Gchil3644.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3644.t1
Unique NameGchil3644.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length195
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025222_piloncontigtig00025222_pilon:387149..387733 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CML255CT
Preferred nameAUR1
PFAMsPAP2_3
Max annot lvl2759|Eukaryota
GOsGO:0000139,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0006629,GO:0006643,GO:0006644,GO:0006665,GO:0006673,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016758,GO:0019637,GO:0030148,GO:0030173,GO:0031090,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031984,GO:0032991,GO:0035690,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045140,GO:0046467,GO:0050896,GO:0051716,GO:0070887,GO:0070916,GO:0071704,GO:0098588,GO:0098791,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990234
Evalue2.47e-34
EggNOG OGs28HC7@1|root,2QPQM@2759|Eukaryota
Descriptioninositol phosphoceramide synthase activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3644Gchil3644Gracilaria chilensis NLEC103_M9 malegenetig00025222_pilon 387149..387733 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3644.t1.stop1Gchil3644.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025222_pilon 387149..387151 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3644.t1.CDS1Gchil3644.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 387149..387733 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3644.t1.exon1Gchil3644.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 387149..387733 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3644.t1.start1Gchil3644.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025222_pilon 387731..387733 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3644.t1Gchil3644.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025222_pilon 387149..387733 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3644.t1 ID=Gchil3644.t1|Name=Gchil3644.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=195bp
MFPTAPPWYFLKHGVRAANYSMKGDPAVLARVDERLSMNLFHNMYAKGGK
VVFGAWPSLHAAWPYLIARFPVGYGRASSRGRVASTLIWMYVGLVWWAAI
YLRHHYAADLLGGALFAELSLAASLMVERRVRARKVFGNGEGHLRAQNDD
DNADDDDDDDDDDFDEECLVADADGYNERKRWPRSVQLPMMAPC*
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spliced messenger RNA

>Gchil3644.t1 ID=Gchil3644.t1|Name=Gchil3644.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=585bp|location=Sequence derived from alignment at tig00025222_pilon:387149..387733- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTCCCACGGCACCGCCGTGGTACTTTCTCAAGCACGGAGTGCGCGC
GGCCAATTACTCCATGAAGGGAGATCCAGCCGTGCTGGCGCGCGTGGACG
AGCGTTTGAGCATGAATCTGTTTCATAACATGTACGCCAAGGGGGGGAAG
GTGGTGTTTGGCGCATGGCCTTCGCTACATGCAGCGTGGCCCTACCTGAT
TGCGCGCTTCCCCGTGGGATATGGGCGCGCATCGTCGCGAGGACGCGTGG
CGTCGACGCTGATTTGGATGTACGTGGGGCTGGTGTGGTGGGCAGCCATC
TATCTGCGTCACCACTACGCAGCCGATCTGCTGGGCGGCGCGCTGTTCGC
CGAGCTGTCGCTGGCGGCATCGCTCATGGTGGAACGTCGCGTACGCGCGC
GCAAAGTTTTCGGTAACGGCGAAGGCCATCTGCGCGCTCAAAACGACGAC
GACAACGCCGACGACGACGACGACGACGACGACGACGACTTTGACGAGGA
GTGTCTGGTGGCCGACGCCGACGGCTACAACGAGCGCAAGCGGTGGCCCC
GCAGTGTGCAGCTGCCCATGATGGCTCCGTGCTAG
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protein sequence of Gchil3644.t1

>Gchil3644.t1 ID=Gchil3644.t1|Name=Gchil3644.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=195bp
MFPTAPPWYFLKHGVRAANYSMKGDPAVLARVDERLSMNLFHNMYAKGGK
VVFGAWPSLHAAWPYLIARFPVGYGRASSRGRVASTLIWMYVGLVWWAAI
YLRHHYAADLLGGALFAELSLAASLMVERRVRARKVFGNGEGHLRAQNDD
DNADDDDDDDDDDFDEECLVADADGYNERKRWPRSVQLPMMAPC*
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mRNA from alignment at tig00025222_pilon:387149..387733-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3644.t1 ID=Gchil3644.t1|Name=Gchil3644.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=585bp|location=Sequence derived from alignment at tig00025222_pilon:387149..387733- (Gracilaria chilensis NLEC103_M9 male)
ATGTTTCCCACGGCACCGCCGTGGTACTTTCTCAAGCACGGAGTGCGCGC
GGCCAATTACTCCATGAAGGGAGATCCAGCCGTGCTGGCGCGCGTGGACG
AGCGTTTGAGCATGAATCTGTTTCATAACATGTACGCCAAGGGGGGGAAG
GTGGTGTTTGGCGCATGGCCTTCGCTACATGCAGCGTGGCCCTACCTGAT
TGCGCGCTTCCCCGTGGGATATGGGCGCGCATCGTCGCGAGGACGCGTGG
CGTCGACGCTGATTTGGATGTACGTGGGGCTGGTGTGGTGGGCAGCCATC
TATCTGCGTCACCACTACGCAGCCGATCTGCTGGGCGGCGCGCTGTTCGC
CGAGCTGTCGCTGGCGGCATCGCTCATGGTGGAACGTCGCGTACGCGCGC
GCAAAGTTTTCGGTAACGGCGAAGGCCATCTGCGCGCTCAAAACGACGAC
GACAACGCCGACGACGACGACGACGACGACGACGACGACTTTGACGAGGA
GTGTCTGGTGGCCGACGCCGACGGCTACAACGAGCGCAAGCGGTGGCCCC
GCAGTGTGCAGCTGCCCATGATGGCTCCGTGCTAG
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Coding sequence (CDS) from alignment at tig00025222_pilon:387149..387733-

>Gchil3644.t1 ID=Gchil3644.t1|Name=Gchil3644.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=585bp|location=Sequence derived from alignment at tig00025222_pilon:387149..387733- (Gracilaria chilensis NLEC103_M9 male)
ATGTTTCCCACGGCACCGCCGTGGTACTTTCTCAAGCACGGAGTGCGCGC
GGCCAATTACTCCATGAAGGGAGATCCAGCCGTGCTGGCGCGCGTGGACG
AGCGTTTGAGCATGAATCTGTTTCATAACATGTACGCCAAGGGGGGGAAG
GTGGTGTTTGGCGCATGGCCTTCGCTACATGCAGCGTGGCCCTACCTGAT
TGCGCGCTTCCCCGTGGGATATGGGCGCGCATCGTCGCGAGGACGCGTGG
CGTCGACGCTGATTTGGATGTACGTGGGGCTGGTGTGGTGGGCAGCCATC
TATCTGCGTCACCACTACGCAGCCGATCTGCTGGGCGGCGCGCTGTTCGC
CGAGCTGTCGCTGGCGGCATCGCTCATGGTGGAACGTCGCGTACGCGCGC
GCAAAGTTTTCGGTAACGGCGAAGGCCATCTGCGCGCTCAAAACGACGAC
GACAACGCCGACGACGACGACGACGACGACGACGACGACTTTGACGAGGA
GTGTCTGGTGGCCGACGCCGACGGCTACAACGAGCGCAAGCGGTGGCCCC
GCAGTGTGCAGCTGCCCATGATGGCTCCGTGCTAG
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