Gchil3673.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3673.t1
Unique Name	Gchil3673.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	495

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00025222_pilon	contig	tig00025222_pilon:564411..565895 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3673	Gchil3673	Gracilaria chilensis NLEC103_M9 male	gene	tig00025222_pilon 564411..565895 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3673.t1.start1	Gchil3673.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00025222_pilon 564411..564413 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3673.t1.CDS1	Gchil3673.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00025222_pilon 564411..565895 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3673.t1.exon1	Gchil3673.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00025222_pilon 564411..565895 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3673.t1.stop1	Gchil3673.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00025222_pilon 565893..565895 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3673.t1	Gchil3673.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00025222_pilon 564411..565895 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00025222_pilon:564411..565895+
coding sequence from alignment at tig00025222_pilon:564411..565895+

mRNA sequence

>Gchil3673.t1 ID=Gchil3673.t1|Name=Gchil3673.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=495bp
MAILSPALVVAMCVMFILTRLHSHFYIFERPLLFGLKYCVEPENAHLEAI
AQAGAKSSQPGKKKSRQSSAASKTKLTASALPVRRGKISETFFPTESEFP
HHRELAHITGIVCGYLAAFLFEDVVGCFFPALLANKRSVYVAVFAVCFAL
YELLLISTSLTSRKAMIALTAASWIVSIFLVSGGDYRNFVKFDKAFQALQ
SEAHSVLTGRFGVDVNKAQTYARNIAICARVLISTIAALIAASSAVPARR
FSRIDYDLNLQYRMDISEHQTDPYSLGPVTSLTMVRIALDYTLPLLFAFL
WTVVPRDEDMYSSWRILSLLVCVIAKGTMARIRIQGYLDGAIDAYRRFWT
EKPVNGVAEAGRSCSFQVIGTSFYLILITVAYIGPPVITLLLTLVAKHDG
GFRMPFCRPRGVDQGLQLETFFREIAGFLAWWSVASYALFGSMSILSEFI
IDVIDPSGRDRRKKLPSASSASERRREKRLVQERMMKGRLQPAR*

spliced messenger RNA

>Gchil3673.t1 ID=Gchil3673.t1|Name=Gchil3673.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1485bp|location=Sequence derived from alignment at tig00025222_pilon:564411..565895+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCATCTTATCCCCCGCCTTGGTGGTTGCCATGTGCGTCATGTTCAT
TCTCACCCGCCTGCACTCCCATTTCTATATATTCGAGCGTCCACTGCTCT
TCGGTCTCAAGTACTGCGTCGAGCCAGAGAACGCACATCTGGAAGCCATA
GCGCAAGCTGGCGCTAAGAGCTCGCAACCGGGAAAGAAGAAGAGCAGGCA
ATCGTCGGCTGCTTCCAAAACTAAACTTACCGCCAGTGCTCTTCCTGTGC
GTCGAGGAAAGATTTCTGAAACCTTCTTTCCCACAGAGTCCGAGTTTCCC
CATCACCGCGAACTGGCTCATATCACAGGTATTGTTTGCGGCTATCTTGC
AGCTTTTCTCTTTGAGGATGTAGTTGGTTGTTTCTTTCCCGCTTTGTTGG
CGAATAAGCGTTCGGTCTATGTAGCTGTGTTTGCTGTCTGTTTTGCATTG
TATGAGTTGCTGCTCATTTCAACCAGTCTCACTTCTCGAAAAGCGATGAT
TGCGCTCACTGCTGCTTCGTGGATAGTCTCTATCTTTCTTGTATCTGGCG
GCGATTACCGAAACTTTGTCAAGTTTGACAAGGCTTTTCAAGCTCTGCAA
AGCGAGGCACACAGTGTGCTTACGGGTCGGTTTGGTGTAGACGTCAACAA
GGCACAAACGTATGCACGCAATATCGCTATTTGCGCTCGTGTGCTTATTT
CCACAATCGCTGCATTGATAGCTGCGTCCAGTGCCGTTCCTGCACGCCGC
TTCTCGCGCATCGATTATGATCTTAATCTGCAGTATAGAATGGACATCAG
CGAACACCAAACTGACCCCTATTCTCTGGGACCGGTTACATCATTAACAA
TGGTTCGCATTGCGCTTGACTACACCCTTCCGTTGTTATTCGCCTTTCTG
TGGACTGTTGTTCCAAGAGATGAAGACATGTACAGTTCATGGCGTATCCT
TTCCCTCTTGGTATGTGTTATCGCCAAGGGGACCATGGCTCGAATAAGGA
TTCAGGGTTATCTTGATGGTGCAATAGACGCGTACAGACGATTCTGGACG
GAAAAACCCGTGAATGGTGTGGCTGAAGCTGGTCGCAGTTGTTCATTTCA
GGTCATCGGGACTTCTTTCTATTTGATTCTAATCACCGTTGCATACATTG
GTCCTCCGGTCATCACTCTTTTGCTGACTCTGGTTGCAAAGCATGATGGC
GGCTTTCGGATGCCGTTTTGCCGTCCTAGGGGGGTTGACCAAGGTTTACA
GCTCGAAACTTTCTTCCGCGAAATAGCGGGCTTTCTTGCCTGGTGGAGCG
TTGCTTCTTATGCTCTATTTGGCAGCATGTCGATTTTAAGCGAGTTCATA
ATAGACGTTATTGATCCAAGTGGTCGTGACCGTCGAAAAAAGCTTCCATC
CGCCTCCAGCGCTTCAGAGCGGCGAAGGGAGAAACGCCTGGTACAAGAAC
GAATGATGAAAGGCCGTCTTCAGCCGGCAAGATGA

protein sequence of Gchil3673.t1

>Gchil3673.t1 ID=Gchil3673.t1|Name=Gchil3673.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=495bp
MAILSPALVVAMCVMFILTRLHSHFYIFERPLLFGLKYCVEPENAHLEAI
AQAGAKSSQPGKKKSRQSSAASKTKLTASALPVRRGKISETFFPTESEFP
HHRELAHITGIVCGYLAAFLFEDVVGCFFPALLANKRSVYVAVFAVCFAL
YELLLISTSLTSRKAMIALTAASWIVSIFLVSGGDYRNFVKFDKAFQALQ
SEAHSVLTGRFGVDVNKAQTYARNIAICARVLISTIAALIAASSAVPARR
FSRIDYDLNLQYRMDISEHQTDPYSLGPVTSLTMVRIALDYTLPLLFAFL
WTVVPRDEDMYSSWRILSLLVCVIAKGTMARIRIQGYLDGAIDAYRRFWT
EKPVNGVAEAGRSCSFQVIGTSFYLILITVAYIGPPVITLLLTLVAKHDG
GFRMPFCRPRGVDQGLQLETFFREIAGFLAWWSVASYALFGSMSILSEFI
IDVIDPSGRDRRKKLPSASSASERRREKRLVQERMMKGRLQPAR*

mRNA from alignment at tig00025222_pilon:564411..565895+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3673.t1 ID=Gchil3673.t1|Name=Gchil3673.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1485bp|location=Sequence derived from alignment at tig00025222_pilon:564411..565895+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCATCTTATCCCCCGCCTTGGTGGTTGCCATGTGCGTCATGTTCAT
TCTCACCCGCCTGCACTCCCATTTCTATATATTCGAGCGTCCACTGCTCT
TCGGTCTCAAGTACTGCGTCGAGCCAGAGAACGCACATCTGGAAGCCATA
GCGCAAGCTGGCGCTAAGAGCTCGCAACCGGGAAAGAAGAAGAGCAGGCA
ATCGTCGGCTGCTTCCAAAACTAAACTTACCGCCAGTGCTCTTCCTGTGC
GTCGAGGAAAGATTTCTGAAACCTTCTTTCCCACAGAGTCCGAGTTTCCC
CATCACCGCGAACTGGCTCATATCACAGGTATTGTTTGCGGCTATCTTGC
AGCTTTTCTCTTTGAGGATGTAGTTGGTTGTTTCTTTCCCGCTTTGTTGG
CGAATAAGCGTTCGGTCTATGTAGCTGTGTTTGCTGTCTGTTTTGCATTG
TATGAGTTGCTGCTCATTTCAACCAGTCTCACTTCTCGAAAAGCGATGAT
TGCGCTCACTGCTGCTTCGTGGATAGTCTCTATCTTTCTTGTATCTGGCG
GCGATTACCGAAACTTTGTCAAGTTTGACAAGGCTTTTCAAGCTCTGCAA
AGCGAGGCACACAGTGTGCTTACGGGTCGGTTTGGTGTAGACGTCAACAA
GGCACAAACGTATGCACGCAATATCGCTATTTGCGCTCGTGTGCTTATTT
CCACAATCGCTGCATTGATAGCTGCGTCCAGTGCCGTTCCTGCACGCCGC
TTCTCGCGCATCGATTATGATCTTAATCTGCAGTATAGAATGGACATCAG
CGAACACCAAACTGACCCCTATTCTCTGGGACCGGTTACATCATTAACAA
TGGTTCGCATTGCGCTTGACTACACCCTTCCGTTGTTATTCGCCTTTCTG
TGGACTGTTGTTCCAAGAGATGAAGACATGTACAGTTCATGGCGTATCCT
TTCCCTCTTGGTATGTGTTATCGCCAAGGGGACCATGGCTCGAATAAGGA
TTCAGGGTTATCTTGATGGTGCAATAGACGCGTACAGACGATTCTGGACG
GAAAAACCCGTGAATGGTGTGGCTGAAGCTGGTCGCAGTTGTTCATTTCA
GGTCATCGGGACTTCTTTCTATTTGATTCTAATCACCGTTGCATACATTG
GTCCTCCGGTCATCACTCTTTTGCTGACTCTGGTTGCAAAGCATGATGGC
GGCTTTCGGATGCCGTTTTGCCGTCCTAGGGGGGTTGACCAAGGTTTACA
GCTCGAAACTTTCTTCCGCGAAATAGCGGGCTTTCTTGCCTGGTGGAGCG
TTGCTTCTTATGCTCTATTTGGCAGCATGTCGATTTTAAGCGAGTTCATA
ATAGACGTTATTGATCCAAGTGGTCGTGACCGTCGAAAAAAGCTTCCATC
CGCCTCCAGCGCTTCAGAGCGGCGAAGGGAGAAACGCCTGGTACAAGAAC
GAATGATGAAAGGCCGTCTTCAGCCGGCAAGATGA

Coding sequence (CDS) from alignment at tig00025222_pilon:564411..565895+

>Gchil3673.t1 ID=Gchil3673.t1|Name=Gchil3673.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1485bp|location=Sequence derived from alignment at tig00025222_pilon:564411..565895+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCATCTTATCCCCCGCCTTGGTGGTTGCCATGTGCGTCATGTTCAT
TCTCACCCGCCTGCACTCCCATTTCTATATATTCGAGCGTCCACTGCTCT
TCGGTCTCAAGTACTGCGTCGAGCCAGAGAACGCACATCTGGAAGCCATA
GCGCAAGCTGGCGCTAAGAGCTCGCAACCGGGAAAGAAGAAGAGCAGGCA
ATCGTCGGCTGCTTCCAAAACTAAACTTACCGCCAGTGCTCTTCCTGTGC
GTCGAGGAAAGATTTCTGAAACCTTCTTTCCCACAGAGTCCGAGTTTCCC
CATCACCGCGAACTGGCTCATATCACAGGTATTGTTTGCGGCTATCTTGC
AGCTTTTCTCTTTGAGGATGTAGTTGGTTGTTTCTTTCCCGCTTTGTTGG
CGAATAAGCGTTCGGTCTATGTAGCTGTGTTTGCTGTCTGTTTTGCATTG
TATGAGTTGCTGCTCATTTCAACCAGTCTCACTTCTCGAAAAGCGATGAT
TGCGCTCACTGCTGCTTCGTGGATAGTCTCTATCTTTCTTGTATCTGGCG
GCGATTACCGAAACTTTGTCAAGTTTGACAAGGCTTTTCAAGCTCTGCAA
AGCGAGGCACACAGTGTGCTTACGGGTCGGTTTGGTGTAGACGTCAACAA
GGCACAAACGTATGCACGCAATATCGCTATTTGCGCTCGTGTGCTTATTT
CCACAATCGCTGCATTGATAGCTGCGTCCAGTGCCGTTCCTGCACGCCGC
TTCTCGCGCATCGATTATGATCTTAATCTGCAGTATAGAATGGACATCAG
CGAACACCAAACTGACCCCTATTCTCTGGGACCGGTTACATCATTAACAA
TGGTTCGCATTGCGCTTGACTACACCCTTCCGTTGTTATTCGCCTTTCTG
TGGACTGTTGTTCCAAGAGATGAAGACATGTACAGTTCATGGCGTATCCT
TTCCCTCTTGGTATGTGTTATCGCCAAGGGGACCATGGCTCGAATAAGGA
TTCAGGGTTATCTTGATGGTGCAATAGACGCGTACAGACGATTCTGGACG
GAAAAACCCGTGAATGGTGTGGCTGAAGCTGGTCGCAGTTGTTCATTTCA
GGTCATCGGGACTTCTTTCTATTTGATTCTAATCACCGTTGCATACATTG
GTCCTCCGGTCATCACTCTTTTGCTGACTCTGGTTGCAAAGCATGATGGC
GGCTTTCGGATGCCGTTTTGCCGTCCTAGGGGGGTTGACCAAGGTTTACA
GCTCGAAACTTTCTTCCGCGAAATAGCGGGCTTTCTTGCCTGGTGGAGCG
TTGCTTCTTATGCTCTATTTGGCAGCATGTCGATTTTAAGCGAGTTCATA
ATAGACGTTATTGATCCAAGTGGTCGTGACCGTCGAAAAAAGCTTCCATC
CGCCTCCAGCGCTTCAGAGCGGCGAAGGGAGAAACGCCTGGTACAAGAAC
GAATGATGAAAGGCCGTCTTCAGCCGGCAAGATGA