Gchil3633.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3633.t1
Unique NameGchil3633.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length566
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025222_piloncontigtig00025222_pilon:360014..361711 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D8LC91
PFAMsGTP_EFTU,GTP_EFTU_D2,RF3_C
Max annot lvl2759|Eukaryota
Evalue2.1e-229
EggNOG OGsCOG0480@1|root,KOG0465@2759|Eukaryota
Descriptiontranslation elongation factor activity
COG categoryJ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3633Gchil3633Gracilaria chilensis NLEC103_M9 malegenetig00025222_pilon 360014..361711 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3633.t1.stop1Gchil3633.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025222_pilon 360014..360016 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3633.t1.CDS1Gchil3633.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 360014..361711 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3633.t1.exon1Gchil3633.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 360014..361711 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3633.t1.start1Gchil3633.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025222_pilon 361709..361711 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3633.t1Gchil3633.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025222_pilon 360014..361711 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3633.t1 ID=Gchil3633.t1|Name=Gchil3633.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=566bp
MAALLFLGATPLRIPPPHKRRTALLCATAAPVATDIALEVARRRNLAIIS
HPDAGKSTLTEKLLLYGGAIQQAGAVRSRRAQRGVVSDSMAMEQERGISI
TSAVMTFEFQGKRINITDCPGHADFSEDTYRTLAAVDNAIMLIDGAKGLE
PQTRKLFEICRMRTLPTFTFVNKMDRPAMSPFEIADQIEREFDLLTYPVV
WPIGDGDRFHGVFERSTRTVHIYERAQRGKKALSTTLSLDDPSLKTHIGN
QLYDQLLEDAEILDEMGNEWDYEAVLNGDLTPMFFGSAMSNFGVELFLRS
FLEMGRCPPSKESSTGLVTPDGEHFTGQVFKLQANMDARHRDRLAFIRIF
SGKFEKGMKVNNARHGKTVALTRPQGLFAAERYTVDTAFAGDVIGLNNPG
VFAIGDTVYTGGKVSFPGIPSFSPELFAYLQNPNPSAYKNFRKGLNQLLE
EGAVQLLRAREDEGNEDPILAAVGQLQFEVVQRRLKDEYNVDSRLDPMPY
TVARWVVGPGDPWEVVDSCGRLFGVFCAKDQWGRPVLLFKNDWGLNNLLA
DHDVELKPWAFAPEE*
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spliced messenger RNA

>Gchil3633.t1 ID=Gchil3633.t1|Name=Gchil3633.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1698bp|location=Sequence derived from alignment at tig00025222_pilon:360014..361711- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGCTCTCCTCTTCTTGGGCGCTACACCGCTTCGCATTCCCCCCCC
CCACAAACGTCGTACAGCTCTCCTTTGCGCAACCGCCGCTCCCGTCGCCA
CCGACATCGCGCTTGAGGTCGCCCGCCGTCGTAATCTCGCCATAATCTCC
CACCCAGATGCAGGCAAGTCCACTCTCACCGAGAAGCTCCTGCTCTATGG
CGGCGCCATCCAACAGGCTGGCGCAGTCCGCAGTCGAAGAGCGCAAAGAG
GTGTCGTGTCAGATAGCATGGCCATGGAACAGGAGCGCGGTATCTCCATC
ACCTCCGCCGTCATGACTTTCGAATTTCAGGGTAAGCGTATCAACATTAC
CGACTGTCCTGGACATGCCGACTTTTCGGAAGACACTTACAGAACTCTGG
CCGCTGTCGACAATGCTATCATGCTCATCGATGGCGCTAAGGGTCTCGAA
CCCCAGACTCGCAAGCTATTTGAGATCTGTCGAATGCGCACCTTGCCTAC
GTTTACATTCGTCAACAAAATGGACCGTCCCGCCATGAGTCCCTTTGAAA
TAGCCGACCAGATCGAGCGCGAGTTTGATTTGCTTACCTACCCGGTCGTC
TGGCCCATCGGCGATGGAGATCGCTTTCATGGCGTCTTCGAGCGTTCTAC
GCGTACGGTTCATATATACGAGCGCGCTCAACGCGGGAAGAAAGCTCTTT
CCACCACGCTCTCTTTAGACGACCCCTCGCTCAAAACGCATATTGGCAAC
CAGCTGTACGACCAACTTCTGGAAGACGCTGAGATTCTCGACGAAATGGG
CAACGAATGGGACTACGAGGCCGTGCTCAATGGAGACCTCACACCCATGT
TTTTCGGTTCTGCCATGTCCAATTTCGGAGTGGAGTTGTTCCTCCGTTCG
TTCCTTGAGATGGGACGCTGCCCCCCTTCCAAGGAGAGCTCTACAGGGCT
TGTCACTCCAGATGGTGAGCATTTCACAGGGCAGGTTTTCAAACTACAAG
CCAACATGGATGCTAGACACCGAGATCGCCTTGCGTTCATACGCATTTTC
AGCGGCAAGTTTGAGAAGGGAATGAAGGTTAACAATGCAAGACATGGAAA
AACAGTTGCGCTCACCAGACCGCAGGGTTTATTCGCGGCAGAGCGATACA
CAGTTGACACAGCGTTTGCTGGCGATGTCATTGGCCTCAATAATCCGGGC
GTGTTTGCTATTGGCGATACGGTTTATACCGGTGGAAAGGTTAGCTTCCC
AGGGATTCCAAGCTTCAGCCCAGAGTTATTTGCGTATCTCCAAAACCCGA
ATCCATCCGCTTACAAGAACTTTCGCAAGGGCTTAAACCAATTATTGGAA
GAGGGTGCTGTGCAACTGCTGCGGGCGAGGGAGGATGAGGGGAATGAAGA
TCCTATACTTGCAGCTGTTGGGCAGCTGCAATTTGAAGTTGTGCAACGGC
GGCTTAAAGATGAGTACAATGTCGACAGCCGCTTAGATCCCATGCCGTAC
ACCGTAGCTAGATGGGTAGTGGGTCCTGGAGACCCTTGGGAGGTGGTTGA
TAGCTGCGGTAGGCTGTTTGGCGTTTTCTGCGCAAAAGATCAGTGGGGGC
GGCCTGTTCTTCTATTCAAGAATGATTGGGGTCTAAACAACCTGCTTGCC
GATCACGATGTAGAGCTGAAACCTTGGGCTTTTGCACCGGAGGAATAA
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protein sequence of Gchil3633.t1

>Gchil3633.t1 ID=Gchil3633.t1|Name=Gchil3633.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=566bp
MAALLFLGATPLRIPPPHKRRTALLCATAAPVATDIALEVARRRNLAIIS
HPDAGKSTLTEKLLLYGGAIQQAGAVRSRRAQRGVVSDSMAMEQERGISI
TSAVMTFEFQGKRINITDCPGHADFSEDTYRTLAAVDNAIMLIDGAKGLE
PQTRKLFEICRMRTLPTFTFVNKMDRPAMSPFEIADQIEREFDLLTYPVV
WPIGDGDRFHGVFERSTRTVHIYERAQRGKKALSTTLSLDDPSLKTHIGN
QLYDQLLEDAEILDEMGNEWDYEAVLNGDLTPMFFGSAMSNFGVELFLRS
FLEMGRCPPSKESSTGLVTPDGEHFTGQVFKLQANMDARHRDRLAFIRIF
SGKFEKGMKVNNARHGKTVALTRPQGLFAAERYTVDTAFAGDVIGLNNPG
VFAIGDTVYTGGKVSFPGIPSFSPELFAYLQNPNPSAYKNFRKGLNQLLE
EGAVQLLRAREDEGNEDPILAAVGQLQFEVVQRRLKDEYNVDSRLDPMPY
TVARWVVGPGDPWEVVDSCGRLFGVFCAKDQWGRPVLLFKNDWGLNNLLA
DHDVELKPWAFAPEE*
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mRNA from alignment at tig00025222_pilon:360014..361711-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3633.t1 ID=Gchil3633.t1|Name=Gchil3633.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1698bp|location=Sequence derived from alignment at tig00025222_pilon:360014..361711- (Gracilaria chilensis NLEC103_M9 male)
ATGGCAGCTCTCCTCTTCTTGGGCGCTACACCGCTTCGCATTCCCCCCCC
CCACAAACGTCGTACAGCTCTCCTTTGCGCAACCGCCGCTCCCGTCGCCA
CCGACATCGCGCTTGAGGTCGCCCGCCGTCGTAATCTCGCCATAATCTCC
CACCCAGATGCAGGCAAGTCCACTCTCACCGAGAAGCTCCTGCTCTATGG
CGGCGCCATCCAACAGGCTGGCGCAGTCCGCAGTCGAAGAGCGCAAAGAG
GTGTCGTGTCAGATAGCATGGCCATGGAACAGGAGCGCGGTATCTCCATC
ACCTCCGCCGTCATGACTTTCGAATTTCAGGGTAAGCGTATCAACATTAC
CGACTGTCCTGGACATGCCGACTTTTCGGAAGACACTTACAGAACTCTGG
CCGCTGTCGACAATGCTATCATGCTCATCGATGGCGCTAAGGGTCTCGAA
CCCCAGACTCGCAAGCTATTTGAGATCTGTCGAATGCGCACCTTGCCTAC
GTTTACATTCGTCAACAAAATGGACCGTCCCGCCATGAGTCCCTTTGAAA
TAGCCGACCAGATCGAGCGCGAGTTTGATTTGCTTACCTACCCGGTCGTC
TGGCCCATCGGCGATGGAGATCGCTTTCATGGCGTCTTCGAGCGTTCTAC
GCGTACGGTTCATATATACGAGCGCGCTCAACGCGGGAAGAAAGCTCTTT
CCACCACGCTCTCTTTAGACGACCCCTCGCTCAAAACGCATATTGGCAAC
CAGCTGTACGACCAACTTCTGGAAGACGCTGAGATTCTCGACGAAATGGG
CAACGAATGGGACTACGAGGCCGTGCTCAATGGAGACCTCACACCCATGT
TTTTCGGTTCTGCCATGTCCAATTTCGGAGTGGAGTTGTTCCTCCGTTCG
TTCCTTGAGATGGGACGCTGCCCCCCTTCCAAGGAGAGCTCTACAGGGCT
TGTCACTCCAGATGGTGAGCATTTCACAGGGCAGGTTTTCAAACTACAAG
CCAACATGGATGCTAGACACCGAGATCGCCTTGCGTTCATACGCATTTTC
AGCGGCAAGTTTGAGAAGGGAATGAAGGTTAACAATGCAAGACATGGAAA
AACAGTTGCGCTCACCAGACCGCAGGGTTTATTCGCGGCAGAGCGATACA
CAGTTGACACAGCGTTTGCTGGCGATGTCATTGGCCTCAATAATCCGGGC
GTGTTTGCTATTGGCGATACGGTTTATACCGGTGGAAAGGTTAGCTTCCC
AGGGATTCCAAGCTTCAGCCCAGAGTTATTTGCGTATCTCCAAAACCCGA
ATCCATCCGCTTACAAGAACTTTCGCAAGGGCTTAAACCAATTATTGGAA
GAGGGTGCTGTGCAACTGCTGCGGGCGAGGGAGGATGAGGGGAATGAAGA
TCCTATACTTGCAGCTGTTGGGCAGCTGCAATTTGAAGTTGTGCAACGGC
GGCTTAAAGATGAGTACAATGTCGACAGCCGCTTAGATCCCATGCCGTAC
ACCGTAGCTAGATGGGTAGTGGGTCCTGGAGACCCTTGGGAGGTGGTTGA
TAGCTGCGGTAGGCTGTTTGGCGTTTTCTGCGCAAAAGATCAGTGGGGGC
GGCCTGTTCTTCTATTCAAGAATGATTGGGGTCTAAACAACCTGCTTGCC
GATCACGATGTAGAGCTGAAACCTTGGGCTTTTGCACCGGAGGAATAA
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Coding sequence (CDS) from alignment at tig00025222_pilon:360014..361711-

>Gchil3633.t1 ID=Gchil3633.t1|Name=Gchil3633.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1698bp|location=Sequence derived from alignment at tig00025222_pilon:360014..361711- (Gracilaria chilensis NLEC103_M9 male)
ATGGCAGCTCTCCTCTTCTTGGGCGCTACACCGCTTCGCATTCCCCCCCC
CCACAAACGTCGTACAGCTCTCCTTTGCGCAACCGCCGCTCCCGTCGCCA
CCGACATCGCGCTTGAGGTCGCCCGCCGTCGTAATCTCGCCATAATCTCC
CACCCAGATGCAGGCAAGTCCACTCTCACCGAGAAGCTCCTGCTCTATGG
CGGCGCCATCCAACAGGCTGGCGCAGTCCGCAGTCGAAGAGCGCAAAGAG
GTGTCGTGTCAGATAGCATGGCCATGGAACAGGAGCGCGGTATCTCCATC
ACCTCCGCCGTCATGACTTTCGAATTTCAGGGTAAGCGTATCAACATTAC
CGACTGTCCTGGACATGCCGACTTTTCGGAAGACACTTACAGAACTCTGG
CCGCTGTCGACAATGCTATCATGCTCATCGATGGCGCTAAGGGTCTCGAA
CCCCAGACTCGCAAGCTATTTGAGATCTGTCGAATGCGCACCTTGCCTAC
GTTTACATTCGTCAACAAAATGGACCGTCCCGCCATGAGTCCCTTTGAAA
TAGCCGACCAGATCGAGCGCGAGTTTGATTTGCTTACCTACCCGGTCGTC
TGGCCCATCGGCGATGGAGATCGCTTTCATGGCGTCTTCGAGCGTTCTAC
GCGTACGGTTCATATATACGAGCGCGCTCAACGCGGGAAGAAAGCTCTTT
CCACCACGCTCTCTTTAGACGACCCCTCGCTCAAAACGCATATTGGCAAC
CAGCTGTACGACCAACTTCTGGAAGACGCTGAGATTCTCGACGAAATGGG
CAACGAATGGGACTACGAGGCCGTGCTCAATGGAGACCTCACACCCATGT
TTTTCGGTTCTGCCATGTCCAATTTCGGAGTGGAGTTGTTCCTCCGTTCG
TTCCTTGAGATGGGACGCTGCCCCCCTTCCAAGGAGAGCTCTACAGGGCT
TGTCACTCCAGATGGTGAGCATTTCACAGGGCAGGTTTTCAAACTACAAG
CCAACATGGATGCTAGACACCGAGATCGCCTTGCGTTCATACGCATTTTC
AGCGGCAAGTTTGAGAAGGGAATGAAGGTTAACAATGCAAGACATGGAAA
AACAGTTGCGCTCACCAGACCGCAGGGTTTATTCGCGGCAGAGCGATACA
CAGTTGACACAGCGTTTGCTGGCGATGTCATTGGCCTCAATAATCCGGGC
GTGTTTGCTATTGGCGATACGGTTTATACCGGTGGAAAGGTTAGCTTCCC
AGGGATTCCAAGCTTCAGCCCAGAGTTATTTGCGTATCTCCAAAACCCGA
ATCCATCCGCTTACAAGAACTTTCGCAAGGGCTTAAACCAATTATTGGAA
GAGGGTGCTGTGCAACTGCTGCGGGCGAGGGAGGATGAGGGGAATGAAGA
TCCTATACTTGCAGCTGTTGGGCAGCTGCAATTTGAAGTTGTGCAACGGC
GGCTTAAAGATGAGTACAATGTCGACAGCCGCTTAGATCCCATGCCGTAC
ACCGTAGCTAGATGGGTAGTGGGTCCTGGAGACCCTTGGGAGGTGGTTGA
TAGCTGCGGTAGGCTGTTTGGCGTTTTCTGCGCAAAAGATCAGTGGGGGC
GGCCTGTTCTTCTATTCAAGAATGATTGGGGTCTAAACAACCTGCTTGCC
GATCACGATGTAGAGCTGAAACCTTGGGCTTTTGCACCGGAGGAATAA
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