Gchil3667.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3667.t1
Unique Name	Gchil3667.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	469

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00025222_pilon	contig	tig00025222_pilon:553169..554575 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3055.EDP08621
Preferred name	TOC34-1
PFAMs	AIG1
Max annot lvl	3041\|Chlorophyta
Evalue	7.12e-10
EggNOG OGs	2CMZ1@1\|root,2QSV2@2759\|Eukaryota,37P6W@33090\|Viridiplantae,34I7I@3041\|Chlorophyta
Description	AIG1 family
COG category	U

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3667	Gchil3667	Gracilaria chilensis NLEC103_M9 male	gene	tig00025222_pilon 553169..554575 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3667.t1.start1	Gchil3667.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00025222_pilon 553169..553171 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3667.t1.CDS1	Gchil3667.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00025222_pilon 553169..554575 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3667.t1.exon1	Gchil3667.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00025222_pilon 553169..554575 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3667.t1.stop1	Gchil3667.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00025222_pilon 554573..554575 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3667.t1	Gchil3667.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00025222_pilon 553169..554575 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00025222_pilon:553169..554575+
coding sequence from alignment at tig00025222_pilon:553169..554575+

mRNA sequence

>Gchil3667.t1 ID=Gchil3667.t1|Name=Gchil3667.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=469bp
MDSDADIDEEKVAAMLLPVEHCKVPELSEQFVDQSSASDAVFRKPRPNQI
LGPVPDAALLDATRAWLVQRDLTLEDLHSCMGLCKILDITENLEGYRKRY
RLFVEGALYADIPLEDLPTMQDIRFERNWPKLICAVAHLARTRDGGQWNA
CLEAAGALHPTHWRDAMRNERWEGDATARQIARLVGSHCTFTVAGTQGSG
KSETVRTLLGRQLFRASHALSYEQDPETLTEEERSDIEKKRHLTAVNWPS
FPILDNMPFGSSKADMAHVKVDGVVLSFLELPEMNTAFDHVDSEGQEVIH
EFGSIEKVQRDIQGEHPRVVFVVERLDDFHEKPFRELVAKLRRLFGNDMF
YRIVIILTHGYSYPPGQMSYQVWVFDQVRQVRECLRKVWKKCPHVPVVVV
ENSEHCPTVEGHRILPNGEDFVQNFINSLDLVLQRGQREFELVPTPLRGW
WECYALVGLIAVLLMRLR*

spliced messenger RNA

>Gchil3667.t1 ID=Gchil3667.t1|Name=Gchil3667.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1407bp|location=Sequence derived from alignment at tig00025222_pilon:553169..554575+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACTCAGACGCTGATATTGACGAGGAAAAAGTGGCTGCGATGTTGCT
ACCTGTAGAGCACTGCAAAGTACCTGAGCTCTCCGAACAGTTCGTAGACC
AAAGCTCAGCATCTGATGCTGTGTTCCGAAAACCACGTCCGAATCAGATT
CTCGGGCCCGTCCCAGATGCGGCCCTGTTGGACGCTACGCGCGCATGGTT
AGTGCAGCGTGATCTGACTCTTGAAGATCTGCATTCTTGTATGGGACTAT
GCAAAATTCTGGACATCACAGAAAATCTTGAAGGCTATCGAAAGAGGTAC
AGATTGTTTGTCGAGGGTGCTCTATACGCAGACATTCCATTAGAAGACCT
TCCTACCATGCAAGATATACGATTTGAGCGTAACTGGCCAAAACTCATTT
GTGCGGTGGCACATCTTGCCCGCACGAGGGATGGGGGGCAATGGAATGCG
TGTCTCGAAGCGGCTGGCGCTTTACACCCGACACACTGGCGTGATGCCAT
GAGGAATGAGAGATGGGAGGGCGACGCCACAGCCCGTCAAATTGCTCGTC
TAGTCGGTTCACACTGCACATTTACTGTGGCCGGCACTCAAGGAAGTGGA
AAATCCGAAACTGTTCGAACTCTTCTTGGCCGGCAATTGTTTCGAGCGTC
ACATGCACTGTCTTACGAGCAAGATCCAGAGACCCTCACAGAGGAAGAAA
GATCTGATATTGAGAAGAAACGACACTTGACTGCGGTGAACTGGCCAAGC
TTCCCAATTCTAGACAACATGCCCTTCGGATCATCAAAAGCTGATATGGC
CCACGTTAAAGTTGACGGAGTCGTTCTTTCATTTTTGGAGCTACCCGAGA
TGAATACTGCATTCGACCATGTGGATAGCGAAGGGCAAGAGGTAATACAC
GAGTTTGGCAGCATAGAAAAAGTTCAACGTGACATACAGGGAGAACACCC
TCGAGTGGTTTTCGTTGTGGAACGTCTAGATGATTTTCATGAGAAACCGT
TTCGAGAACTTGTGGCCAAGCTACGACGCTTGTTCGGAAATGACATGTTT
TACAGAATAGTTATCATCCTCACTCACGGGTATTCATATCCTCCAGGACA
AATGAGCTACCAGGTGTGGGTCTTCGATCAAGTCCGGCAGGTGAGAGAAT
GTTTGAGGAAGGTTTGGAAGAAATGCCCGCACGTTCCTGTGGTTGTGGTG
GAGAACAGTGAGCACTGTCCAACTGTGGAGGGGCACCGTATACTGCCTAA
CGGGGAAGATTTCGTTCAAAACTTTATCAATAGTTTGGATCTTGTTTTGC
AAAGGGGGCAAAGAGAGTTTGAATTAGTCCCAACTCCTCTAAGAGGGTGG
TGGGAATGTTATGCTTTGGTTGGGTTGATAGCAGTGTTGTTGATGCGTCT
TCGGTGA

protein sequence of Gchil3667.t1

>Gchil3667.t1 ID=Gchil3667.t1|Name=Gchil3667.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=469bp
MDSDADIDEEKVAAMLLPVEHCKVPELSEQFVDQSSASDAVFRKPRPNQI
LGPVPDAALLDATRAWLVQRDLTLEDLHSCMGLCKILDITENLEGYRKRY
RLFVEGALYADIPLEDLPTMQDIRFERNWPKLICAVAHLARTRDGGQWNA
CLEAAGALHPTHWRDAMRNERWEGDATARQIARLVGSHCTFTVAGTQGSG
KSETVRTLLGRQLFRASHALSYEQDPETLTEEERSDIEKKRHLTAVNWPS
FPILDNMPFGSSKADMAHVKVDGVVLSFLELPEMNTAFDHVDSEGQEVIH
EFGSIEKVQRDIQGEHPRVVFVVERLDDFHEKPFRELVAKLRRLFGNDMF
YRIVIILTHGYSYPPGQMSYQVWVFDQVRQVRECLRKVWKKCPHVPVVVV
ENSEHCPTVEGHRILPNGEDFVQNFINSLDLVLQRGQREFELVPTPLRGW
WECYALVGLIAVLLMRLR*

mRNA from alignment at tig00025222_pilon:553169..554575+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3667.t1 ID=Gchil3667.t1|Name=Gchil3667.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1407bp|location=Sequence derived from alignment at tig00025222_pilon:553169..554575+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACTCAGACGCTGATATTGACGAGGAAAAAGTGGCTGCGATGTTGCT
ACCTGTAGAGCACTGCAAAGTACCTGAGCTCTCCGAACAGTTCGTAGACC
AAAGCTCAGCATCTGATGCTGTGTTCCGAAAACCACGTCCGAATCAGATT
CTCGGGCCCGTCCCAGATGCGGCCCTGTTGGACGCTACGCGCGCATGGTT
AGTGCAGCGTGATCTGACTCTTGAAGATCTGCATTCTTGTATGGGACTAT
GCAAAATTCTGGACATCACAGAAAATCTTGAAGGCTATCGAAAGAGGTAC
AGATTGTTTGTCGAGGGTGCTCTATACGCAGACATTCCATTAGAAGACCT
TCCTACCATGCAAGATATACGATTTGAGCGTAACTGGCCAAAACTCATTT
GTGCGGTGGCACATCTTGCCCGCACGAGGGATGGGGGGCAATGGAATGCG
TGTCTCGAAGCGGCTGGCGCTTTACACCCGACACACTGGCGTGATGCCAT
GAGGAATGAGAGATGGGAGGGCGACGCCACAGCCCGTCAAATTGCTCGTC
TAGTCGGTTCACACTGCACATTTACTGTGGCCGGCACTCAAGGAAGTGGA
AAATCCGAAACTGTTCGAACTCTTCTTGGCCGGCAATTGTTTCGAGCGTC
ACATGCACTGTCTTACGAGCAAGATCCAGAGACCCTCACAGAGGAAGAAA
GATCTGATATTGAGAAGAAACGACACTTGACTGCGGTGAACTGGCCAAGC
TTCCCAATTCTAGACAACATGCCCTTCGGATCATCAAAAGCTGATATGGC
CCACGTTAAAGTTGACGGAGTCGTTCTTTCATTTTTGGAGCTACCCGAGA
TGAATACTGCATTCGACCATGTGGATAGCGAAGGGCAAGAGGTAATACAC
GAGTTTGGCAGCATAGAAAAAGTTCAACGTGACATACAGGGAGAACACCC
TCGAGTGGTTTTCGTTGTGGAACGTCTAGATGATTTTCATGAGAAACCGT
TTCGAGAACTTGTGGCCAAGCTACGACGCTTGTTCGGAAATGACATGTTT
TACAGAATAGTTATCATCCTCACTCACGGGTATTCATATCCTCCAGGACA
AATGAGCTACCAGGTGTGGGTCTTCGATCAAGTCCGGCAGGTGAGAGAAT
GTTTGAGGAAGGTTTGGAAGAAATGCCCGCACGTTCCTGTGGTTGTGGTG
GAGAACAGTGAGCACTGTCCAACTGTGGAGGGGCACCGTATACTGCCTAA
CGGGGAAGATTTCGTTCAAAACTTTATCAATAGTTTGGATCTTGTTTTGC
AAAGGGGGCAAAGAGAGTTTGAATTAGTCCCAACTCCTCTAAGAGGGTGG
TGGGAATGTTATGCTTTGGTTGGGTTGATAGCAGTGTTGTTGATGCGTCT
TCGGTGA

Coding sequence (CDS) from alignment at tig00025222_pilon:553169..554575+

>Gchil3667.t1 ID=Gchil3667.t1|Name=Gchil3667.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1407bp|location=Sequence derived from alignment at tig00025222_pilon:553169..554575+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACTCAGACGCTGATATTGACGAGGAAAAAGTGGCTGCGATGTTGCT
ACCTGTAGAGCACTGCAAAGTACCTGAGCTCTCCGAACAGTTCGTAGACC
AAAGCTCAGCATCTGATGCTGTGTTCCGAAAACCACGTCCGAATCAGATT
CTCGGGCCCGTCCCAGATGCGGCCCTGTTGGACGCTACGCGCGCATGGTT
AGTGCAGCGTGATCTGACTCTTGAAGATCTGCATTCTTGTATGGGACTAT
GCAAAATTCTGGACATCACAGAAAATCTTGAAGGCTATCGAAAGAGGTAC
AGATTGTTTGTCGAGGGTGCTCTATACGCAGACATTCCATTAGAAGACCT
TCCTACCATGCAAGATATACGATTTGAGCGTAACTGGCCAAAACTCATTT
GTGCGGTGGCACATCTTGCCCGCACGAGGGATGGGGGGCAATGGAATGCG
TGTCTCGAAGCGGCTGGCGCTTTACACCCGACACACTGGCGTGATGCCAT
GAGGAATGAGAGATGGGAGGGCGACGCCACAGCCCGTCAAATTGCTCGTC
TAGTCGGTTCACACTGCACATTTACTGTGGCCGGCACTCAAGGAAGTGGA
AAATCCGAAACTGTTCGAACTCTTCTTGGCCGGCAATTGTTTCGAGCGTC
ACATGCACTGTCTTACGAGCAAGATCCAGAGACCCTCACAGAGGAAGAAA
GATCTGATATTGAGAAGAAACGACACTTGACTGCGGTGAACTGGCCAAGC
TTCCCAATTCTAGACAACATGCCCTTCGGATCATCAAAAGCTGATATGGC
CCACGTTAAAGTTGACGGAGTCGTTCTTTCATTTTTGGAGCTACCCGAGA
TGAATACTGCATTCGACCATGTGGATAGCGAAGGGCAAGAGGTAATACAC
GAGTTTGGCAGCATAGAAAAAGTTCAACGTGACATACAGGGAGAACACCC
TCGAGTGGTTTTCGTTGTGGAACGTCTAGATGATTTTCATGAGAAACCGT
TTCGAGAACTTGTGGCCAAGCTACGACGCTTGTTCGGAAATGACATGTTT
TACAGAATAGTTATCATCCTCACTCACGGGTATTCATATCCTCCAGGACA
AATGAGCTACCAGGTGTGGGTCTTCGATCAAGTCCGGCAGGTGAGAGAAT
GTTTGAGGAAGGTTTGGAAGAAATGCCCGCACGTTCCTGTGGTTGTGGTG
GAGAACAGTGAGCACTGTCCAACTGTGGAGGGGCACCGTATACTGCCTAA
CGGGGAAGATTTCGTTCAAAACTTTATCAATAGTTTGGATCTTGTTTTGC
AAAGGGGGCAAAGAGAGTTTGAATTAGTCCCAACTCCTCTAAGAGGGTGG
TGGGAATGTTATGCTTTGGTTGGGTTGATAGCAGTGTTGTTGATGCGTCT
TCGGTGA