Gchil3670.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3670.t1
Unique NameGchil3670.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length163
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025222_piloncontigtig00025222_pilon:558258..558746 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMI167CT
PFAMsDUF1499
Max annot lvl2759|Eukaryota
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0009579,GO:0031977,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044436,GO:0044444,GO:0044464
Evalue1.63e-25
EggNOG OGs28JPF@1|root,2QS2R@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3670Gchil3670Gracilaria chilensis NLEC103_M9 malegenetig00025222_pilon 558258..558746 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3670.t1.start1Gchil3670.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025222_pilon 558258..558260 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3670.t1.CDS1Gchil3670.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 558258..558746 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3670.t1.exon1Gchil3670.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 558258..558746 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3670.t1.stop1Gchil3670.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025222_pilon 558744..558746 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3670.t1Gchil3670.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025222_pilon 558258..558746 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3670.t1 ID=Gchil3670.t1|Name=Gchil3670.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=163bp
MCGAPDHSLAYGLVQGRLDKCRGDMPCVSTASVANPSKFGAPWTYRPQTD
DADAAWHALKAALEASRDRGRIVESVDGPQLYYLRAEFPSSFRGVDDVEF
RLIPEEALVTYRSASREAIFLYPLQTPINTDKNKTRLLDVRQALGWDEFA
GFNVFGVDTPLS*
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spliced messenger RNA

>Gchil3670.t1 ID=Gchil3670.t1|Name=Gchil3670.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=489bp|location=Sequence derived from alignment at tig00025222_pilon:558258..558746+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTGGCGCGCCCGATCATTCGCTCGCCTACGGACTGGTGCAGGGCCG
TTTGGACAAGTGTCGCGGCGATATGCCGTGCGTGAGCACGGCGTCCGTGG
CAAATCCCAGCAAGTTCGGCGCGCCCTGGACGTATCGCCCGCAGACGGAC
GACGCCGACGCCGCGTGGCACGCGCTCAAGGCCGCTTTAGAGGCCAGTCG
CGACCGCGGACGCATCGTCGAGAGCGTGGACGGTCCACAGTTGTATTACC
TTCGCGCCGAGTTTCCGTCATCGTTTCGCGGCGTGGACGACGTGGAGTTT
CGTCTCATTCCGGAAGAGGCGTTGGTGACGTACCGCAGCGCATCCAGAGA
GGCCATTTTCTTGTATCCTTTGCAGACGCCAATTAACACGGACAAGAACA
AGACGCGACTGCTGGACGTTCGTCAGGCGCTTGGGTGGGACGAATTTGCA
GGCTTCAATGTGTTTGGTGTTGACACACCGTTGTCGTGA
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protein sequence of Gchil3670.t1

>Gchil3670.t1 ID=Gchil3670.t1|Name=Gchil3670.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=163bp
MCGAPDHSLAYGLVQGRLDKCRGDMPCVSTASVANPSKFGAPWTYRPQTD
DADAAWHALKAALEASRDRGRIVESVDGPQLYYLRAEFPSSFRGVDDVEF
RLIPEEALVTYRSASREAIFLYPLQTPINTDKNKTRLLDVRQALGWDEFA
GFNVFGVDTPLS*
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mRNA from alignment at tig00025222_pilon:558258..558746+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3670.t1 ID=Gchil3670.t1|Name=Gchil3670.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=489bp|location=Sequence derived from alignment at tig00025222_pilon:558258..558746+ (Gracilaria chilensis NLEC103_M9 male)
ATGTGTGGCGCGCCCGATCATTCGCTCGCCTACGGACTGGTGCAGGGCCG
TTTGGACAAGTGTCGCGGCGATATGCCGTGCGTGAGCACGGCGTCCGTGG
CAAATCCCAGCAAGTTCGGCGCGCCCTGGACGTATCGCCCGCAGACGGAC
GACGCCGACGCCGCGTGGCACGCGCTCAAGGCCGCTTTAGAGGCCAGTCG
CGACCGCGGACGCATCGTCGAGAGCGTGGACGGTCCACAGTTGTATTACC
TTCGCGCCGAGTTTCCGTCATCGTTTCGCGGCGTGGACGACGTGGAGTTT
CGTCTCATTCCGGAAGAGGCGTTGGTGACGTACCGCAGCGCATCCAGAGA
GGCCATTTTCTTGTATCCTTTGCAGACGCCAATTAACACGGACAAGAACA
AGACGCGACTGCTGGACGTTCGTCAGGCGCTTGGGTGGGACGAATTTGCA
GGCTTCAATGTGTTTGGTGTTGACACACCGTTGTCGTGA
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Coding sequence (CDS) from alignment at tig00025222_pilon:558258..558746+

>Gchil3670.t1 ID=Gchil3670.t1|Name=Gchil3670.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=489bp|location=Sequence derived from alignment at tig00025222_pilon:558258..558746+ (Gracilaria chilensis NLEC103_M9 male)
ATGTGTGGCGCGCCCGATCATTCGCTCGCCTACGGACTGGTGCAGGGCCG
TTTGGACAAGTGTCGCGGCGATATGCCGTGCGTGAGCACGGCGTCCGTGG
CAAATCCCAGCAAGTTCGGCGCGCCCTGGACGTATCGCCCGCAGACGGAC
GACGCCGACGCCGCGTGGCACGCGCTCAAGGCCGCTTTAGAGGCCAGTCG
CGACCGCGGACGCATCGTCGAGAGCGTGGACGGTCCACAGTTGTATTACC
TTCGCGCCGAGTTTCCGTCATCGTTTCGCGGCGTGGACGACGTGGAGTTT
CGTCTCATTCCGGAAGAGGCGTTGGTGACGTACCGCAGCGCATCCAGAGA
GGCCATTTTCTTGTATCCTTTGCAGACGCCAATTAACACGGACAAGAACA
AGACGCGACTGCTGGACGTTCGTCAGGCGCTTGGGTGGGACGAATTTGCA
GGCTTCAATGTGTTTGGTGTTGACACACCGTTGTCGTGA
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