Gchil3676.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3676.t1
Unique NameGchil3676.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length355
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025222_piloncontigtig00025222_pilon:569290..570425 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog71139.XP_010036171.1
PFAMsGST_C_2,GST_N_2
Max annot lvl35493|Streptophyta
KEGG koko:K07393
Evalue1.22e-69
EggNOG OGsCOG0435@1|root,KOG2903@2759|Eukaryota,37JC9@33090|Viridiplantae,3GCY4@35493|Streptophyta
EC1.8.5.7
Descriptionglutathione s-transferase
COG categoryO
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3676Gchil3676Gracilaria chilensis NLEC103_M9 malegenetig00025222_pilon 569290..570425 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3676.t1Gchil3676.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025222_pilon 569290..570425 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3676.t1.start1Gchil3676.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025222_pilon 569290..569292 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3676.t1.CDS1Gchil3676.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 569290..570169 +
Gchil3676.t1.CDS2Gchil3676.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 570241..570425 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3676.t1.exon1Gchil3676.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 569290..570169 +
Gchil3676.t1.exon2Gchil3676.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 570241..570425 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3676.t1.intron1Gchil3676.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00025222_pilon 570170..570240 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3676.t1.stop1Gchil3676.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025222_pilon 570423..570425 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3676.t1 ID=Gchil3676.t1|Name=Gchil3676.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=355bp
MLPLLVRTARASFVSFWRVLMAQLAPSDAQGRYVRPSSRVSLSYDGSPFG
QTVAAVSRSFAARHHQPPYAVYVGLACQWCHRVLLARALLNLHQSIELRL
LNPGEEGLWRLADPQRYDSTVSTLKAVYYQMDRKYSGRFTAPLFVQVDQD
RIVSNESADILRLLAESGPVSIDEHTVVCLRPTKQHGLDVDPHALEQLCQ
TVYTCVNDGVYRCGFATSQLAYEEAESNLFSTLDHIEALLTHTRFLCSPS
VITEADVRLFPTIFRFDSVYAVLFKACRKSIRADYPAISAWMRDIYNLPR
VAETCDLEATRNNYYTSLFPLNPSAIVPVPPPQDLSPAPERRTKGSSNEL
VSPT*
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spliced messenger RNA

>Gchil3676.t1 ID=Gchil3676.t1|Name=Gchil3676.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1065bp|location=Sequence derived from alignment at tig00025222_pilon:569290..570425+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCCGCTGCTCGTCCGCACCGCGCGCGCCTCGTTCGTCTCCTTCTG
GCGCGTGCTCATGGCACAACTGGCGCCCTCCGACGCACAGGGTCGCTACG
TGCGCCCTTCATCGCGCGTTTCGCTCAGTTACGATGGCAGTCCCTTTGGC
CAGACCGTGGCCGCCGTGAGCCGCTCGTTTGCGGCGCGCCATCACCAGCC
ACCCTATGCCGTGTACGTGGGGCTGGCGTGCCAGTGGTGCCATCGCGTAT
TGCTTGCGCGCGCCCTTCTCAATCTGCACCAGAGCATCGAGCTGCGATTG
CTCAACCCCGGCGAGGAGGGGTTGTGGCGCCTTGCTGACCCGCAACGCTA
TGACTCTACTGTCTCCACTTTGAAGGCTGTCTATTATCAGATGGACCGCA
AGTATTCTGGTCGCTTTACAGCTCCGCTCTTCGTTCAAGTCGACCAGGAC
CGAATCGTTTCTAATGAGTCCGCTGATATCCTACGCCTCTTGGCAGAGTC
CGGCCCCGTCTCCATAGATGAGCACACTGTAGTTTGCTTGCGTCCCACAA
AACAGCACGGCCTCGATGTTGATCCCCACGCGCTAGAACAGCTTTGCCAA
ACAGTGTACACCTGTGTCAACGATGGCGTTTATCGCTGTGGCTTTGCCAC
CTCCCAGTTGGCGTACGAGGAAGCGGAGTCCAATCTGTTTTCCACTCTTG
ACCACATTGAAGCTCTCCTCACCCACACAAGATTCCTCTGCAGTCCCTCA
GTCATCACTGAAGCTGATGTGCGCCTGTTTCCGACCATCTTCCGCTTTGA
TTCCGTTTATGCAGTGCTTTTCAAGGCATGTCGCAAATCCATTCGCGCAG
ATTATCCCGCAATATCCGCATGGATGCGAGACATATACAATTTGCCGCGA
GTGGCCGAGACCTGCGACCTTGAAGCCACCCGCAACAACTACTACACCAG
TCTTTTCCCTTTGAACCCAAGCGCTATCGTTCCTGTCCCCCCGCCACAAG
ACTTGTCTCCCGCCCCCGAACGACGCACAAAAGGGTCGTCAAATGAGCTA
GTTTCACCTACTTGA
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protein sequence of Gchil3676.t1

>Gchil3676.t1 ID=Gchil3676.t1|Name=Gchil3676.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=355bp
MLPLLVRTARASFVSFWRVLMAQLAPSDAQGRYVRPSSRVSLSYDGSPFG
QTVAAVSRSFAARHHQPPYAVYVGLACQWCHRVLLARALLNLHQSIELRL
LNPGEEGLWRLADPQRYDSTVSTLKAVYYQMDRKYSGRFTAPLFVQVDQD
RIVSNESADILRLLAESGPVSIDEHTVVCLRPTKQHGLDVDPHALEQLCQ
TVYTCVNDGVYRCGFATSQLAYEEAESNLFSTLDHIEALLTHTRFLCSPS
VITEADVRLFPTIFRFDSVYAVLFKACRKSIRADYPAISAWMRDIYNLPR
VAETCDLEATRNNYYTSLFPLNPSAIVPVPPPQDLSPAPERRTKGSSNEL
VSPT*
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mRNA from alignment at tig00025222_pilon:569290..570425+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3676.t1 ID=Gchil3676.t1|Name=Gchil3676.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1136bp|location=Sequence derived from alignment at tig00025222_pilon:569290..570425+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTGCCGCTGCTCGTCCGCACCGCGCGCGCCTCGTTCGTCTCCTTCTG
GCGCGTGCTCATGGCACAACTGGCGCCCTCCGACGCACAGGGTCGCTACG
TGCGCCCTTCATCGCGCGTTTCGCTCAGTTACGATGGCAGTCCCTTTGGC
CAGACCGTGGCCGCCGTGAGCCGCTCGTTTGCGGCGCGCCATCACCAGCC
ACCCTATGCCGTGTACGTGGGGCTGGCGTGCCAGTGGTGCCATCGCGTAT
TGCTTGCGCGCGCCCTTCTCAATCTGCACCAGAGCATCGAGCTGCGATTG
CTCAACCCCGGCGAGGAGGGGTTGTGGCGCCTTGCTGACCCGCAACGCTA
TGACTCTACTGTCTCCACTTTGAAGGCTGTCTATTATCAGATGGACCGCA
AGTATTCTGGTCGCTTTACAGCTCCGCTCTTCGTTCAAGTCGACCAGGAC
CGAATCGTTTCTAATGAGTCCGCTGATATCCTACGCCTCTTGGCAGAGTC
CGGCCCCGTCTCCATAGATGAGCACACTGTAGTTTGCTTGCGTCCCACAA
AACAGCACGGCCTCGATGTTGATCCCCACGCGCTAGAACAGCTTTGCCAA
ACAGTGTACACCTGTGTCAACGATGGCGTTTATCGCTGTGGCTTTGCCAC
CTCCCAGTTGGCGTACGAGGAAGCGGAGTCCAATCTGTTTTCCACTCTTG
ACCACATTGAAGCTCTCCTCACCCACACAAGATTCCTCTGCAGTCCCTCA
GTCATCACTGAAGCTGATGTGCGCCTGTTTCCGACCATCTTCCGCTTTGA
TTCCGTTTATGCAGTGCTTTTCAAGGCATGTCGCAAATCCATTCGCGCAG
ATTATCCCGCAATATCCGCATGGATGCGAGGTAAGTCAAAACTCACTTCC
TTCGCTTTTATTCCTGTTACAATGATTAACATGCCGCTCATTCTGCACTA
GACATATACAATTTGCCGCGAGTGGCCGAGACCTGCGACCTTGAAGCCAC
CCGCAACAACTACTACACCAGTCTTTTCCCTTTGAACCCAAGCGCTATCG
TTCCTGTCCCCCCGCCACAAGACTTGTCTCCCGCCCCCGAACGACGCACA
AAAGGGTCGTCAAATGAGCTAGTTTCACCTACTTGA
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Coding sequence (CDS) from alignment at tig00025222_pilon:569290..570425+

>Gchil3676.t1 ID=Gchil3676.t1|Name=Gchil3676.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1065bp|location=Sequence derived from alignment at tig00025222_pilon:569290..570425+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTGCCGCTGCTCGTCCGCACCGCGCGCGCCTCGTTCGTCTCCTTCTG
GCGCGTGCTCATGGCACAACTGGCGCCCTCCGACGCACAGGGTCGCTACG
TGCGCCCTTCATCGCGCGTTTCGCTCAGTTACGATGGCAGTCCCTTTGGC
CAGACCGTGGCCGCCGTGAGCCGCTCGTTTGCGGCGCGCCATCACCAGCC
ACCCTATGCCGTGTACGTGGGGCTGGCGTGCCAGTGGTGCCATCGCGTAT
TGCTTGCGCGCGCCCTTCTCAATCTGCACCAGAGCATCGAGCTGCGATTG
CTCAACCCCGGCGAGGAGGGGTTGTGGCGCCTTGCTGACCCGCAACGCTA
TGACTCTACTGTCTCCACTTTGAAGGCTGTCTATTATCAGATGGACCGCA
AGTATTCTGGTCGCTTTACAGCTCCGCTCTTCGTTCAAGTCGACCAGGAC
CGAATCGTTTCTAATGAGTCCGCTGATATCCTACGCCTCTTGGCAGAGTC
CGGCCCCGTCTCCATAGATGAGCACACTGTAGTTTGCTTGCGTCCCACAA
AACAGCACGGCCTCGATGTTGATCCCCACGCGCTAGAACAGCTTTGCCAA
ACAGTGTACACCTGTGTCAACGATGGCGTTTATCGCTGTGGCTTTGCCAC
CTCCCAGTTGGCGTACGAGGAAGCGGAGTCCAATCTGTTTTCCACTCTTG
ACCACATTGAAGCTCTCCTCACCCACACAAGATTCCTCTGCAGTCCCTCA
GTCATCACTGAAGCTGATGTGCGCCTGTTTCCGACCATCTTCCGCTTTGA
TTCCGTTTATGCAGTGCTTTTCAAGGCATGTCGCAAATCCATTCGCGCAG
ATTATCCCGCAATATCCGCATGGATGCGAGACATATACAATTTGCCGCGA
GTGGCCGAGACCTGCGACCTTGAAGCCACCCGCAACAACTACTACACCAG
TCTTTTCCCTTTGAACCCAAGCGCTATCGTTCCTGTCCCCCCGCCACAAG
ACTTGTCTCCCGCCCCCGAACGACGCACAAAAGGGTCGTCAAATGAGCTA
GTTTCACCTACTTGA
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