Gchil3664.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3664.t1
Unique Name	Gchil3664.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	675

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00025222_pilon	contig	tig00025222_pilon:544770..546794 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMP267CT
PFAMs	DDHD
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K13619
GOs	GO:0003674,GO:0003824,GO:0004620,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016042,GO:0016298,GO:0016787,GO:0016788,GO:0019637,GO:0031974,GO:0032048,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046337,GO:0046471,GO:0046486,GO:0046872,GO:0070013,GO:0071704,GO:1901575
Evalue	6.09e-62
EggNOG OGs	KOG2308@1\|root,KOG2308@2759\|Eukaryota
Description	phospholipase activity
COG category	S
BRITE	ko00000,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3664	Gchil3664	Gracilaria chilensis NLEC103_M9 male	gene	tig00025222_pilon 544770..546794 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3664.t1.start1	Gchil3664.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00025222_pilon 544770..544772 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3664.t1.CDS1	Gchil3664.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00025222_pilon 544770..546794 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3664.t1.exon1	Gchil3664.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00025222_pilon 544770..546794 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3664.t1.stop1	Gchil3664.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00025222_pilon 546792..546794 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3664.t1	Gchil3664.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00025222_pilon 544770..546794 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00025222_pilon:544770..546794+
coding sequence from alignment at tig00025222_pilon:544770..546794+

mRNA sequence

>Gchil3664.t1 ID=Gchil3664.t1|Name=Gchil3664.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=675bp
MSSSSTILDVDRCLLRDSALLTLVRPDAAGYLYKRSNLSGWYKYWFSLSG
SQLLYFERTRSARRGLLVGTISLFRHKLTIINSIKRRREFEITDAAGKLH
VLRAGSDAEMHWWLHIFTSARNKIPPAKPIAQPFSSANSHANPQLTSSSF
VESHLKVDHVLCIVHGIGVSPDILAANIRHLHESYAQIMEKVFPDVHFRV
EMLPIHWRPALTKLDIHTKLQAVVPRTPVPDDANPLRQFMVHRIVDYVYY
THERYRRHIMREVCSQLNHQLDAFRKRRPDFDGTISIMGHSLGAALCYDL
MCRKVYDDQVLLESEGMRLHFDAANLFCVGNPLGTFLGLDPSIGLNADLY
KLPFRIFNIYKFHDPVATRLEPLKDIERANRPPVVIPCWFNMGLRETTSQ
WLGGLWPGQKKGSGADAEPSVPPSPAGFPNLTEEQQVSANEPLRRLSRSP
SRPSLDYTLSEADHGSQVRPHSTGEFSPRKDSDLYDENEGASGAFDSPVR
LDYALQMSSTIEDLSTSWSALKAHTDYWENRDTMLFMVSRMLKSSFEISD
DTDDGVASSLADRIIDEDIMMKRQHESMKNDAKWGHEESEEVLLDDTVRQ
VVERVVDEAVATHELMKLHPNVRMTHGGIAGRSPAASKANMNVDSSESNN
ADSYSGWAAYLRSGWFGSDSNSKK*

spliced messenger RNA

>Gchil3664.t1 ID=Gchil3664.t1|Name=Gchil3664.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2025bp|location=Sequence derived from alignment at tig00025222_pilon:544770..546794+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCTTCTTCCACCATTCTCGACGTCGATCGATGTCTGCTCCGCGA
CAGCGCGCTGCTCACGCTCGTCCGTCCCGACGCAGCCGGCTACCTCTACA
AGCGCTCCAACTTGTCCGGCTGGTACAAGTACTGGTTCTCTCTTTCCGGC
TCGCAGCTCTTGTACTTTGAGCGCACCAGGTCGGCGCGCCGCGGTTTGCT
CGTCGGCACCATCTCTCTCTTCCGACACAAGCTAACTATCATCAACTCCA
TCAAGCGTCGCCGAGAATTTGAAATCACCGACGCCGCCGGCAAGCTGCAC
GTGCTTCGCGCCGGCTCCGACGCCGAAATGCACTGGTGGCTCCACATCTT
CACCTCAGCTCGCAACAAAATTCCGCCCGCAAAGCCCATCGCCCAGCCGT
TTTCCTCTGCAAACTCCCACGCCAACCCGCAGCTCACCTCGTCGTCCTTT
GTCGAGTCCCACCTCAAGGTTGATCACGTCCTGTGCATCGTGCACGGTAT
CGGTGTCAGTCCTGACATTCTCGCCGCAAACATTCGCCATCTGCACGAAA
GCTATGCCCAAATCATGGAAAAGGTCTTTCCCGACGTGCACTTCCGCGTC
GAGATGTTGCCCATACACTGGAGACCGGCGCTTACCAAGCTCGACATTCA
CACAAAGCTGCAGGCCGTCGTGCCGAGGACCCCGGTCCCGGATGACGCCA
ATCCATTGCGTCAGTTCATGGTGCATCGTATCGTCGACTATGTGTACTAC
ACTCATGAACGATATCGCCGTCACATCATGAGAGAAGTGTGCTCTCAATT
GAACCACCAGCTGGACGCTTTCCGCAAACGTAGACCCGACTTTGACGGCA
CCATCAGCATCATGGGACACTCGTTAGGCGCCGCACTGTGCTACGACCTC
ATGTGCCGCAAGGTGTACGACGATCAAGTGCTGCTTGAATCCGAAGGAAT
GCGACTTCATTTCGATGCAGCCAACCTATTCTGCGTCGGCAATCCCCTCG
GCACTTTTCTGGGACTAGATCCCTCAATTGGTCTCAATGCCGATTTGTAC
AAGTTACCTTTTCGCATTTTCAATATATACAAGTTTCACGATCCTGTTGC
CACGCGATTGGAACCTCTAAAGGACATCGAGAGAGCCAATCGGCCCCCTG
TTGTCATCCCATGCTGGTTTAATATGGGCCTGCGCGAAACCACGTCCCAA
TGGCTTGGTGGGCTGTGGCCAGGTCAGAAAAAGGGCTCGGGAGCAGATGC
CGAGCCTTCAGTTCCCCCAAGCCCCGCAGGCTTTCCGAATCTCACTGAAG
AACAGCAAGTATCCGCAAATGAGCCGCTGCGAAGACTGTCTCGATCGCCG
TCCAGACCGTCTCTGGACTATACCTTGTCCGAAGCGGACCATGGCTCGCA
AGTGCGACCCCATTCCACTGGGGAGTTCTCACCGCGAAAGGACAGCGATC
TATATGACGAAAACGAGGGTGCGTCAGGTGCGTTTGACAGCCCGGTGCGA
CTTGATTACGCGCTGCAAATGTCTTCGACGATAGAAGACTTATCCACAAG
CTGGAGCGCGTTGAAGGCACATACAGACTATTGGGAAAATCGGGATACGA
TGCTGTTCATGGTAAGTCGGATGTTGAAGAGTTCGTTTGAGATTTCCGAT
GATACTGATGACGGAGTGGCGAGCAGTTTGGCAGATCGCATCATCGATGA
GGATATCATGATGAAGAGACAGCATGAAAGCATGAAGAATGATGCAAAAT
GGGGGCATGAGGAGTCTGAAGAGGTGTTGCTGGATGATACGGTGCGACAG
GTGGTTGAACGCGTGGTCGACGAGGCGGTTGCGACTCATGAGTTGATGAA
GTTACACCCCAACGTTCGCATGACACACGGAGGCATTGCTGGAAGATCGC
CGGCTGCGAGTAAGGCAAACATGAACGTAGATAGTAGTGAGAGTAATAAC
GCGGACAGCTACAGCGGGTGGGCGGCTTATTTGAGGAGTGGGTGGTTTGG
AAGCGATAGCAATAGCAAGAAGTGA

protein sequence of Gchil3664.t1

>Gchil3664.t1 ID=Gchil3664.t1|Name=Gchil3664.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=675bp
MSSSSTILDVDRCLLRDSALLTLVRPDAAGYLYKRSNLSGWYKYWFSLSG
SQLLYFERTRSARRGLLVGTISLFRHKLTIINSIKRRREFEITDAAGKLH
VLRAGSDAEMHWWLHIFTSARNKIPPAKPIAQPFSSANSHANPQLTSSSF
VESHLKVDHVLCIVHGIGVSPDILAANIRHLHESYAQIMEKVFPDVHFRV
EMLPIHWRPALTKLDIHTKLQAVVPRTPVPDDANPLRQFMVHRIVDYVYY
THERYRRHIMREVCSQLNHQLDAFRKRRPDFDGTISIMGHSLGAALCYDL
MCRKVYDDQVLLESEGMRLHFDAANLFCVGNPLGTFLGLDPSIGLNADLY
KLPFRIFNIYKFHDPVATRLEPLKDIERANRPPVVIPCWFNMGLRETTSQ
WLGGLWPGQKKGSGADAEPSVPPSPAGFPNLTEEQQVSANEPLRRLSRSP
SRPSLDYTLSEADHGSQVRPHSTGEFSPRKDSDLYDENEGASGAFDSPVR
LDYALQMSSTIEDLSTSWSALKAHTDYWENRDTMLFMVSRMLKSSFEISD
DTDDGVASSLADRIIDEDIMMKRQHESMKNDAKWGHEESEEVLLDDTVRQ
VVERVVDEAVATHELMKLHPNVRMTHGGIAGRSPAASKANMNVDSSESNN
ADSYSGWAAYLRSGWFGSDSNSKK*

mRNA from alignment at tig00025222_pilon:544770..546794+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3664.t1 ID=Gchil3664.t1|Name=Gchil3664.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2025bp|location=Sequence derived from alignment at tig00025222_pilon:544770..546794+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGTCTTCTTCCACCATTCTCGACGTCGATCGATGTCTGCTCCGCGA
CAGCGCGCTGCTCACGCTCGTCCGTCCCGACGCAGCCGGCTACCTCTACA
AGCGCTCCAACTTGTCCGGCTGGTACAAGTACTGGTTCTCTCTTTCCGGC
TCGCAGCTCTTGTACTTTGAGCGCACCAGGTCGGCGCGCCGCGGTTTGCT
CGTCGGCACCATCTCTCTCTTCCGACACAAGCTAACTATCATCAACTCCA
TCAAGCGTCGCCGAGAATTTGAAATCACCGACGCCGCCGGCAAGCTGCAC
GTGCTTCGCGCCGGCTCCGACGCCGAAATGCACTGGTGGCTCCACATCTT
CACCTCAGCTCGCAACAAAATTCCGCCCGCAAAGCCCATCGCCCAGCCGT
TTTCCTCTGCAAACTCCCACGCCAACCCGCAGCTCACCTCGTCGTCCTTT
GTCGAGTCCCACCTCAAGGTTGATCACGTCCTGTGCATCGTGCACGGTAT
CGGTGTCAGTCCTGACATTCTCGCCGCAAACATTCGCCATCTGCACGAAA
GCTATGCCCAAATCATGGAAAAGGTCTTTCCCGACGTGCACTTCCGCGTC
GAGATGTTGCCCATACACTGGAGACCGGCGCTTACCAAGCTCGACATTCA
CACAAAGCTGCAGGCCGTCGTGCCGAGGACCCCGGTCCCGGATGACGCCA
ATCCATTGCGTCAGTTCATGGTGCATCGTATCGTCGACTATGTGTACTAC
ACTCATGAACGATATCGCCGTCACATCATGAGAGAAGTGTGCTCTCAATT
GAACCACCAGCTGGACGCTTTCCGCAAACGTAGACCCGACTTTGACGGCA
CCATCAGCATCATGGGACACTCGTTAGGCGCCGCACTGTGCTACGACCTC
ATGTGCCGCAAGGTGTACGACGATCAAGTGCTGCTTGAATCCGAAGGAAT
GCGACTTCATTTCGATGCAGCCAACCTATTCTGCGTCGGCAATCCCCTCG
GCACTTTTCTGGGACTAGATCCCTCAATTGGTCTCAATGCCGATTTGTAC
AAGTTACCTTTTCGCATTTTCAATATATACAAGTTTCACGATCCTGTTGC
CACGCGATTGGAACCTCTAAAGGACATCGAGAGAGCCAATCGGCCCCCTG
TTGTCATCCCATGCTGGTTTAATATGGGCCTGCGCGAAACCACGTCCCAA
TGGCTTGGTGGGCTGTGGCCAGGTCAGAAAAAGGGCTCGGGAGCAGATGC
CGAGCCTTCAGTTCCCCCAAGCCCCGCAGGCTTTCCGAATCTCACTGAAG
AACAGCAAGTATCCGCAAATGAGCCGCTGCGAAGACTGTCTCGATCGCCG
TCCAGACCGTCTCTGGACTATACCTTGTCCGAAGCGGACCATGGCTCGCA
AGTGCGACCCCATTCCACTGGGGAGTTCTCACCGCGAAAGGACAGCGATC
TATATGACGAAAACGAGGGTGCGTCAGGTGCGTTTGACAGCCCGGTGCGA
CTTGATTACGCGCTGCAAATGTCTTCGACGATAGAAGACTTATCCACAAG
CTGGAGCGCGTTGAAGGCACATACAGACTATTGGGAAAATCGGGATACGA
TGCTGTTCATGGTAAGTCGGATGTTGAAGAGTTCGTTTGAGATTTCCGAT
GATACTGATGACGGAGTGGCGAGCAGTTTGGCAGATCGCATCATCGATGA
GGATATCATGATGAAGAGACAGCATGAAAGCATGAAGAATGATGCAAAAT
GGGGGCATGAGGAGTCTGAAGAGGTGTTGCTGGATGATACGGTGCGACAG
GTGGTTGAACGCGTGGTCGACGAGGCGGTTGCGACTCATGAGTTGATGAA
GTTACACCCCAACGTTCGCATGACACACGGAGGCATTGCTGGAAGATCGC
CGGCTGCGAGTAAGGCAAACATGAACGTAGATAGTAGTGAGAGTAATAAC
GCGGACAGCTACAGCGGGTGGGCGGCTTATTTGAGGAGTGGGTGGTTTGG
AAGCGATAGCAATAGCAAGAAGTGA

Coding sequence (CDS) from alignment at tig00025222_pilon:544770..546794+

>Gchil3664.t1 ID=Gchil3664.t1|Name=Gchil3664.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2025bp|location=Sequence derived from alignment at tig00025222_pilon:544770..546794+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGTCTTCTTCCACCATTCTCGACGTCGATCGATGTCTGCTCCGCGA
CAGCGCGCTGCTCACGCTCGTCCGTCCCGACGCAGCCGGCTACCTCTACA
AGCGCTCCAACTTGTCCGGCTGGTACAAGTACTGGTTCTCTCTTTCCGGC
TCGCAGCTCTTGTACTTTGAGCGCACCAGGTCGGCGCGCCGCGGTTTGCT
CGTCGGCACCATCTCTCTCTTCCGACACAAGCTAACTATCATCAACTCCA
TCAAGCGTCGCCGAGAATTTGAAATCACCGACGCCGCCGGCAAGCTGCAC
GTGCTTCGCGCCGGCTCCGACGCCGAAATGCACTGGTGGCTCCACATCTT
CACCTCAGCTCGCAACAAAATTCCGCCCGCAAAGCCCATCGCCCAGCCGT
TTTCCTCTGCAAACTCCCACGCCAACCCGCAGCTCACCTCGTCGTCCTTT
GTCGAGTCCCACCTCAAGGTTGATCACGTCCTGTGCATCGTGCACGGTAT
CGGTGTCAGTCCTGACATTCTCGCCGCAAACATTCGCCATCTGCACGAAA
GCTATGCCCAAATCATGGAAAAGGTCTTTCCCGACGTGCACTTCCGCGTC
GAGATGTTGCCCATACACTGGAGACCGGCGCTTACCAAGCTCGACATTCA
CACAAAGCTGCAGGCCGTCGTGCCGAGGACCCCGGTCCCGGATGACGCCA
ATCCATTGCGTCAGTTCATGGTGCATCGTATCGTCGACTATGTGTACTAC
ACTCATGAACGATATCGCCGTCACATCATGAGAGAAGTGTGCTCTCAATT
GAACCACCAGCTGGACGCTTTCCGCAAACGTAGACCCGACTTTGACGGCA
CCATCAGCATCATGGGACACTCGTTAGGCGCCGCACTGTGCTACGACCTC
ATGTGCCGCAAGGTGTACGACGATCAAGTGCTGCTTGAATCCGAAGGAAT
GCGACTTCATTTCGATGCAGCCAACCTATTCTGCGTCGGCAATCCCCTCG
GCACTTTTCTGGGACTAGATCCCTCAATTGGTCTCAATGCCGATTTGTAC
AAGTTACCTTTTCGCATTTTCAATATATACAAGTTTCACGATCCTGTTGC
CACGCGATTGGAACCTCTAAAGGACATCGAGAGAGCCAATCGGCCCCCTG
TTGTCATCCCATGCTGGTTTAATATGGGCCTGCGCGAAACCACGTCCCAA
TGGCTTGGTGGGCTGTGGCCAGGTCAGAAAAAGGGCTCGGGAGCAGATGC
CGAGCCTTCAGTTCCCCCAAGCCCCGCAGGCTTTCCGAATCTCACTGAAG
AACAGCAAGTATCCGCAAATGAGCCGCTGCGAAGACTGTCTCGATCGCCG
TCCAGACCGTCTCTGGACTATACCTTGTCCGAAGCGGACCATGGCTCGCA
AGTGCGACCCCATTCCACTGGGGAGTTCTCACCGCGAAAGGACAGCGATC
TATATGACGAAAACGAGGGTGCGTCAGGTGCGTTTGACAGCCCGGTGCGA
CTTGATTACGCGCTGCAAATGTCTTCGACGATAGAAGACTTATCCACAAG
CTGGAGCGCGTTGAAGGCACATACAGACTATTGGGAAAATCGGGATACGA
TGCTGTTCATGGTAAGTCGGATGTTGAAGAGTTCGTTTGAGATTTCCGAT
GATACTGATGACGGAGTGGCGAGCAGTTTGGCAGATCGCATCATCGATGA
GGATATCATGATGAAGAGACAGCATGAAAGCATGAAGAATGATGCAAAAT
GGGGGCATGAGGAGTCTGAAGAGGTGTTGCTGGATGATACGGTGCGACAG
GTGGTTGAACGCGTGGTCGACGAGGCGGTTGCGACTCATGAGTTGATGAA
GTTACACCCCAACGTTCGCATGACACACGGAGGCATTGCTGGAAGATCGC
CGGCTGCGAGTAAGGCAAACATGAACGTAGATAGTAGTGAGAGTAATAAC
GCGGACAGCTACAGCGGGTGGGCGGCTTATTTGAGGAGTGGGTGGTTTGG
AAGCGATAGCAATAGCAAGAAGTGA