Gchil3625.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3625.t1
Unique Name	Gchil3625.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	414

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00025222_pilon	contig	tig00025222_pilon:284266..285507 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	248742.XP_005643556.1
PFAMs	Abhydrolase_1
Max annot lvl	3041\|Chlorophyta
Evalue	0.000148
EggNOG OGs	COG0596@1\|root,KOG4178@2759\|Eukaryota,37RE7@33090\|Viridiplantae,34KXK@3041\|Chlorophyta
Description	Alpha/beta hydrolase family
COG category	I

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3625	Gchil3625	Gracilaria chilensis NLEC103_M9 male	gene	tig00025222_pilon 284266..285507 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3625.t1.start1	Gchil3625.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00025222_pilon 284266..284268 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3625.t1.CDS1	Gchil3625.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00025222_pilon 284266..285507 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3625.t1.exon1	Gchil3625.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00025222_pilon 284266..285507 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3625.t1.stop1	Gchil3625.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00025222_pilon 285505..285507 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3625.t1	Gchil3625.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00025222_pilon 284266..285507 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00025222_pilon:284266..285507+
coding sequence from alignment at tig00025222_pilon:284266..285507+

mRNA sequence

>Gchil3625.t1 ID=Gchil3625.t1|Name=Gchil3625.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=414bp
MGHSDAPYAGINGGPGYNATELAHDCWDVVDAVRAMRARSDAHSDADTDD
ELELLNSEIAIVGHSMGGMIAQQMLVLRPAQVRFVALLSTHAGGLWNLIP
TGRMMHGAFKIAWSGFDRDVHAAVNLSLHFTQKFLDGWVGDWHHHAQHAD
TTPSSTQPNNSSSFDSDSDLSATSSHSLQTPPNSPTSSEPTEPPSLGSHR
TLLSTTEGIGFVESKLLELAHDAQIHFGLTRTALTRALWKPRRALFRAIA
KQQRRARRRFDIYHAKYAGREVNPEDHNPKEASSDALSSPQDSPHAMYGH
AAVVRSHYLDSSFARRLRACSRILKLVILGRHDKVVTPAASRRLASAVGA
DTVVEVDAAHFITDEAAAQVTMLIVYGIRQAFFSQTGRTCSCNWCRKDLN
EDIKEEAPSCRMC*

spliced messenger RNA

>Gchil3625.t1 ID=Gchil3625.t1|Name=Gchil3625.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1242bp|location=Sequence derived from alignment at tig00025222_pilon:284266..285507+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atggggcactcagacgctccttATGCTGGTATAAACGGCGGCCCTGGCTA
CAATGCCACGGAGCTTGCGCACGATTGTTGGGATGTCGTCGACGCTGTGC
GTGCCATGAGGGCTCGCAGTGATGCGCACTCTGACGCTGACACTGATGAT
GAACTCGAGCTTCTCAACTCGGAAATTGCTATTGTTGGTCACTCTATGGG
TGGTATGATTGCCCAGCAGATGCTTGTCCTGCGGCCCGCTCAAGTTCGGT
TTGTTGCGCTTTTGTCTACCCATGCGGGCGGTCTGTGGAATCTCATTCCT
ACCGGCAGAATGATGCACGGCGCTTTTAAGATCGCATGGAGCGGCTTTGA
CAGGGACGTTCACGCTGCTGTCAATTTATCTCTACACTTCACCCAAAAGT
TTTTAGACGGTTGGGTCGGCGATTGGCACCATCACGCACAACATGCTGAT
ACCACTCCCAGTAGCACACAGCCCAATAACAGTTCTAGCTTTGATTCTGA
TTCCGATCTCTCCGCAACAAGCTCCCATTCACTTCAAACCCCACCGAACT
CTCCAACCTCCTCAGAACCAACAGAGCCTCCATCTCTTGGCAGTCATCGC
ACATTGCTGTCTACCACTGAAGGCATTGGCTTTGTTGAATCAAAGCTTCT
TGAGCTTGCTCACGACGCCCAAATCCACTTCGGTCTCACTCGGACTGCAC
TCACGCGTGCGCTGTGGAAGCCACGGCGAGCGCTTTTTCGCGCAATAGCC
AAACAACAACGTCGCGCGCGTCGGAGATTCGATATATATCACGCAAAATA
CGCTGGCCGAGAAGTAAACCCGGAGGATCATAATCCCAAAGAAGCGAGCT
CCGATGCTCTGTCCAGCCCACAAGATTCCCCACATGCGATGTACGGGCAT
GCTGCCGTGGTCCGATCCCACTATCTCGACTCAAGCTTCGCCCGACGATT
AAGGGCATGTTCGAGGATTCTAAAGCTCGTCATCTTGGGAAGACATGATA
AAGTCGTCACCCCTGCCGCATCGAGAAGGCTCGCAAGCGCCGTGGGTGCC
GACACTGTGGTTGAAGTTGATGCGGCACATTTTATTACCGATGAAGCTGC
TGCACAGGTTACAATGCTTATAGTTTACGGAATTCGACAAGCATTCTTTT
CGCAAACCGGAAGGACATGCTCTTGCAATTGGTGCCGCAAAGATCTCAAT
GAAGATATCAAGGAAGAAGCGCCATCATGTCGAATGTGTTGA

protein sequence of Gchil3625.t1

>Gchil3625.t1 ID=Gchil3625.t1|Name=Gchil3625.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=414bp
MGHSDAPYAGINGGPGYNATELAHDCWDVVDAVRAMRARSDAHSDADTDD
ELELLNSEIAIVGHSMGGMIAQQMLVLRPAQVRFVALLSTHAGGLWNLIP
TGRMMHGAFKIAWSGFDRDVHAAVNLSLHFTQKFLDGWVGDWHHHAQHAD
TTPSSTQPNNSSSFDSDSDLSATSSHSLQTPPNSPTSSEPTEPPSLGSHR
TLLSTTEGIGFVESKLLELAHDAQIHFGLTRTALTRALWKPRRALFRAIA
KQQRRARRRFDIYHAKYAGREVNPEDHNPKEASSDALSSPQDSPHAMYGH
AAVVRSHYLDSSFARRLRACSRILKLVILGRHDKVVTPAASRRLASAVGA
DTVVEVDAAHFITDEAAAQVTMLIVYGIRQAFFSQTGRTCSCNWCRKDLN
EDIKEEAPSCRMC*

mRNA from alignment at tig00025222_pilon:284266..285507+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3625.t1 ID=Gchil3625.t1|Name=Gchil3625.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1242bp|location=Sequence derived from alignment at tig00025222_pilon:284266..285507+ (Gracilaria chilensis NLEC103_M9 male)
atggggcactcagacgctccttATGCTGGTATAAACGGCGGCCCTGGCTA
CAATGCCACGGAGCTTGCGCACGATTGTTGGGATGTCGTCGACGCTGTGC
GTGCCATGAGGGCTCGCAGTGATGCGCACTCTGACGCTGACACTGATGAT
GAACTCGAGCTTCTCAACTCGGAAATTGCTATTGTTGGTCACTCTATGGG
TGGTATGATTGCCCAGCAGATGCTTGTCCTGCGGCCCGCTCAAGTTCGGT
TTGTTGCGCTTTTGTCTACCCATGCGGGCGGTCTGTGGAATCTCATTCCT
ACCGGCAGAATGATGCACGGCGCTTTTAAGATCGCATGGAGCGGCTTTGA
CAGGGACGTTCACGCTGCTGTCAATTTATCTCTACACTTCACCCAAAAGT
TTTTAGACGGTTGGGTCGGCGATTGGCACCATCACGCACAACATGCTGAT
ACCACTCCCAGTAGCACACAGCCCAATAACAGTTCTAGCTTTGATTCTGA
TTCCGATCTCTCCGCAACAAGCTCCCATTCACTTCAAACCCCACCGAACT
CTCCAACCTCCTCAGAACCAACAGAGCCTCCATCTCTTGGCAGTCATCGC
ACATTGCTGTCTACCACTGAAGGCATTGGCTTTGTTGAATCAAAGCTTCT
TGAGCTTGCTCACGACGCCCAAATCCACTTCGGTCTCACTCGGACTGCAC
TCACGCGTGCGCTGTGGAAGCCACGGCGAGCGCTTTTTCGCGCAATAGCC
AAACAACAACGTCGCGCGCGTCGGAGATTCGATATATATCACGCAAAATA
CGCTGGCCGAGAAGTAAACCCGGAGGATCATAATCCCAAAGAAGCGAGCT
CCGATGCTCTGTCCAGCCCACAAGATTCCCCACATGCGATGTACGGGCAT
GCTGCCGTGGTCCGATCCCACTATCTCGACTCAAGCTTCGCCCGACGATT
AAGGGCATGTTCGAGGATTCTAAAGCTCGTCATCTTGGGAAGACATGATA
AAGTCGTCACCCCTGCCGCATCGAGAAGGCTCGCAAGCGCCGTGGGTGCC
GACACTGTGGTTGAAGTTGATGCGGCACATTTTATTACCGATGAAGCTGC
TGCACAGGTTACAATGCTTATAGTTTACGGAATTCGACAAGCATTCTTTT
CGCAAACCGGAAGGACATGCTCTTGCAATTGGTGCCGCAAAGATCTCAAT
GAAGATATCAAGGAAGAAGCGCCATCATGTCGAATGTGTTGA

Coding sequence (CDS) from alignment at tig00025222_pilon:284266..285507+

>Gchil3625.t1 ID=Gchil3625.t1|Name=Gchil3625.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1242bp|location=Sequence derived from alignment at tig00025222_pilon:284266..285507+ (Gracilaria chilensis NLEC103_M9 male)
atggggcactcagacgctccttATGCTGGTATAAACGGCGGCCCTGGCTA
CAATGCCACGGAGCTTGCGCACGATTGTTGGGATGTCGTCGACGCTGTGC
GTGCCATGAGGGCTCGCAGTGATGCGCACTCTGACGCTGACACTGATGAT
GAACTCGAGCTTCTCAACTCGGAAATTGCTATTGTTGGTCACTCTATGGG
TGGTATGATTGCCCAGCAGATGCTTGTCCTGCGGCCCGCTCAAGTTCGGT
TTGTTGCGCTTTTGTCTACCCATGCGGGCGGTCTGTGGAATCTCATTCCT
ACCGGCAGAATGATGCACGGCGCTTTTAAGATCGCATGGAGCGGCTTTGA
CAGGGACGTTCACGCTGCTGTCAATTTATCTCTACACTTCACCCAAAAGT
TTTTAGACGGTTGGGTCGGCGATTGGCACCATCACGCACAACATGCTGAT
ACCACTCCCAGTAGCACACAGCCCAATAACAGTTCTAGCTTTGATTCTGA
TTCCGATCTCTCCGCAACAAGCTCCCATTCACTTCAAACCCCACCGAACT
CTCCAACCTCCTCAGAACCAACAGAGCCTCCATCTCTTGGCAGTCATCGC
ACATTGCTGTCTACCACTGAAGGCATTGGCTTTGTTGAATCAAAGCTTCT
TGAGCTTGCTCACGACGCCCAAATCCACTTCGGTCTCACTCGGACTGCAC
TCACGCGTGCGCTGTGGAAGCCACGGCGAGCGCTTTTTCGCGCAATAGCC
AAACAACAACGTCGCGCGCGTCGGAGATTCGATATATATCACGCAAAATA
CGCTGGCCGAGAAGTAAACCCGGAGGATCATAATCCCAAAGAAGCGAGCT
CCGATGCTCTGTCCAGCCCACAAGATTCCCCACATGCGATGTACGGGCAT
GCTGCCGTGGTCCGATCCCACTATCTCGACTCAAGCTTCGCCCGACGATT
AAGGGCATGTTCGAGGATTCTAAAGCTCGTCATCTTGGGAAGACATGATA
AAGTCGTCACCCCTGCCGCATCGAGAAGGCTCGCAAGCGCCGTGGGTGCC
GACACTGTGGTTGAAGTTGATGCGGCACATTTTATTACCGATGAAGCTGC
TGCACAGGTTACAATGCTTATAGTTTACGGAATTCGACAAGCATTCTTTT
CGCAAACCGGAAGGACATGCTCTTGCAATTGGTGCCGCAAAGATCTCAAT
GAAGATATCAAGGAAGAAGCGCCATCATGTCGAATGTGTTGA