Gchil3649.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3649.t1
Unique NameGchil3649.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length148
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025222_piloncontigtig00025222_pilon:400278..400833 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705379.1
Preferred nameBET1
Max annot lvl2759|Eukaryota
KEGG koko:K08504,ko:K21412
KEGG Pathwayko04130,map04130
GOsGO:0000139,GO:0000149,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005795,GO:0005798,GO:0005801,GO:0005802,GO:0005886,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006900,GO:0006901,GO:0006903,GO:0006906,GO:0006996,GO:0008104,GO:0008150,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016482,GO:0019905,GO:0022607,GO:0030133,GO:0030134,GO:0030135,GO:0030173,GO:0031090,GO:0031201,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0032588,GO:0032879,GO:0032991,GO:0033036,GO:0033116,GO:0034613,GO:0042147,GO:0042175,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048280,GO:0048284,GO:0050789,GO:0050794,GO:0051049,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0060627,GO:0061024,GO:0061025,GO:0065003,GO:0065007,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0090114,GO:0090174,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:0098827,GO:2000156
Evalue8.7e-13
EggNOG OGsKOG3385@1|root,KOG3385@2759|Eukaryota
Descriptionprotein transport
COG categoryK
BRITEko00000,ko00001,ko03036,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3649Gchil3649Gracilaria chilensis NLEC103_M9 malegenetig00025222_pilon 400278..400833 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3649.t1Gchil3649.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025222_pilon 400278..400833 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3649.t1.start1Gchil3649.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025222_pilon 400278..400280 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3649.t1.CDS1Gchil3649.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 400278..400511 +
Gchil3649.t1.CDS2Gchil3649.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 400624..400833 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3649.t1.exon1Gchil3649.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 400278..400511 +
Gchil3649.t1.exon2Gchil3649.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 400624..400833 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3649.t1.intron1Gchil3649.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00025222_pilon 400512..400623 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3649.t1.stop1Gchil3649.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025222_pilon 400831..400833 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3649.t1 ID=Gchil3649.t1|Name=Gchil3649.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=148bp
MDGVAGDEARRRALLFGSRADAPSRRGGGARGGGGATAAAAGVAGGGASA
AVVDGELLERANTERVDTLRGQVRDVRHLAINIGHEVREQNAMLGAMHGT
FDQGASSVRRTIGQIRRLSRTGGGTHLCALALFAAVFFTLIYLLLRR*
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spliced messenger RNA

>Gchil3649.t1 ID=Gchil3649.t1|Name=Gchil3649.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=444bp|location=Sequence derived from alignment at tig00025222_pilon:400278..400833+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGGCGTGGCTGGCGATGAAGCGCGGCGGCGCGCGCTGCTGTTTGG
ATCgcgtgcggacgcgccgtcgagacgcggtggcggcgcgcgcggcggtg
gtggcgccaccgccgccgctgctggcgtggctggcggcggcgcctctgcc
gccgTTGTGGACGGCGAGCTACTGGAGCGTGCCAACACTGAACGCGTTGA
CACGCTGCGCGGCCAGGTGCGCGATGTGCGCCACCTGGCCATCAACATCG
GGCACGAAGTGCGCGAGCAAAACGCTATGCTAGGCGCCATGCACGGCACC
TTCGACCAGGGTGCGTCGTCGGTGCGACGCACCATCGGCCAAATACGTCG
TCTTTCGCGAACGGGCGGTGGCACACACTTGTGCGCCCTCGCCCTATTTG
CCGCCGTCTTCTTCACGCTCATCTACTTGCTGCTGCGCCGGTAG
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protein sequence of Gchil3649.t1

>Gchil3649.t1 ID=Gchil3649.t1|Name=Gchil3649.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=148bp
MDGVAGDEARRRALLFGSRADAPSRRGGGARGGGGATAAAAGVAGGGASA
AVVDGELLERANTERVDTLRGQVRDVRHLAINIGHEVREQNAMLGAMHGT
FDQGASSVRRTIGQIRRLSRTGGGTHLCALALFAAVFFTLIYLLLRR*
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mRNA from alignment at tig00025222_pilon:400278..400833+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3649.t1 ID=Gchil3649.t1|Name=Gchil3649.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=556bp|location=Sequence derived from alignment at tig00025222_pilon:400278..400833+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACGGCGTGGCTGGCGATGAAGCGCGGCGGCGCGCGCTGCTGTTTGG
ATCgcgtgcggacgcgccgtcgagacgcggtggcggcgcgcgcggcggtg
gtggcgccaccgccgccgctgctggcgtggctggcggcggcgcctctgcc
gccgTTGTGGACGGCGAGCTACTGGAGCGTGCCAACACTGAACGCGTTGA
CACGCTGCGCGGCCAGGTGCGCGATGTGCGCCACGTACGTCATGAGCATC
CCCCCCTCCCGCGGCCTCTTCGTCGCGGCCTCTTCGTCGCGCCCGACTGA
CAGCCCGCTCTTCCTCCCTCCTTTCGCGCGCGTCACCCCGTCGCAGCTGG
CCATCAACATCGGGCACGAAGTGCGCGAGCAAAACGCTATGCTAGGCGCC
ATGCACGGCACCTTCGACCAGGGTGCGTCGTCGGTGCGACGCACCATCGG
CCAAATACGTCGTCTTTCGCGAACGGGCGGTGGCACACACTTGTGCGCCC
TCGCCCTATTTGCCGCCGTCTTCTTCACGCTCATCTACTTGCTGCTGCGC
CGGTAG
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Coding sequence (CDS) from alignment at tig00025222_pilon:400278..400833+

>Gchil3649.t1 ID=Gchil3649.t1|Name=Gchil3649.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=444bp|location=Sequence derived from alignment at tig00025222_pilon:400278..400833+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACGGCGTGGCTGGCGATGAAGCGCGGCGGCGCGCGCTGCTGTTTGG
ATCgcgtgcggacgcgccgtcgagacgcggtggcggcgcgcgcggcggtg
gtggcgccaccgccgccgctgctggcgtggctggcggcggcgcctctgcc
gccgTTGTGGACGGCGAGCTACTGGAGCGTGCCAACACTGAACGCGTTGA
CACGCTGCGCGGCCAGGTGCGCGATGTGCGCCACCTGGCCATCAACATCG
GGCACGAAGTGCGCGAGCAAAACGCTATGCTAGGCGCCATGCACGGCACC
TTCGACCAGGGTGCGTCGTCGGTGCGACGCACCATCGGCCAAATACGTCG
TCTTTCGCGAACGGGCGGTGGCACACACTTGTGCGCCCTCGCCCTATTTG
CCGCCGTCTTCTTCACGCTCATCTACTTGCTGCTGCGCCGGTAG
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