Gchil366.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil366.t1
Unique Name	Gchil366.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	288

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000212_pilon	contig	tig00000212_pilon:635321..636184 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMM126CT
Max annot lvl	45157.CMM126CT\|-
Evalue	3.22e-36
EggNOG OGs	KOG3071@1\|root,KOG3071@2759\|Eukaryota
Description	fatty acid elongation, saturated fatty acid
COG category	I

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil366	Gchil366	Gracilaria chilensis NLEC103_M9 male	gene	tig00000212_pilon 635321..636184 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil366.t1.start1	Gchil366.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000212_pilon 635321..635323 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil366.t1.CDS1	Gchil366.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000212_pilon 635321..636184 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil366.t1.exon1	Gchil366.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000212_pilon 635321..636184 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil366.t1.stop1	Gchil366.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000212_pilon 636182..636184 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil366.t1	Gchil366.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000212_pilon 635321..636184 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000212_pilon:635321..636184+
coding sequence from alignment at tig00000212_pilon:635321..636184+

mRNA sequence

>Gchil366.t1 ID=Gchil366.t1|Name=Gchil366.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=288bp
MSSHVRAFRAGWSSVTSGSPSLTAFVSRLVHASSPASAPFLSDLRLVLLI
IIAYLILLHVVRSHQTLLLRDARFVTNVAIVHNLVLAAASAFMNVHATRA
ILWVLHAHKWHATVCTPTQSPLPQPILATFYLFYLSKFYELLDTFILVTR
GKSLSLLHVWHHSSVILSVWGWLEYGVTIGVYGLWFNTFVHVIMYTYFAL
RLARVKMPFKRLITLTQIVQFLTGFASLIPFTWSYVKHGGCTGLPGLAIT
AAINFSYLVLFLRFYSKSYESAAGKPKSSPSETRKAR*

spliced messenger RNA

>Gchil366.t1 ID=Gchil366.t1|Name=Gchil366.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=864bp|location=Sequence derived from alignment at tig00000212_pilon:635321..636184+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCCCACGTCCGTGCCTTTCGCGCCGGCTGGTCAAGTGTCACCAG
CGGCTCCCCCTCGCTCACCGCCTTTGTCTCGCGTCTTGTTCACGCGTCCT
CGCCCGCCTCCGCACCGTTTCTCTCCGATTTGCGTCTGGTTCTGCTCATC
ATTATCGCGTATCTCATTCTTTTGCACGTCGTTCGCTCACACCAAACCCT
CCTTCTGCGCGACGCGCGTTTCGTCACAAATGTGGCCATCGTGCATAATC
TTGTTTTGGCCGCCGCCTCCGCCTTCATGAATGTGCACGCCACCCGCGCC
ATCTTGTGGGTGCTACATGCCCACAAATGGCATGCCACTGTGTGTACGCC
GACGCAATCGCCCCTTCCGCAACCCATTCTGGCTACGTTTTATCTCTTCT
ATCTCAGCAAGTTTTATGAGCTCCTTGATACCTTCATTCTTGTCACGCGA
GGCAAGTCGCTTTCCTTGCTCCACGTATGGCATCACTCCTCCGTCATACT
CTCCGTGTGGGGATGGTTGGAATACGGTGTGACCATCGGCGTTTATGGAC
TTTGGTTTAATACTTTTGTGCATGTCATCATGTATACCTATTTTGCACTT
CGTCTGGCGCGTGTCAAGATGCCGTTTAAACGACTCATCACCCTTACGCA
GATTGTTCAATTTCTCACCGGCTTTGCATCGTTAATACCCTTCACATGGA
GTTACGTCAAGCATGGAGGCTGTACTGGCTTGCCGGGCCTTGCCATTACC
GCCGCCATTAACTTCTCTTACCTTGTTTTGTTTCTTCGTTTTTATTCCAA
GTCTTACGAATCGGCCGCCGGAAAACCAAAGTCCTCCCCTTCCGAGACAA
GAAAGGCGCGTTGA

protein sequence of Gchil366.t1

>Gchil366.t1 ID=Gchil366.t1|Name=Gchil366.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=288bp
MSSHVRAFRAGWSSVTSGSPSLTAFVSRLVHASSPASAPFLSDLRLVLLI
IIAYLILLHVVRSHQTLLLRDARFVTNVAIVHNLVLAAASAFMNVHATRA
ILWVLHAHKWHATVCTPTQSPLPQPILATFYLFYLSKFYELLDTFILVTR
GKSLSLLHVWHHSSVILSVWGWLEYGVTIGVYGLWFNTFVHVIMYTYFAL
RLARVKMPFKRLITLTQIVQFLTGFASLIPFTWSYVKHGGCTGLPGLAIT
AAINFSYLVLFLRFYSKSYESAAGKPKSSPSETRKAR*

mRNA from alignment at tig00000212_pilon:635321..636184+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil366.t1 ID=Gchil366.t1|Name=Gchil366.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=864bp|location=Sequence derived from alignment at tig00000212_pilon:635321..636184+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGTCCCACGTCCGTGCCTTTCGCGCCGGCTGGTCAAGTGTCACCAG
CGGCTCCCCCTCGCTCACCGCCTTTGTCTCGCGTCTTGTTCACGCGTCCT
CGCCCGCCTCCGCACCGTTTCTCTCCGATTTGCGTCTGGTTCTGCTCATC
ATTATCGCGTATCTCATTCTTTTGCACGTCGTTCGCTCACACCAAACCCT
CCTTCTGCGCGACGCGCGTTTCGTCACAAATGTGGCCATCGTGCATAATC
TTGTTTTGGCCGCCGCCTCCGCCTTCATGAATGTGCACGCCACCCGCGCC
ATCTTGTGGGTGCTACATGCCCACAAATGGCATGCCACTGTGTGTACGCC
GACGCAATCGCCCCTTCCGCAACCCATTCTGGCTACGTTTTATCTCTTCT
ATCTCAGCAAGTTTTATGAGCTCCTTGATACCTTCATTCTTGTCACGCGA
GGCAAGTCGCTTTCCTTGCTCCACGTATGGCATCACTCCTCCGTCATACT
CTCCGTGTGGGGATGGTTGGAATACGGTGTGACCATCGGCGTTTATGGAC
TTTGGTTTAATACTTTTGTGCATGTCATCATGTATACCTATTTTGCACTT
CGTCTGGCGCGTGTCAAGATGCCGTTTAAACGACTCATCACCCTTACGCA
GATTGTTCAATTTCTCACCGGCTTTGCATCGTTAATACCCTTCACATGGA
GTTACGTCAAGCATGGAGGCTGTACTGGCTTGCCGGGCCTTGCCATTACC
GCCGCCATTAACTTCTCTTACCTTGTTTTGTTTCTTCGTTTTTATTCCAA
GTCTTACGAATCGGCCGCCGGAAAACCAAAGTCCTCCCCTTCCGAGACAA
GAAAGGCGCGTTGA

Coding sequence (CDS) from alignment at tig00000212_pilon:635321..636184+

>Gchil366.t1 ID=Gchil366.t1|Name=Gchil366.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=864bp|location=Sequence derived from alignment at tig00000212_pilon:635321..636184+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGTCCCACGTCCGTGCCTTTCGCGCCGGCTGGTCAAGTGTCACCAG
CGGCTCCCCCTCGCTCACCGCCTTTGTCTCGCGTCTTGTTCACGCGTCCT
CGCCCGCCTCCGCACCGTTTCTCTCCGATTTGCGTCTGGTTCTGCTCATC
ATTATCGCGTATCTCATTCTTTTGCACGTCGTTCGCTCACACCAAACCCT
CCTTCTGCGCGACGCGCGTTTCGTCACAAATGTGGCCATCGTGCATAATC
TTGTTTTGGCCGCCGCCTCCGCCTTCATGAATGTGCACGCCACCCGCGCC
ATCTTGTGGGTGCTACATGCCCACAAATGGCATGCCACTGTGTGTACGCC
GACGCAATCGCCCCTTCCGCAACCCATTCTGGCTACGTTTTATCTCTTCT
ATCTCAGCAAGTTTTATGAGCTCCTTGATACCTTCATTCTTGTCACGCGA
GGCAAGTCGCTTTCCTTGCTCCACGTATGGCATCACTCCTCCGTCATACT
CTCCGTGTGGGGATGGTTGGAATACGGTGTGACCATCGGCGTTTATGGAC
TTTGGTTTAATACTTTTGTGCATGTCATCATGTATACCTATTTTGCACTT
CGTCTGGCGCGTGTCAAGATGCCGTTTAAACGACTCATCACCCTTACGCA
GATTGTTCAATTTCTCACCGGCTTTGCATCGTTAATACCCTTCACATGGA
GTTACGTCAAGCATGGAGGCTGTACTGGCTTGCCGGGCCTTGCCATTACC
GCCGCCATTAACTTCTCTTACCTTGTTTTGTTTCTTCGTTTTTATTCCAA
GTCTTACGAATCGGCCGCCGGAAAACCAAAGTCCTCCCCTTCCGAGACAA
GAAAGGCGCGTTGA