Gchil364.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil364.t1
Unique Name	Gchil364.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	313

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000212_pilon	contig	tig00000212_pilon:627438..628376 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	70448.A0A090N2R6
PFAMs	Mito_carr
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K15111
KEGG TC	2.A.29.18
Evalue	1.79e-25
EggNOG OGs	KOG0768@1\|root,KOG0768@2759\|Eukaryota,37KH0@33090\|Viridiplantae,34JR1@3041\|Chlorophyta
Description	Belongs to the mitochondrial carrier (TC 2.A.29) family
COG category	C
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil364	Gchil364	Gracilaria chilensis NLEC103_M9 male	gene	tig00000212_pilon 627438..628376 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil364.t1.start1	Gchil364.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000212_pilon 627438..627440 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil364.t1.CDS1	Gchil364.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000212_pilon 627438..628376 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil364.t1.exon1	Gchil364.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000212_pilon 627438..628376 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil364.t1.stop1	Gchil364.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000212_pilon 628374..628376 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil364.t1	Gchil364.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000212_pilon 627438..628376 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000212_pilon:627438..628376+
coding sequence from alignment at tig00000212_pilon:627438..628376+

mRNA sequence

>Gchil364.t1 ID=Gchil364.t1|Name=Gchil364.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=313bp
MRDARCARRRRSAAAAVVVATTAAVDVRSTCVVSQAARAAVAGALAECGV
LLALYPLDTLRTRLHVTTKAQCGKLFAGLGAGLPGCFADAAVFSFVFAAL
RGCAPNCDDSGNGDHDVVASSVHVDKPVRRGARAAIAAGVAALASTVVET
PFLVARDRVRLGHAPHALAAWHTALRARGVRGLYTGAMESFTRDAPLEMA
QFGTFELLRCAMARAQGKKHLNGGETMAVALVSGAMVGAALAPLDVVVTR
VVASPARYCGVVRTARALVREEGVGVLFRGARFKVLREALSSALFFPLFE
HMVATWPSSTQL*

spliced messenger RNA

>Gchil364.t1 ID=Gchil364.t1|Name=Gchil364.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=939bp|location=Sequence derived from alignment at tig00000212_pilon:627438..628376+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGACGCCCGATgcgcgcggcggcggaggagcgcggcggcagcggt
ggtggtggcCACAACCGCCGCAGTTGATGTGCGCAGCACATGCGTGGTGA
GCCAAGCCGCGAGGGCGGCTGTGGCGGGCGCTTTGGCCGAGTGCGGCGTG
CTGCTAGCGCTCTATCCGCTGGATACATTGAGGACGAGATTGCATGTGAC
CACCAAGGCGCAGTGCGGCAAGCTGTTTGCCGGTCTGGGCGCTGGTCTGC
CAGGCTGTTTCGCGGACGCCGCCGTGTTTTCCTTTGTGTTTGCTGCGCTT
CGCGGCTGCGCACCCAATTGTGATGATAGTGGCAATGGCGATCACGACGT
TGTGGCATCGAGTGTGCACGTGGACAAACCGGTGCGACGGGGCGCACGCG
CCGCCATAGCAGCTGGAGTGGCCGCGCTGGCGTCCACCGTGGTGGAAACA
CCCTTTCTGGTTGCGCGCGATCGCGTTCGTCTCGGACACGCGCCACACGC
GCTAGCAGCCTGGCACACAGCGCTTCGCGCACGCGGCGTACGCGGTTTGT
ACACTGGAGCAATGGAATCATTTACACGCGACGCGCCTCTAGAAATGGCG
CAGTTTGGTACGTTTGAGTTGTTACGCTGCGCTATGGCGCGAGCACAGGG
GAAAAAGCATCTGAATGGCGGCGAGACAATGGCGGTGGCGCTTGTGTCTG
GGGCGATGGTCGGTGCCGCTTTGGCGCCTCTTGATGTGGTTGTCACGCGC
GTGGTGGCCTCACCGGCTCGTTACTGCGGCGTGGTGCGTACGGCGCGCGC
GCTGGTTCGCGAGGAAGGCGTTGGGGTATTGTTTCGAGGCGCGCGCTTCA
AAGTGTTGCGGGAGGCCTTGTCCAGCGCGCTGTTCTTCCCGCTTTTCGAG
CACATGGTGGCGACATGGCCGTCGTCAACGCAGTTATGA

protein sequence of Gchil364.t1

>Gchil364.t1 ID=Gchil364.t1|Name=Gchil364.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=313bp
MRDARCARRRRSAAAAVVVATTAAVDVRSTCVVSQAARAAVAGALAECGV
LLALYPLDTLRTRLHVTTKAQCGKLFAGLGAGLPGCFADAAVFSFVFAAL
RGCAPNCDDSGNGDHDVVASSVHVDKPVRRGARAAIAAGVAALASTVVET
PFLVARDRVRLGHAPHALAAWHTALRARGVRGLYTGAMESFTRDAPLEMA
QFGTFELLRCAMARAQGKKHLNGGETMAVALVSGAMVGAALAPLDVVVTR
VVASPARYCGVVRTARALVREEGVGVLFRGARFKVLREALSSALFFPLFE
HMVATWPSSTQL*

mRNA from alignment at tig00000212_pilon:627438..628376+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil364.t1 ID=Gchil364.t1|Name=Gchil364.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=939bp|location=Sequence derived from alignment at tig00000212_pilon:627438..628376+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGCGACGCCCGATgcgcgcggcggcggaggagcgcggcggcagcggt
ggtggtggcCACAACCGCCGCAGTTGATGTGCGCAGCACATGCGTGGTGA
GCCAAGCCGCGAGGGCGGCTGTGGCGGGCGCTTTGGCCGAGTGCGGCGTG
CTGCTAGCGCTCTATCCGCTGGATACATTGAGGACGAGATTGCATGTGAC
CACCAAGGCGCAGTGCGGCAAGCTGTTTGCCGGTCTGGGCGCTGGTCTGC
CAGGCTGTTTCGCGGACGCCGCCGTGTTTTCCTTTGTGTTTGCTGCGCTT
CGCGGCTGCGCACCCAATTGTGATGATAGTGGCAATGGCGATCACGACGT
TGTGGCATCGAGTGTGCACGTGGACAAACCGGTGCGACGGGGCGCACGCG
CCGCCATAGCAGCTGGAGTGGCCGCGCTGGCGTCCACCGTGGTGGAAACA
CCCTTTCTGGTTGCGCGCGATCGCGTTCGTCTCGGACACGCGCCACACGC
GCTAGCAGCCTGGCACACAGCGCTTCGCGCACGCGGCGTACGCGGTTTGT
ACACTGGAGCAATGGAATCATTTACACGCGACGCGCCTCTAGAAATGGCG
CAGTTTGGTACGTTTGAGTTGTTACGCTGCGCTATGGCGCGAGCACAGGG
GAAAAAGCATCTGAATGGCGGCGAGACAATGGCGGTGGCGCTTGTGTCTG
GGGCGATGGTCGGTGCCGCTTTGGCGCCTCTTGATGTGGTTGTCACGCGC
GTGGTGGCCTCACCGGCTCGTTACTGCGGCGTGGTGCGTACGGCGCGCGC
GCTGGTTCGCGAGGAAGGCGTTGGGGTATTGTTTCGAGGCGCGCGCTTCA
AAGTGTTGCGGGAGGCCTTGTCCAGCGCGCTGTTCTTCCCGCTTTTCGAG
CACATGGTGGCGACATGGCCGTCGTCAACGCAGTTATGA

Coding sequence (CDS) from alignment at tig00000212_pilon:627438..628376+

>Gchil364.t1 ID=Gchil364.t1|Name=Gchil364.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=939bp|location=Sequence derived from alignment at tig00000212_pilon:627438..628376+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGCGACGCCCGATgcgcgcggcggcggaggagcgcggcggcagcggt
ggtggtggcCACAACCGCCGCAGTTGATGTGCGCAGCACATGCGTGGTGA
GCCAAGCCGCGAGGGCGGCTGTGGCGGGCGCTTTGGCCGAGTGCGGCGTG
CTGCTAGCGCTCTATCCGCTGGATACATTGAGGACGAGATTGCATGTGAC
CACCAAGGCGCAGTGCGGCAAGCTGTTTGCCGGTCTGGGCGCTGGTCTGC
CAGGCTGTTTCGCGGACGCCGCCGTGTTTTCCTTTGTGTTTGCTGCGCTT
CGCGGCTGCGCACCCAATTGTGATGATAGTGGCAATGGCGATCACGACGT
TGTGGCATCGAGTGTGCACGTGGACAAACCGGTGCGACGGGGCGCACGCG
CCGCCATAGCAGCTGGAGTGGCCGCGCTGGCGTCCACCGTGGTGGAAACA
CCCTTTCTGGTTGCGCGCGATCGCGTTCGTCTCGGACACGCGCCACACGC
GCTAGCAGCCTGGCACACAGCGCTTCGCGCACGCGGCGTACGCGGTTTGT
ACACTGGAGCAATGGAATCATTTACACGCGACGCGCCTCTAGAAATGGCG
CAGTTTGGTACGTTTGAGTTGTTACGCTGCGCTATGGCGCGAGCACAGGG
GAAAAAGCATCTGAATGGCGGCGAGACAATGGCGGTGGCGCTTGTGTCTG
GGGCGATGGTCGGTGCCGCTTTGGCGCCTCTTGATGTGGTTGTCACGCGC
GTGGTGGCCTCACCGGCTCGTTACTGCGGCGTGGTGCGTACGGCGCGCGC
GCTGGTTCGCGAGGAAGGCGTTGGGGTATTGTTTCGAGGCGCGCGCTTCA
AAGTGTTGCGGGAGGCCTTGTCCAGCGCGCTGTTCTTCCCGCTTTTCGAG
CACATGGTGGCGACATGGCCGTCGTCAACGCAGTTATGA