAITVDE
YERRFGESGSDDPSSVQLIDCREVGELELARLPNFLNLPMGEYGSWAEEF
ESGELGLEKGKETIVMCHHGVRSANFCSFLSQQGFTNVRNLIGGIDAYSR
KISSSVPQY*
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mRNA from alignment at tig00025222_pilon:587509..588138+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3682.t1 ID=Gchil3682.t1|Name=Gchil3682.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=630bp|location=Sequence derived from alignment at tig00025222_pilon:587509..588138+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTGCGAGCCAGACATATCCTGGTTGAAAGCGAAGAAATGGTTGACGC
AATTAAGCAGCAGATAGATGACGGAAAAGGAAATTTTGCGGAACTCGCAG
GGCTTGTTAGTACTTGTTCATCGAAAGCCCGTGGTGGAGATCTCGGCTGG
TTCGGGCGAAATACAATGGTCAAGCAATTCGAGGAAGCGGCGTTTTCGAA
TCCGCCGGGGTCAATTGTAAAGGTAAATAGTGAATTCGGATGGCACCTCG
TCAAAGTCGAGGATCATGGTGTGGCTTCAAGGGCCATCACTGTTGACGAA
TATGAGAGAAGATTTGGAGAGAGCGGCTCTGACGACCCGTCAAGCGTTCA
ACTTATTGACTGCAGAGAAGTGGGAGAACTTGAATTGGCCAGACTGCCCA
ACTTCCTGAACTTACCGATGGGAGAGTACGGGTCATGGGCTGAAGAATTT
GAAAGCGGTGAGCTGGGGTTGGAAAAGGGAAAAGAAACCATTGTCATGTG
TCATCACGGAGTTCGCTCTGCGAATTTCTGCTCTTTTCTCTCACAGCAAG
GCTTCACCAACGTTAGAAATTTGATCGGGGGAATAGATGCGTACTCGAGA
AAGATTAGCTCTTCAGTTCCTCAATACTAG
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Coding sequence (CDS) from alignment at tig00025222_pilon:587509..588138+

>Gchil3682.t1 ID=Gchil3682.t1|Name=Gchil3682.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=630bp|location=Sequence derived from alignment at tig00025222_pilon:587509..588138+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTGCGAGCCAGACATATCCTGGTTGAAAGCGAAGAAATGGTTGACGC
AATTAAGCAGCAGATAGATGACGGAAAAGGAAATTTTGCGGAACTCGCAG
GGCTTGTTAGTACTTGTTCATCGAAAGCCCGTGGTGGAGATCTCGGCTGG
TTCGGGCGAAATACAATGGTCAAGCAATTCGAGGAAGCGGCGTTTTCGAA
TCCGCCGGGGTCAATTGTAAAGGTAAATAGTGAATTCGGATGGCACCTCG
TCAAAGTCGAGGATCATGGTGTGGCTTCAAGGGCCATCACTGTTGACGAA
TATGAGAGAAGATTTGGAGAGAGCGGCTCTGACGACCCGTCAAGCGTTCA
ACTTATTGACTGCAGAGAAGTGGGAGAACTTGAATTGGCCAGACTGCCCA
ACTTCCTGAACTTACCGATGGGAGAGTACGGGTCATGGGCTGAAGAATTT
GAAAGCGGTGAGCTGGGGTTGGAAAAGGGAAAAGAAACCATTGTCATGTG
TCATCACGGAGTTCGCTCTGCGAATTTCTGCTCTTTTCTCTCACAGCAAG
GCTTCACCAACGTTAGAAATTTGATCGGGGGAATAGATGCGTACTCGAGA
AAGATTAGCTCTTCAGTTCCTCAATACTAG
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