Gchil3643.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3643.t1
Unique NameGchil3643.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length80
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025222_piloncontigtig00025222_pilon:386660..386899 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog39416.CAZ86555
Preferred nameQCR9
PFAMsUCR_UQCRX_QCR9
Max annot lvl4751|Fungi
KEGG koko:K00419
KEGG Pathwayko00190,ko01100,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00152
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005750,GO:0006091,GO:0006119,GO:0006122,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016020,GO:0016021,GO:0016043,GO:0016310,GO:0017004,GO:0017062,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0022607,GO:0022900,GO:0022904,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0033108,GO:0034551,GO:0034622,GO:0034641,GO:0042773,GO:0042775,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045275,GO:0045333,GO:0046034,GO:0046483,GO:0055086,GO:0055114,GO:0065003,GO:0070069,GO:0070469,GO:0071704,GO:0071840,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
Evalue1.08e-07
EggNOG OGsKOG3494@1|root,KOG3494@2759|Eukaryota,3A9F6@33154|Opisthokonta,3P6WI@4751|Fungi,3QYGK@4890|Ascomycota
DescriptionUbiquinol-cytochrome C reductase
COG categoryS
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3643Gchil3643Gracilaria chilensis NLEC103_M9 malegenetig00025222_pilon 386660..386899 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3643.t1.stop1Gchil3643.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025222_pilon 386660..386662 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3643.t1.CDS1Gchil3643.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 386660..386899 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3643.t1.exon1Gchil3643.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 386660..386899 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3643.t1.start1Gchil3643.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025222_pilon 386897..386899 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3643.t1Gchil3643.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025222_pilon 386660..386899 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3643.t1 ID=Gchil3643.t1|Name=Gchil3643.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=80bp
MAAREAATSGMAALRATVYNVLMRRNSVYVTALLAGGYVSTHLYFGATDS
LWASLNRGKSWPEVCAALPPRADDDDDDD*
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spliced messenger RNA

>Gchil3643.t1 ID=Gchil3643.t1|Name=Gchil3643.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=240bp|location=Sequence derived from alignment at tig00025222_pilon:386660..386899- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGCGCGAGAGGCGGCGACGAGCGGCATGGCGGCGCTGCGCGCCAC
GGTGTACAATGTGCTGATGAGACGCAACTCGGTGTACGTGACGGCGCTGT
TGGCCGGAGGGTACGTCTCCACGCACCTCTACTTTGGTGCCACCGACTCG
CTGTGGGCGTCGCTCAACCGCGGCAAGTCGTGGCCGGAGGTGTGCGCCGC
GCTGCCGCCGCGCGCCGACGATGACGACGATGACGACTGA
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protein sequence of Gchil3643.t1

>Gchil3643.t1 ID=Gchil3643.t1|Name=Gchil3643.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=80bp
MAAREAATSGMAALRATVYNVLMRRNSVYVTALLAGGYVSTHLYFGATDS
LWASLNRGKSWPEVCAALPPRADDDDDDD*
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mRNA from alignment at tig00025222_pilon:386660..386899-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3643.t1 ID=Gchil3643.t1|Name=Gchil3643.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=240bp|location=Sequence derived from alignment at tig00025222_pilon:386660..386899- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGGCGCGAGAGGCGGCGACGAGCGGCATGGCGGCGCTGCGCGCCAC
GGTGTACAATGTGCTGATGAGACGCAACTCGGTGTACGTGACGGCGCTGT
TGGCCGGAGGGTACGTCTCCACGCACCTCTACTTTGGTGCCACCGACTCG
CTGTGGGCGTCGCTCAACCGCGGCAAGTCGTGGCCGGAGGTGTGCGCCGC
GCTGCCGCCGCGCGCCGACGATGACGACGATGACGACTGA
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Coding sequence (CDS) from alignment at tig00025222_pilon:386660..386899-

>Gchil3643.t1 ID=Gchil3643.t1|Name=Gchil3643.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=240bp|location=Sequence derived from alignment at tig00025222_pilon:386660..386899- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGGCGCGAGAGGCGGCGACGAGCGGCATGGCGGCGCTGCGCGCCAC
GGTGTACAATGTGCTGATGAGACGCAACTCGGTGTACGTGACGGCGCTGT
TGGCCGGAGGGTACGTCTCCACGCACCTCTACTTTGGTGCCACCGACTCG
CTGTGGGCGTCGCTCAACCGCGGCAAGTCGTGGCCGGAGGTGTGCGCCGC
GCTGCCGCCGCGCGCCGACGATGACGACGATGACGACTGA
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