Gchil3679.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3679.t1
Unique Name	Gchil3679.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	592

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00025222_pilon	contig	tig00025222_pilon:578722..580497 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	13333.ERN15392
PFAMs	B3_4,B5,tRNA-synt_2d
Max annot lvl	35493\|Streptophyta
KEGG rclass	RC00055,RC00523
KEGG ko	ko:K01890
KEGG Reaction	R03660
KEGG Pathway	ko00970,map00970
KEGG Module	M00359,M00360
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494
Evalue	1.61e-204
EggNOG OGs	COG0072@1\|root,KOG2472@2759\|Eukaryota,37QBY@33090\|Viridiplantae,3G9AC@35493\|Streptophyta
EC	6.1.1.20
Description	Phenylalanine--tRNA ligase beta subunit
COG category	J
BRITE	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3679	Gchil3679	Gracilaria chilensis NLEC103_M9 male	gene	tig00025222_pilon 578722..580497 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3679.t1.stop1	Gchil3679.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00025222_pilon 578722..578724 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3679.t1.CDS1	Gchil3679.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00025222_pilon 578722..580497 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3679.t1.exon1	Gchil3679.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00025222_pilon 578722..580497 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3679.t1.start1	Gchil3679.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00025222_pilon 580495..580497 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3679.t1	Gchil3679.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00025222_pilon 578722..580497 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00025222_pilon:578722..580497-
coding sequence from alignment at tig00025222_pilon:578722..580497-

mRNA sequence

>Gchil3679.t1 ID=Gchil3679.t1|Name=Gchil3679.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=592bp
MPTVSIARDRLFEDIGRSFTEKEFDELCFEFGLELDEVVSEKPQIGAKAL
SAGVEVKEEVRYKIEVPANRYDLLCSEGLSQALRVFMGYDSAVPDYKIVG
EAQCTFSVQKEVAEVRPYVFCAVLRNIRVDEVVYQNLIDLQDKLHQNICR
RRTLVAIGTHDLDTIEGPFSYEALPPKEIHFKPLAKTEEYDAAQLMKVYE
EDIGLKQYLSIIRDCPRYPVIFDSNRRVLSMPPIINGDHSKITLNTRNML
IECTATDKTKASIVLNTLVAMFSRYCEKPYTVEPVVVNYADGTTMVTPDL
STPKVTANVNYINRSVGVNLEPAEMVTMLARMQLPASVLDEKTIGVDVPI
IRSDVLHACDIMCDVAVGYGFNRVPERVPETSTVGKQLPINHLSDMVRRE
GLAQQGYTEVLTWVTVSNAENFSSLRRVDDGSLAVKIGNPKTLEFEECRT
SLLPGLLKTLRENRSAKVPVRLFEVGDVVLKDKNSEVLACNRRKVAAIYC
AQSAGFEVIQGLLENVLNTLGLKRGKGEEKGCWSLDAKSCSDGAFFEGRR
ANIVFAGKPIGALGWVHPEVLSNFSLSYPCSAMEFDLEAFL*

spliced messenger RNA

>Gchil3679.t1 ID=Gchil3679.t1|Name=Gchil3679.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1776bp|location=Sequence derived from alignment at tig00025222_pilon:578722..580497- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCACGGTGTCTATAGCACGTGATCGTCTTTTCGAAGATATTGGTCG
ATCATTCACCGAGAAGGAATTTGATGAACTTTGCTTTGAATTCGGCCTAG
AGCTGGACGAGGTGGTGAGTGAGAAACCTCAGATAGGAGCTAAGGCGCTT
TCAGCTGGCGTAGAAGTTAAGGAAGAAGTAAGGTATAAGATCGAAGTGCC
AGCGAATCGCTACGACTTACTGTGCTCAGAGGGATTGAGCCAGGCTCTTC
GCGTGTTTATGGGTTACGATTCAGCCGTTCCAGATTACAAAATAGTTGGC
GAAGCACAGTGTACCTTTAGTGTGCAAAAAGAGGTGGCGGAAGTTCGGCC
ATACGTATTCTGTGCCGTGCTCCGCAATATTCGCGTGGACGAAGTCGTCT
ATCAAAATCTGATTGACTTGCAAGACAAGCTTCATCAAAACATTTGCAGA
CGTCGTACATTGGTGGCCATCGGTACCCATGATTTGGACACAATTGAAGG
GCCTTTCTCATATGAAGCGCTTCCACCGAAAGAGATCCATTTCAAGCCGC
TGGCCAAGACAGAAGAATACGATGCTGCGCAATTAATGAAAGTGTATGAA
GAAGATATTGGTCTCAAGCAATATCTAAGTATTATACGAGATTGCCCTCG
ATACCCCGTAATTTTCGACTCTAACCGAAGAGTATTATCGATGCCACCGA
TCATAAATGGAGACCATTCGAAGATAACTTTGAACACAAGAAATATGCTG
ATCGAGTGTACCGCGACAGATAAAACGAAGGCGAGCATCGTTCTGAACAC
TCTCGTGGCTATGTTTTCTCGGTATTGTGAGAAGCCGTATACCGTTGAGC
CTGTTGTGGTTAATTATGCCGATGGCACTACAATGGTCACACCGGATTTA
TCTACGCCAAAAGTCACAGCGAATGTCAATTACATTAATCGTAGCGTCGG
GGTAAATCTTGAGCCAGCCGAAATGGTTACCATGCTGGCTCGTATGCAGC
TTCCAGCAAGCGTGTTGGACGAAAAGACTATTGGTGTGGACGTTCCAATC
ATTCGATCCGATGTGCTTCATGCGTGCGACATTATGTGCGATGTTGCCGT
AGGATATGGCTTTAATCGCGTTCCGGAGCGAGTCCCAGAAACAAGTACGG
TGGGAAAGCAGCTCCCCATCAATCACCTATCGGACATGGTTCGAAGAGAG
GGCTTAGCCCAACAAGGATACACCGAAGTATTGACATGGGTAACAGTTTC
TAATGCAGAGAATTTTAGTTCTTTGCGACGGGTTGATGATGGTTCTCTGG
CCGTGAAAATAGGCAATCCGAAAACGTTGGAATTCGAAGAATGCCGAACT
TCGTTACTGCCAGGCTTGCTGAAGACCCTGCGAGAAAACAGAAGTGCAAA
GGTTCCTGTTCGTTTGTTCGAAGTGGGAGATGTGGTTTTGAAGGACAAGA
ACTCAGAGGTTCTAGCATGCAATCGGAGGAAAGTAGCAGCGATATATTGT
GCACAATCTGCTGGGTTTGAAGTGATTCAGGGACTCTTGGAGAACGTGCT
GAACACACTTGGTTTGAAGCGTGGAAAAGGTGAAGAAAAGGGCTGTTGGA
GCTTAGATGCCAAAAGTTGCTCTGATGGTGCATTCTTTGAGGGAAGAAGA
GCAAATATCGTCTTCGCCGGCAAACCTATTGGTGCACTTGGATGGGTGCA
TCCTGAAGTGCTTAGTAACTTTTCGCTTAGTTATCCGTGTTCGGCGATGG
AATTTGATCTGGAAGCTTTTCTGTAG

protein sequence of Gchil3679.t1

>Gchil3679.t1 ID=Gchil3679.t1|Name=Gchil3679.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=592bp
MPTVSIARDRLFEDIGRSFTEKEFDELCFEFGLELDEVVSEKPQIGAKAL
SAGVEVKEEVRYKIEVPANRYDLLCSEGLSQALRVFMGYDSAVPDYKIVG
EAQCTFSVQKEVAEVRPYVFCAVLRNIRVDEVVYQNLIDLQDKLHQNICR
RRTLVAIGTHDLDTIEGPFSYEALPPKEIHFKPLAKTEEYDAAQLMKVYE
EDIGLKQYLSIIRDCPRYPVIFDSNRRVLSMPPIINGDHSKITLNTRNML
IECTATDKTKASIVLNTLVAMFSRYCEKPYTVEPVVVNYADGTTMVTPDL
STPKVTANVNYINRSVGVNLEPAEMVTMLARMQLPASVLDEKTIGVDVPI
IRSDVLHACDIMCDVAVGYGFNRVPERVPETSTVGKQLPINHLSDMVRRE
GLAQQGYTEVLTWVTVSNAENFSSLRRVDDGSLAVKIGNPKTLEFEECRT
SLLPGLLKTLRENRSAKVPVRLFEVGDVVLKDKNSEVLACNRRKVAAIYC
AQSAGFEVIQGLLENVLNTLGLKRGKGEEKGCWSLDAKSCSDGAFFEGRR
ANIVFAGKPIGALGWVHPEVLSNFSLSYPCSAMEFDLEAFL*

mRNA from alignment at tig00025222_pilon:578722..580497-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3679.t1 ID=Gchil3679.t1|Name=Gchil3679.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1776bp|location=Sequence derived from alignment at tig00025222_pilon:578722..580497- (Gracilaria chilensis NLEC103_M9 male)
ATGCCCACGGTGTCTATAGCACGTGATCGTCTTTTCGAAGATATTGGTCG
ATCATTCACCGAGAAGGAATTTGATGAACTTTGCTTTGAATTCGGCCTAG
AGCTGGACGAGGTGGTGAGTGAGAAACCTCAGATAGGAGCTAAGGCGCTT
TCAGCTGGCGTAGAAGTTAAGGAAGAAGTAAGGTATAAGATCGAAGTGCC
AGCGAATCGCTACGACTTACTGTGCTCAGAGGGATTGAGCCAGGCTCTTC
GCGTGTTTATGGGTTACGATTCAGCCGTTCCAGATTACAAAATAGTTGGC
GAAGCACAGTGTACCTTTAGTGTGCAAAAAGAGGTGGCGGAAGTTCGGCC
ATACGTATTCTGTGCCGTGCTCCGCAATATTCGCGTGGACGAAGTCGTCT
ATCAAAATCTGATTGACTTGCAAGACAAGCTTCATCAAAACATTTGCAGA
CGTCGTACATTGGTGGCCATCGGTACCCATGATTTGGACACAATTGAAGG
GCCTTTCTCATATGAAGCGCTTCCACCGAAAGAGATCCATTTCAAGCCGC
TGGCCAAGACAGAAGAATACGATGCTGCGCAATTAATGAAAGTGTATGAA
GAAGATATTGGTCTCAAGCAATATCTAAGTATTATACGAGATTGCCCTCG
ATACCCCGTAATTTTCGACTCTAACCGAAGAGTATTATCGATGCCACCGA
TCATAAATGGAGACCATTCGAAGATAACTTTGAACACAAGAAATATGCTG
ATCGAGTGTACCGCGACAGATAAAACGAAGGCGAGCATCGTTCTGAACAC
TCTCGTGGCTATGTTTTCTCGGTATTGTGAGAAGCCGTATACCGTTGAGC
CTGTTGTGGTTAATTATGCCGATGGCACTACAATGGTCACACCGGATTTA
TCTACGCCAAAAGTCACAGCGAATGTCAATTACATTAATCGTAGCGTCGG
GGTAAATCTTGAGCCAGCCGAAATGGTTACCATGCTGGCTCGTATGCAGC
TTCCAGCAAGCGTGTTGGACGAAAAGACTATTGGTGTGGACGTTCCAATC
ATTCGATCCGATGTGCTTCATGCGTGCGACATTATGTGCGATGTTGCCGT
AGGATATGGCTTTAATCGCGTTCCGGAGCGAGTCCCAGAAACAAGTACGG
TGGGAAAGCAGCTCCCCATCAATCACCTATCGGACATGGTTCGAAGAGAG
GGCTTAGCCCAACAAGGATACACCGAAGTATTGACATGGGTAACAGTTTC
TAATGCAGAGAATTTTAGTTCTTTGCGACGGGTTGATGATGGTTCTCTGG
CCGTGAAAATAGGCAATCCGAAAACGTTGGAATTCGAAGAATGCCGAACT
TCGTTACTGCCAGGCTTGCTGAAGACCCTGCGAGAAAACAGAAGTGCAAA
GGTTCCTGTTCGTTTGTTCGAAGTGGGAGATGTGGTTTTGAAGGACAAGA
ACTCAGAGGTTCTAGCATGCAATCGGAGGAAAGTAGCAGCGATATATTGT
GCACAATCTGCTGGGTTTGAAGTGATTCAGGGACTCTTGGAGAACGTGCT
GAACACACTTGGTTTGAAGCGTGGAAAAGGTGAAGAAAAGGGCTGTTGGA
GCTTAGATGCCAAAAGTTGCTCTGATGGTGCATTCTTTGAGGGAAGAAGA
GCAAATATCGTCTTCGCCGGCAAACCTATTGGTGCACTTGGATGGGTGCA
TCCTGAAGTGCTTAGTAACTTTTCGCTTAGTTATCCGTGTTCGGCGATGG
AATTTGATCTGGAAGCTTTTCTGTAG

Coding sequence (CDS) from alignment at tig00025222_pilon:578722..580497-

>Gchil3679.t1 ID=Gchil3679.t1|Name=Gchil3679.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1776bp|location=Sequence derived from alignment at tig00025222_pilon:578722..580497- (Gracilaria chilensis NLEC103_M9 male)
ATGCCCACGGTGTCTATAGCACGTGATCGTCTTTTCGAAGATATTGGTCG
ATCATTCACCGAGAAGGAATTTGATGAACTTTGCTTTGAATTCGGCCTAG
AGCTGGACGAGGTGGTGAGTGAGAAACCTCAGATAGGAGCTAAGGCGCTT
TCAGCTGGCGTAGAAGTTAAGGAAGAAGTAAGGTATAAGATCGAAGTGCC
AGCGAATCGCTACGACTTACTGTGCTCAGAGGGATTGAGCCAGGCTCTTC
GCGTGTTTATGGGTTACGATTCAGCCGTTCCAGATTACAAAATAGTTGGC
GAAGCACAGTGTACCTTTAGTGTGCAAAAAGAGGTGGCGGAAGTTCGGCC
ATACGTATTCTGTGCCGTGCTCCGCAATATTCGCGTGGACGAAGTCGTCT
ATCAAAATCTGATTGACTTGCAAGACAAGCTTCATCAAAACATTTGCAGA
CGTCGTACATTGGTGGCCATCGGTACCCATGATTTGGACACAATTGAAGG
GCCTTTCTCATATGAAGCGCTTCCACCGAAAGAGATCCATTTCAAGCCGC
TGGCCAAGACAGAAGAATACGATGCTGCGCAATTAATGAAAGTGTATGAA
GAAGATATTGGTCTCAAGCAATATCTAAGTATTATACGAGATTGCCCTCG
ATACCCCGTAATTTTCGACTCTAACCGAAGAGTATTATCGATGCCACCGA
TCATAAATGGAGACCATTCGAAGATAACTTTGAACACAAGAAATATGCTG
ATCGAGTGTACCGCGACAGATAAAACGAAGGCGAGCATCGTTCTGAACAC
TCTCGTGGCTATGTTTTCTCGGTATTGTGAGAAGCCGTATACCGTTGAGC
CTGTTGTGGTTAATTATGCCGATGGCACTACAATGGTCACACCGGATTTA
TCTACGCCAAAAGTCACAGCGAATGTCAATTACATTAATCGTAGCGTCGG
GGTAAATCTTGAGCCAGCCGAAATGGTTACCATGCTGGCTCGTATGCAGC
TTCCAGCAAGCGTGTTGGACGAAAAGACTATTGGTGTGGACGTTCCAATC
ATTCGATCCGATGTGCTTCATGCGTGCGACATTATGTGCGATGTTGCCGT
AGGATATGGCTTTAATCGCGTTCCGGAGCGAGTCCCAGAAACAAGTACGG
TGGGAAAGCAGCTCCCCATCAATCACCTATCGGACATGGTTCGAAGAGAG
GGCTTAGCCCAACAAGGATACACCGAAGTATTGACATGGGTAACAGTTTC
TAATGCAGAGAATTTTAGTTCTTTGCGACGGGTTGATGATGGTTCTCTGG
CCGTGAAAATAGGCAATCCGAAAACGTTGGAATTCGAAGAATGCCGAACT
TCGTTACTGCCAGGCTTGCTGAAGACCCTGCGAGAAAACAGAAGTGCAAA
GGTTCCTGTTCGTTTGTTCGAAGTGGGAGATGTGGTTTTGAAGGACAAGA
ACTCAGAGGTTCTAGCATGCAATCGGAGGAAAGTAGCAGCGATATATTGT
GCACAATCTGCTGGGTTTGAAGTGATTCAGGGACTCTTGGAGAACGTGCT
GAACACACTTGGTTTGAAGCGTGGAAAAGGTGAAGAAAAGGGCTGTTGGA
GCTTAGATGCCAAAAGTTGCTCTGATGGTGCATTCTTTGAGGGAAGAAGA
GCAAATATCGTCTTCGCCGGCAAACCTATTGGTGCACTTGGATGGGTGCA
TCCTGAAGTGCTTAGTAACTTTTCGCTTAGTTATCCGTGTTCGGCGATGG
AATTTGATCTGGAAGCTTTTCTGTAG