Gchil3652.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3652.t1
Unique NameGchil3652.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length463
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025222_piloncontigtig00025222_pilon:433459..434847 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705373.1
Preferred nameEIF2S3
PFAMsChromo,GTP_EFTU,GTP_EFTU_D2,Pre-SET,SET,eIF2_C
Max annot lvl2759|Eukaryota
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K03242,ko:K11419
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko03013,map00310,map03013
GOsGO:0001731,GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0003824,GO:0003924,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005850,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0006810,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016282,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043614,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0065003,GO:0070993,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue8.86e-263
EggNOG OGsCOG3276@1|root,KOG0466@2759|Eukaryota
EC2.1.1.43
Descriptiontranslation initiation factor activity
COG categoryJ
BRITEko00000,ko00001,ko01000,ko03012,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3652Gchil3652Gracilaria chilensis NLEC103_M9 malegenetig00025222_pilon 433459..434847 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3652.t1.stop1Gchil3652.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025222_pilon 433459..433461 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3652.t1.CDS1Gchil3652.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 433459..434847 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3652.t1.exon1Gchil3652.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 433459..434847 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3652.t1.start1Gchil3652.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025222_pilon 434845..434847 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3652.t1Gchil3652.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025222_pilon 433459..434847 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3652.t1 ID=Gchil3652.t1|Name=Gchil3652.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=463bp
MADPRGLAEQDLSTLDVHSLTPLSPNVISRQATINIGTIGHVAHGKSTVV
KAISGVQTVRFKTEHERNITIKLGYANAKLYKCSDPVCPRPSCYRAYGSA
KEDAPLCEVPGCGASMQLMRHVSFVDCPGHDILMATMLNGAAVMDAALLL
IAGNEPCPQPQTSEHLAAVEIMKLRNIIILQNKIDLVKGTHAEAQSEQIR
EFTRGTVADGSPIIPISAQLKYNIDVVVEYLIKKVPVPLRDFTSSPRMIV
IRSFDVNKPGEEVDNLKGGVAGGSIMQGVLKVGDAIEVRPGITFRDANGK
MACSPIMSVIRSMHAEQNDLQYAAPGGLIGVGTKIDPTLTRADRLVGAVL
GARGHLPDVYCELEVNFFLLRRLLGMKTEGDSKQAKVSKLNKGEMLMVNI
GSTSTGGKVLAVKRDLAKFTLSNPVCTSVDEKIALSRRIDKHWRLIGWGR
IRAGSTINLSSS*
back to top

spliced messenger RNA

>Gchil3652.t1 ID=Gchil3652.t1|Name=Gchil3652.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1389bp|location=Sequence derived from alignment at tig00025222_pilon:433459..434847- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGACCCCCGCGGACTGGCCGAGCAGGATCTGTCCACACTCGACGT
GCACTCCCTCACCCCACTCTCGCCAAACGTCATCTCGCGCCAGGCCACCA
TCAACATCGGCACCATCGGCCATGTGGCCCACGGAAAGTCTACCGTCGTA
AAGGCTATCTCCGGCGTGCAGACGGTCCGCTTCAAAACCGAGCATGAGCG
AAACATCACCATCAAGCTCGGTTACGCCAACGCCAAGCTGTACAAGTGCA
GCGATCCGGTCTGCCCGAGGCCATCGTGCTATCGCGCTTACGGATCGGCG
AAAGAGGATGCCCCCCTCTGCGAGGTCCCTGGCTGCGGCGCCTCCATGCA
GCTCATGAGGCACGTCAGCTTCGTCGACTGCCCTGGCCATGACATTCTCA
TGGCCACCATGCTCAACGGCGCCGCCGTCATGGACGCCGCTTTATTGCTT
ATTGCCGGTAATGAGCCCTGTCCGCAGCCGCAGACCAGCGAGCATTTGGC
CGCCGTCGAGATCATGAAGCTCAGAAACATAATCATTCTTCAAAACAAGA
TCGATCTCGTCAAGGGCACCCACGCAGAGGCTCAATCCGAACAGATTCGC
GAATTCACTCGAGGAACCGTCGCCGACGGATCCCCCATCATTCCCATCTC
GGCCCAACTCAAGTACAACATCGACGTTGTTGTCGAGTATCTCATCAAGA
AGGTGCCCGTTCCCCTCAGAGACTTCACCAGCTCTCCGAGAATGATAGTT
ATTCGAAGTTTTGATGTTAACAAACCGGGAGAGGAGGTCGACAATTTGAA
GGGCGGCGTTGCCGGTGGCTCCATCATGCAGGGCGTTCTTAAGGTTGGTG
ACGCCATTGAGGTCAGACCGGGCATCACCTTTCGCGACGCCAATGGAAAG
ATGGCCTGTAGTCCTATCATGAGTGTCATTCGCTCTATGCACGCTGAGCA
AAATGATTTGCAGTATGCGGCGCCAGGTGGACTCATCGGTGTTGGTACAA
AGATTGACCCAACTCTTACAAGGGCCGACCGTCTTGTTGGAGCTGTGCTT
GGTGCACGAGGACACTTGCCAGATGTCTATTGCGAGCTTGAGGTTAACTT
CTTTTTACTGAGACGTCTATTAGGTATGAAGACTGAAGGCGATAGTAAGC
AGGCCAAGGTTTCGAAACTTAACAAAGGTGAAATGCTTATGGTCAACATT
GGTAGTACTAGTACGGGAGGCAAAGTTCTTGCTGTCAAAAGAGATTTGGC
CAAGTTTACCCTTTCAAACCCCGTTTGCACCTCGGTGGACGAAAAGATCG
CCCTGTCCAGAAGGATTGATAAGCACTGGCGTCTCATTGGATGGGGTCGA
ATTCGTGCCGGATCAACAATCAACTTGTCCTCATCATAA
back to top

protein sequence of Gchil3652.t1

>Gchil3652.t1 ID=Gchil3652.t1|Name=Gchil3652.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=463bp
MADPRGLAEQDLSTLDVHSLTPLSPNVISRQATINIGTIGHVAHGKSTVV
KAISGVQTVRFKTEHERNITIKLGYANAKLYKCSDPVCPRPSCYRAYGSA
KEDAPLCEVPGCGASMQLMRHVSFVDCPGHDILMATMLNGAAVMDAALLL
IAGNEPCPQPQTSEHLAAVEIMKLRNIIILQNKIDLVKGTHAEAQSEQIR
EFTRGTVADGSPIIPISAQLKYNIDVVVEYLIKKVPVPLRDFTSSPRMIV
IRSFDVNKPGEEVDNLKGGVAGGSIMQGVLKVGDAIEVRPGITFRDANGK
MACSPIMSVIRSMHAEQNDLQYAAPGGLIGVGTKIDPTLTRADRLVGAVL
GARGHLPDVYCELEVNFFLLRRLLGMKTEGDSKQAKVSKLNKGEMLMVNI
GSTSTGGKVLAVKRDLAKFTLSNPVCTSVDEKIALSRRIDKHWRLIGWGR
IRAGSTINLSSS*
back to top

mRNA from alignment at tig00025222_pilon:433459..434847-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3652.t1 ID=Gchil3652.t1|Name=Gchil3652.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1389bp|location=Sequence derived from alignment at tig00025222_pilon:433459..434847- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGACCCCCGCGGACTGGCCGAGCAGGATCTGTCCACACTCGACGT
GCACTCCCTCACCCCACTCTCGCCAAACGTCATCTCGCGCCAGGCCACCA
TCAACATCGGCACCATCGGCCATGTGGCCCACGGAAAGTCTACCGTCGTA
AAGGCTATCTCCGGCGTGCAGACGGTCCGCTTCAAAACCGAGCATGAGCG
AAACATCACCATCAAGCTCGGTTACGCCAACGCCAAGCTGTACAAGTGCA
GCGATCCGGTCTGCCCGAGGCCATCGTGCTATCGCGCTTACGGATCGGCG
AAAGAGGATGCCCCCCTCTGCGAGGTCCCTGGCTGCGGCGCCTCCATGCA
GCTCATGAGGCACGTCAGCTTCGTCGACTGCCCTGGCCATGACATTCTCA
TGGCCACCATGCTCAACGGCGCCGCCGTCATGGACGCCGCTTTATTGCTT
ATTGCCGGTAATGAGCCCTGTCCGCAGCCGCAGACCAGCGAGCATTTGGC
CGCCGTCGAGATCATGAAGCTCAGAAACATAATCATTCTTCAAAACAAGA
TCGATCTCGTCAAGGGCACCCACGCAGAGGCTCAATCCGAACAGATTCGC
GAATTCACTCGAGGAACCGTCGCCGACGGATCCCCCATCATTCCCATCTC
GGCCCAACTCAAGTACAACATCGACGTTGTTGTCGAGTATCTCATCAAGA
AGGTGCCCGTTCCCCTCAGAGACTTCACCAGCTCTCCGAGAATGATAGTT
ATTCGAAGTTTTGATGTTAACAAACCGGGAGAGGAGGTCGACAATTTGAA
GGGCGGCGTTGCCGGTGGCTCCATCATGCAGGGCGTTCTTAAGGTTGGTG
ACGCCATTGAGGTCAGACCGGGCATCACCTTTCGCGACGCCAATGGAAAG
ATGGCCTGTAGTCCTATCATGAGTGTCATTCGCTCTATGCACGCTGAGCA
AAATGATTTGCAGTATGCGGCGCCAGGTGGACTCATCGGTGTTGGTACAA
AGATTGACCCAACTCTTACAAGGGCCGACCGTCTTGTTGGAGCTGTGCTT
GGTGCACGAGGACACTTGCCAGATGTCTATTGCGAGCTTGAGGTTAACTT
CTTTTTACTGAGACGTCTATTAGGTATGAAGACTGAAGGCGATAGTAAGC
AGGCCAAGGTTTCGAAACTTAACAAAGGTGAAATGCTTATGGTCAACATT
GGTAGTACTAGTACGGGAGGCAAAGTTCTTGCTGTCAAAAGAGATTTGGC
CAAGTTTACCCTTTCAAACCCCGTTTGCACCTCGGTGGACGAAAAGATCG
CCCTGTCCAGAAGGATTGATAAGCACTGGCGTCTCATTGGATGGGGTCGA
ATTCGTGCCGGATCAACAATCAACTTGTCCTCATCATAA
back to top

Coding sequence (CDS) from alignment at tig00025222_pilon:433459..434847-

>Gchil3652.t1 ID=Gchil3652.t1|Name=Gchil3652.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1389bp|location=Sequence derived from alignment at tig00025222_pilon:433459..434847- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGACCCCCGCGGACTGGCCGAGCAGGATCTGTCCACACTCGACGT
GCACTCCCTCACCCCACTCTCGCCAAACGTCATCTCGCGCCAGGCCACCA
TCAACATCGGCACCATCGGCCATGTGGCCCACGGAAAGTCTACCGTCGTA
AAGGCTATCTCCGGCGTGCAGACGGTCCGCTTCAAAACCGAGCATGAGCG
AAACATCACCATCAAGCTCGGTTACGCCAACGCCAAGCTGTACAAGTGCA
GCGATCCGGTCTGCCCGAGGCCATCGTGCTATCGCGCTTACGGATCGGCG
AAAGAGGATGCCCCCCTCTGCGAGGTCCCTGGCTGCGGCGCCTCCATGCA
GCTCATGAGGCACGTCAGCTTCGTCGACTGCCCTGGCCATGACATTCTCA
TGGCCACCATGCTCAACGGCGCCGCCGTCATGGACGCCGCTTTATTGCTT
ATTGCCGGTAATGAGCCCTGTCCGCAGCCGCAGACCAGCGAGCATTTGGC
CGCCGTCGAGATCATGAAGCTCAGAAACATAATCATTCTTCAAAACAAGA
TCGATCTCGTCAAGGGCACCCACGCAGAGGCTCAATCCGAACAGATTCGC
GAATTCACTCGAGGAACCGTCGCCGACGGATCCCCCATCATTCCCATCTC
GGCCCAACTCAAGTACAACATCGACGTTGTTGTCGAGTATCTCATCAAGA
AGGTGCCCGTTCCCCTCAGAGACTTCACCAGCTCTCCGAGAATGATAGTT
ATTCGAAGTTTTGATGTTAACAAACCGGGAGAGGAGGTCGACAATTTGAA
GGGCGGCGTTGCCGGTGGCTCCATCATGCAGGGCGTTCTTAAGGTTGGTG
ACGCCATTGAGGTCAGACCGGGCATCACCTTTCGCGACGCCAATGGAAAG
ATGGCCTGTAGTCCTATCATGAGTGTCATTCGCTCTATGCACGCTGAGCA
AAATGATTTGCAGTATGCGGCGCCAGGTGGACTCATCGGTGTTGGTACAA
AGATTGACCCAACTCTTACAAGGGCCGACCGTCTTGTTGGAGCTGTGCTT
GGTGCACGAGGACACTTGCCAGATGTCTATTGCGAGCTTGAGGTTAACTT
CTTTTTACTGAGACGTCTATTAGGTATGAAGACTGAAGGCGATAGTAAGC
AGGCCAAGGTTTCGAAACTTAACAAAGGTGAAATGCTTATGGTCAACATT
GGTAGTACTAGTACGGGAGGCAAAGTTCTTGCTGTCAAAAGAGATTTGGC
CAAGTTTACCCTTTCAAACCCCGTTTGCACCTCGGTGGACGAAAAGATCG
CCCTGTCCAGAAGGATTGATAAGCACTGGCGTCTCATTGGATGGGGTCGA
ATTCGTGCCGGATCAACAATCAACTTGTCCTCATCATAA
back to top